These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [TCGGCGAGGNCAACGTTCCCGCGGTTCGTGCCACTGACGGAGNACGATCCAGACCAGGCACCGCCGAAAGACNAANAGGCCTTTGGCGCGATCTCGTGGCCTATTGGATACTGGGACTGTGCAACAACTACGGCTATGTGGTGATGCTGACAGCTGCGCACGCATATTCTAAAAGTAGCTGGAGGGAGGAGACGGACACGCCAAGAGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACTGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACNGTCCGTGCAACAAGCTCTCGACTGGTGNCAATACCTCCTGGCCGACATCCCTGCCCGGGCACCTGGGCCGGTC] [+] EMBL BX619216 [TCGGCGAGGNCAACGTTCCCGCGGTTCGTGCCACTGACGGAGNACGATCCAGACCAGGCACCGCCGAAAGACNAANAGGCCTTTGGCGCGATCTCGTGGCCTATTGGATACTGGGACTGTGCAACAACTACGGCTATGTGGTGATGCTGACAGCTGCGCACGCATATTCTAAAAGTAGCTGGAGGGAGGAGACGGACACGCCAAGAGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACTGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACNGTCCGTGCAACAAGCTCTCGACTGGTGNCAATACCTCCTGGCCGACATCCCTGCCCGGGCACCTGGGCCGGTC] consensusID : consensus_1239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [AGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACGGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACGTCCGTGCAACAAGCTCTCGACCGGTGCAATTCTCCTGGCCGACATCCTGCCGGCACTGGCCGTCAAATCGATTGCATCGTTCCTTCCGCTGGCGAAACATGTTCGAATTTTCCTATGTGTTGCGGCAGCCGCCGCCGGCTTTCTGCTGACGGCCTTTGCCACCGTCGAATGGGTGCTGTTCGTCGGCGTTATAGCGACCTCGTTTTCATCCGGGCTCGGCGAGGCCACCTTCCTCGCGTACGCAACATACTTCAACAAG] [+] EMBL BX616567 [AGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACACAACGGCCCGGGCCGATGACGTTACGTTTGGGTACGAGGCACGTCCGTGCAACAAGCTCTCGACCGGTGCAATTCTCCTGGCCGACATCCTGCCGGCACTGGCCGTCAAATCGATTGCATCGTTCCTTCCGCTGGCGAAACATGTTCGAATTTTCCTATGTGTTGCGGCAGCCGCCGCCGGCTTTCTGCTGACGGCCTTTGCCACCGTCGAATGGGTGCTGTTCGTCGGCGTTATAGCGACCTCGTTTTCATCCGGGCTCGGCGAGGCCACCTTCCTCGCGTACGCAACATACTTCAACAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1239#0 ----------------------TCGGCGAGGNCAACGTTCCCGCGGTTCGTGCCACTGAC 38 consensus_1239#1 AGTGCATCGCCGTTGGACGGCTACGACGTGGCTAACA---CAACGGCCCGGGCCGATGAC 57 ** ** ** *** * *** ** *** **** consensus_1239#0 GGAGNACGATCCAG-ACCAGGCACCGCCGAAAGACNAANAGGCCTTTGGCGCGAT-CTCG 96 consensus_1239#1 G--TTACGTTTGGGTACGAGGCACGTCCGTGCAACAAGCTCTCGACCGGTGCAATTCTCC 115 * *** * * ** ****** *** ** * * ** ** ** *** consensus_1239#0 TGGCCTATTGGATACTGGGACTGTGCAACAACTACGGCTATGTGGTGATGCTGACAGCTG 156 consensus_1239#1 TGGCCGACATCCTGCCGGCACTGGCCGTCAAAT-CGATTGCATCGT---TCCTTCCGCTG 171 ***** * * * ** **** * *** * ** * * ** * * **** consensus_1239#0 CGCACGCATATTCTAAAAGTAGCTGGAGGGAGGAGACGGACACGCCAAGAGTGCATCGCC 216 consensus_1239#1 GCGAAACATGTTC--GAATTTTCCTATGTGTTGCGGCAGC--CGCCGCCGGCTTTCTGCT 227 * *** *** ** * * * * * * * * **** * ** consensus_1239#0 GTTGGACGGCTACGACGTGGCTAACACAACTGCCCGGGCCGATGACGTTACG-TTTGGGT 275 consensus_1239#1 GACGGCCTTTGCCACCGTCGA-ATGGGTGCTGTTC--GTCGGCGTTATAGCGACCTCGTT 284 * ** * * *** * * *** * * ** * * ** * * * consensus_1239#0 ACGAGGCACNGTCCGTGCAACAAGCTCTCGACTGGTGNCAATACCTCCTGGCCGACATCC 335 consensus_1239#1 TTCATCCGGGCTCGGCGAGGCCACCTTCCTCGCGTACGCAACATACTTCAACAAG----- 339 * * ** * * * * ** * * *** * * consensus_1239#0 CTGCCCGGGCACCTGGGCCGGTC 358 consensus_1239#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||