cluster # 1244

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Anopheles gambiae
cluster # 1244 cluster # 1244 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1244#0 length = 522 sequences # 1

consensus_1244#1 length = 379 sequences # 1

consensusID : consensus_1244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [GCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAAAAATCTCGCATTTTATCGCTCGGATTGCTAACTTTAGTAACAAATTAAATATCTTTCCCTTCGTCTAACGTGGATATGGTCTGTCCTTCCTTGGGATTTACACACACACACTCACACACAGACAAACATACATTCCCAAAAGAAGGGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAAAAGTAAAAAAAAAACAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCGCCACACCTGTCAAATGGGGCCGGCTTTTGACGTTTGGGCACAGCAAGCCGAGCAACCGCTCTCTCTCTCTCTCACTCTCTCCGTACCACTGATACTGATAAGAGACAGAATTGCAGCAGGCCTAGGGACCGGTCCCCGTACCAAATATGGGCGTTTGGTGAAAGAGAATGATGCTTTCCTTTCCCTTTTTTTTACAGACCCACTTTCGCCGTGCCGAGA]

[+] EMBL CNS0928W             [GCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAAAAATCTCGCATTTTATCGCTCGGATTGCTAACTTTAGTAACAAATTAAATATCTTTCCCTTCGTCTAACGTGGATATGGTCTGTCCTTCCTTGGGATTTACACACACACACTCACACACAGACAAACATACATTCCCAAAAGAAGGGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAAAAGTAAAAAAAAAACAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCGCCACACCTGTCAAATGGGGCCGGCTTTTGACGTTTGGGCACAGCAAGCCGAGCAACCGCTCTCTCTCTCTCTCACTCTCTCCGTACCACTGATACTGATAAGAGACAGAATTGCAGCAGGCCTAGGGACCGGTCCCCGTACCAAATATGGGCGTTTGGTGAAAGAGAATGATGCTTTCCTTTCCCTTTTTTTTACAGACCCACTTTCGCCGTGCCGAGA]




>consensus_1244#0
GCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAAAAATCTCGCATTTTATCGCTCG
GATTGCTAACTTTAGTAACAAATTAAATATCTTTCCCTTCGTCTAACGTGGATATGGTCT
GTCCTTCCTTGGGATTTACACACACACACTCACACACAGACAAACATACATTCCCAAAAG
AAGGGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAAAAGTAAAAAAAAAA
CAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCC
CCGCCACACCTGTCAAATGGGGCCGGCTTTTGACGTTTGGGCACAGCAAGCCGAGCAACC
GCTCTCTCTCTCTCTCACTCTCTCCGTACCACTGATACTGATAAGAGACAGAATTGCAGC
AGGCCTAGGGACCGGTCCCCGTACCAAATATGGGCGTTTGGTGAAAGAGAATGATGCTTT
CCTTTCCCTTTTTTTTACAGACCCACTTTCGCCGTGCCGAGA

consensusID : consensus_1244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [AACATGTTTCCATCGTTCTGGGGCGTTGTTCCCGTCGAGTTGTGGTAGCCTTTCCGCTTTGAGCTTTGCCTTTAATAGATTGAATCCCCCTGGGGGGAGGTTGGTTGTTTCAAGGGGTTTGTGGCGTGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAGCAAAAAAACAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCGCCACACCTGTCAAATGGGGTTCCTTGTTTTTTTTTTTTTCACCACAACCACTTCCACACGCCCAGCAGCAGTGGTTTGAAATAGCGATTATATCGCTTCAACCACCACTACACAGCAGCAGATGCGACATGCGGGGGAG]

