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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence
[GCACGCGCAGCAGGCTGAGTGAGAAAAAAAGGGTCGTGCGTGTTCGCAAGATTCGGCCACCAACATTAGCCCCTAGCACCATCAGGCAAAGCAAAAGGCTACGCAGTACAAAAGCATTGTTCTAGGGAGTAGCGGGGGGAAAAGGTCGTGGAGCGGACCGCGTAAGTGCATAATCGGGCGAGTACAGCCCTCCCACCCCATTTGTCGGTGCAAAACTCTGTCGTGGGATGCACCCCCCAGCACCCAGTGTGAAGCGTGCATGAGCGGGGTAGTGGCATGTGCAAACCTCTCCCCGTGTTCCCCCCTGTTCCAGTGCAGCGCAAACCCGTTCCGCCGCACTGCCGCACTTCGCTCGATGACTAATCCATCCAACCGTATCGTCCGGCGCAACAATACCGTGGTGCAGCTGGTGGTGGCGGCGTGAAACACTCCACCCAGGACGGGCATGCGATCGCAGCCCAGAGCAGCATTCAGACGACGCTACTACTACTATCGCCGCACGGTCCGTCACCGTCCGGTTCCGGTCTGGCGCAGACTATCGGGTTAAACGTCATGACACCTCAGCGACCACCGCGGCGAAGGGCCCAGTCCGTGGGCAACTCGAGCTACGGCTCGAGCCCGGCCCTGTCGTCCCACACGCCCCGAGGATCACTCTTTACCGCTAACGAGGAAGATGTATGCTACGTACGCATCCGGGTCCTGGGGGCGAGCGGACTGGCCA]
[+] EMBL BX605368 [GCACGCGCAGCAGGCTGAGTGAGAAAAAAAGGGTCGTGCGTGTTCGCAAGATTCGGCCACCAACATTAGCCCCTAGCACCATCAGGCAAAGCAAAAGGCTACGCAGTACAAAAGCATTGTTCTAGGGAGTAGCGGGGGGAAAAGGTCGTGGAGCGGACCGCGTAAGTGCATAATCGGGCGAGTACAGCCCTCCCACCCCATTTGTCGGTGCAAAACTCTGTCGTGGGATGCACCCCCCAGCACCCAGTGTGAAGCGTGCATGAGCGGGGTAGTGGCATGTGCAAACCTCTCCCCGTGTTCCCCCCTGTTCCAGTGCAGCGCAAACCCGTTCCGCCGCACTGCCGCACTTCGCTCGATGACTAATCCATCCAACCGTATCGTCCGGCGCAACAATACCGTGGTGCAGCTGGTGGTGGCGGCGTGAAACACTCCACCCAGGACGGGCATGCGATCGCAGCCCAGAGCAGCATTCAGACGACGCTACTACTACTATCGCCGCACGGTCCGTCACCGTCCGGTTCCGGTCTGGCGCAGACTATCGGGTTAAACGTCATGACACCTCAGCGACCACCGCGGCGAAGGGCCCAGTCCGTGGGCAACTCGAGCTACGGCTCGAGCCCGGCCCTGTCGTCCCACACGCCCCGAGGATCACTCTTTACCGCTAACGAGGAAGATGTATGCTACGTACGCATCCGGGTCCTGGGGGCGAGCGGACTGGCCA]
consensusID : consensus_1240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence
[CCGGTACATGGTTGCGAGCAGATGTTACCGCGGGTTTTGCTGCTGCTTGTTGCAAAACTGGCTGCCAGTTGTGTTTCATCCGGGTGGAAAAATTGCGTTTTCCGTTTGGTTTGCAGCGAAGCTGCACGCGCCCCCCTGTATAATTGTGTTCTTTGAGAAGGAGGCGAAGGAAAGTGACCCCGATGGGGTAAACATTTCAGTGACTCAAAATTAAGTGCGACCAAAAACGATAGAGAAGCGAAAGGAAGCGAATCGGAGTGACCTAAGGGGAGGGGGTGTTCTGAAGGGAGGTTCCCCGCGGCAACCAACAAATCGAACGAAATGACGCGAACCGGGATGTTGATCAACTTGAACGAGGAAGATGTATGCTACGTGCGCATCCGGGTCCTGGGGGCGAGCGGGCTGGCCAAGAAGGACATCTTTGGCTACAGCGATCCTTACGTGAAGATTGAGCAGAACACCATCACCGGCGACGTCAACGTGGACCACATGGTGACGAAAACGAAACGAAGGACGCTGAACCCGGTCTGGAACGAGGAGTTTGTGTTTCGCGTCAAACCGAACGAGCACAAGCTGGTGTTTCAGGTGTTCGACGAGAATCGGCTGACGCGCGACGGCTTCATGGGGCTAGTCGATCTG]
[+] EMBL BM612303 [CCGGTACATGGTTGCGAGCAGATGTTACCGCGGGTTTTGCTGCTGCTTGTTGCAAAACTGGCTGCCAGTTGTGTTTCATCCGGGTGGAAAAATTGCGTTTTCCGTTTGGTTTGCAGCGAAGCTGCACGCGCCCCCCTGTATAATTGTGTTCTTTGAGAAGGAGGCGAAGGAAAGTGACCCCGATGGGGTAAACATTTCAGTGACTCAAAATTAAGTGCGACCAAAAACGATAGAGAAGCGAAAGGAAGCGAATCGGAGTGACCTAAGGGGAGGGGGTGTTCTGAAGGGAGGTTCCCCGCGGCAACCAACAAATCGAACGAAATGACGCGAACCGGGATGTTGATCAACTTGAACGAGGAAGATGTATGCTACGTGCGCATCCGGGTCCTGGGGGCGAGCGGGCTGGCCAAGAAGGACATCTTTGGCTACAGCGATCCTTACGTGAAGATTGAGCAGAACACCATCACCGGCGACGTCAACGTGGACCACATGGTGACGAAAACGAAACGAAGGACGCTGAACCCGGTCTGGAACGAGGAGTTTGTGTTTCGCGTCAAACCGAACGAGCACAAGCTGGTGTTTCAGGTGTTCGACGAGAATCGGCTGACGCGCGACGGCTTCATGGGGCTAGTCGATCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1240#0 GCACGCGCAGCAGGCTGAGTGAGAAAAAAAGGGTCGTGCGTGTTCGCAAGATTCGGCCAC 60