[+] EMBL AGA284121            [AACATGTTTCCATCGTTCTGGGGCGTTGTTCCCGTCGAGTTGTGGTAGCCTTTCCGCTTTGAGCTTTGCCTTTAATAGATTGAATCCCCCTGGGGGGAGGTTGGTTGTTTCAAGGGGTTTGTGGCGTGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAGCAAAAAAACAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCGCCACACCTGTCAAATGGGGTTCCTTGTTTTTTTTTTTTTCACCACAACCACTTCCACACGCCCAGCAGCAGTGGTTTGAAATAGCGATTATATCGCTTCAACCACCACTACACAGCAGCAGATGCGACATGCGGGGGAG]




>consensus_1244#1
AACATGTTTCCATCGTTCTGGGGCGTTGTTCCCGTCGAGTTGTGGTAGCCTTTCCGCTTT
GAGCTTTGCCTTTAATAGATTGAATCCCCCTGGGGGGAGGTTGGTTGTTTCAAGGGGTTT
GTGGCGTGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAGCAAAAAAACAA
CTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCCCCG
CCACACCTGTCAAATGGGGTTCCTTGTTTTTTTTTTTTTCACCACAACCACTTCCACACG
CCCAGCAGCAGTGGTTTGAAATAGCGATTATATCGCTTCAACCACCACTACACAGCAGCA
GATGCGACATGCGGGGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1244#0      GCCTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATGAAAAATCTCGCATTTTATCGCTCG 60
consensus_1244#1      ----------------------------------------AACATGT-TTCCATCGTTCT 19
                                                              * *  *  **  **** ** 

consensus_1244#0      GATTGCTAACTTTAGTAACAAATTAAATATCTTTCCCTTCGTCTAACGTGGATATGGTCT 120
consensus_1244#1      GGGGCGTTGTTCCCGT--CGAGTTG--TGGTAGCCTTTCCGCTT----TGAGCTTTGCCT 71
                      *     *   *   **  * * **   *      *  * **  *    **    * * **

consensus_1244#0      GTCCTTCCTTGGGATTTACACACACACACTCACACACAGACAAACATACATTCCCAAAAG 180
consensus_1244#1      TTAATAGATTGAATCCCCCTGGGGGGAGGTTGGTTGTTTCAAGGGGTTTGT--------G 123
                       *  *   ***       *          *           *    *   *        *

consensus_1244#0      AAGGGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAAAAGTAAAAAAAAAA 240
consensus_1244#1      GCGTGGGGAATGTGTCGAAACGGTATTTCACTCTTCACTGCAGCAGCA------AAAAAA 177
                        * *****************************************  *      ******

consensus_1244#0      CAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCC 300
consensus_1244#1      CAACTTTTCCTCACGATTTAAGAATAAATGCACACAGACACAACGCGCTGCGTAGTCGCC 237
                      ************************************************************

consensus_1244#0      CCGCCACACCTGTCAAATGGGGCCGGCTTTTGACGTTTGGGCACAGCAAGCCGAGCAACC 360
consensus_1244#1      CCGCCACACCTGTCAAATGGGGTTC-CTTGTTTTTTTTTTTTTCACCA-------CAACC 289
                      **********************    *** *    ***     ** **       *****

consensus_1244#0      GCTCTCTCTCTCTCTCACTCTCTCCGTACCACTGATACTGATAAGAGACAGAATTGCAGC 420
consensus_1244#1      ACTT----------CCACACGCCCAGCAGCAGTGGTTTGAAATAGCGATTATATCGCTTC 339
                       **            *** * * * * * ** ** *    *  ** **    ** **  *

consensus_1244#0      AGGCCTAGGGACCGGTCCCC-GTACCAAATATGGGCGTTTGGTGAAAGAGAATGATGCTT 479
consensus_1244#1      AACC------ACCACTACACAGCAGCAGATGCGA-CATGCGGGGGAG------------- 379
                      *  *      ***  * * * * * ** **  *  * *  ** * *              

consensus_1244#0      TCCTTTCCCTTTTTTTTACAGACCCACTTTCGCCGTGCCGAGA 522
consensus_1244#1      -------------------------------------------