consensus_1240#1 --------------------------------CCGGTACATGGTTGCGAGCAGATGTTAC 28
** * ** * ** ** * **
consensus_1240#0 CAACATTAGCCCCTAGCACCATCAGGCAAAGCAAAAGGCTACGCAGTACAAAAGCATTGT 120
consensus_1240#1 CG----CGGGTTTTGCTGCTGCTTGTTGCAA-AACTGGCTGC-CAGTTGTGTTTCATCCG 82
* * * * * * ** **** * **** ***
consensus_1240#0 TCTAGGGAG-TAGCGGGGGGAAAAGGTCGTGGAGCGGACCGCGTAAGTGCATAATCGGGC 179
consensus_1240#1 GGTGGAAAAATTGCGTTTTCCGTTTGGTTTGCAGCGAAGC-TGCACGCGCCCCCCTGTAT 141
* * * * *** * ** **** * * * * * ** *
consensus_1240#0 GAGTACAGCCCTCCCACCCCATTTGTCGGTGCAAAACTCTGTCGTGGGATGCACCCCCCA 239
consensus_1240#1 AATTGTGTTCTTTGAGAAGGAGGCGAAGGAAAGTGACCCCG--ATGGGGTAAACATTTCA 199
* * * * * * ** ** * * **** * ** **
consensus_1240#0 GC-ACCCAGTGTGAAGCGTG--CATGAGCGGGGTAGTGGCATGTGCAAACCTCTCCCCGT 296
consensus_1240#1 GTGACTCAAAATTAAGTGCGACCAAAAACGATAGAGAAGCGAAAGGAAGCGAATCGGAGT 259
* ** ** * *** * * ** * ** ** ** * ** * ** **
consensus_1240#0 GTTCCCCCCTGTTCCAGTGCAGCGCAAACCCGTTCCGCCGCACTGCCGCACTTCGCTCGA 356
consensus_1240#1 GACCTAAGGGGAGGGGGTGTTCTGAAGGGAGGTTCC-CCGCGGCAAC-CAACAAATCGAA 317
* * * *** * * ***** **** * ** *
consensus_1240#0 TGACTAATCCATCCAACCGTATCGTCCGGCGCAACAATACCGTGGTGCAGCTGGTGGTGG 416
consensus_1240#1 CGA--AATGACGCGAACCGGGATGTT--GATCAACTTGAACGAGGAA-----GATGTATG 368
** *** * ***** ** * **** * ** ** * ** *
consensus_1240#0 CGGCGTGAAACACTCCACCCAGGACGGGCATGCGATCGCAGCCCAGAGCAGCATTCAGAC 476
consensus_1240#1 CTACGTGCGCATCCGGGTCCTGG--GGGCGAGCGGGC-TGGCCAAGAAGGACATCTTTG- 424
* **** * ** ** **** *** * *** *** ***
consensus_1240#0 GACGCTACTACTACTATCGCCGCACGGTCCGTCACCGTCCGGTTCCGGTCTGGCGCAGAC 536
consensus_1240#1 ---GCTACAGCGATCCTTACGTGAAGATTGAGCAGAACACCATCACCGGC-GACGTCAAC 480
***** * * * * * * * ** * * * * * * ** **
consensus_1240#0 TATCGGGTTAAACGTCATGACACCTCAGCGACCACCGCGGCGAAGGGCCCAGTCCGTGGG 596
consensus_1240#1 -GTGGACCACATGGTGACGAAAACGAAACGA-----AGGACGCTGAACCCGGTCTG-GAA 533
* * * ** * ** * * * *** * ** * *** *** * *
consensus_1240#0 CAACTCGAGCTACGGCTCGAGCCCGGCCCTGTCGTCCCACACGCCCCGAGGATCACTCTT 656
consensus_1240#1 CGA--------GGAGTTTGTGTTTCGC---GTCAAACCGAACGAGCACAAGCTGGTGTTT 582
* * * * * * ** *** ** *** * * * * **
consensus_1240#0 TACCGCTAACGAGGAAGATGTATGCTACGTACGCATCCGGGTCCTGGGGGCGAGCGGACT 716
consensus_1240#1 CAG-GTGTTCGACGAGAAT---CGGCTGACGCGCGACGGCTTCATGGGGCTAGTCGATCT 638
* * *** ** ** * *** * * ** ***** ** **
consensus_1240#0 GGCCA 721
consensus_1240#1 G---- 639
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||