cluster # 1269

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Anopheles gambiae
cluster # 1269 cluster # 1269 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1269#0 length = 664 sequences # 1

consensus_1269#1 length = 379 sequences # 1

consensusID : consensus_1269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [CCGGCAACGCAGCAGCATTTTTCGTCGTCCGCATTTTTGCCTTTTTACCGTGCAGAAGCAACCGTTTTTCGAGTGAATTTTTGGCCAAACTGATGGGTAACGGTGCGTGACAGCGGATGGGTGCAATCGATGTGGGTGTGCGTGCTGAACCGCGATCGTCCCTATTCCCGTGCCTGGCAGACGTAATGAAGAAAAGGTTGTGTACACCCGAATGAAGACACTACGAAGCTCAGCGTCCCAGCAACATTTCTTCGAAAGCAATCGAAGCGGTCCTTTCACTTGGGGACCAGTTGGAAGAAACATCCGCCGGAACAAATCGCACCAGAAGGCAATACCTTCGTAACAAATCCATACGACGGATTGTAAATTTAACGCCCTCTACGATAAAAAAAAAGTGTCGTACGCTTGTGGTCGTGTGGTGGTGAATGGGACTGGCGGCAGTTGCATCGGTGCCCGTGAAGAAAAGATCCGATGCAGTGGAAGAAATGGCACCCGCTCTTACCGAGCCTCTAAGCCAAAGCAAACTGTCCTCCTCGGCCGCGTCGGGTGCCTCTCCGCGAACGAGCAGCAGCACAACGACACCGGCCGCCACGACAACGTACGACGGTACGACCATCATCACCGCACCGGACAATGCCCACGCCGAGTATCACCAAACACAAGC]

[+] EMBL BM617533             [CCGGCAACGCAGCAGCATTTTTCGTCGTCCGCATTTTTGCCTTTTTACCGTGCAGAAGCAACCGTTTTTCGAGTGAATTTTTGGCCAAACTGATGGGTAACGGTGCGTGACAGCGGATGGGTGCAATCGATGTGGGTGTGCGTGCTGAACCGCGATCGTCCCTATTCCCGTGCCTGGCAGACGTAATGAAGAAAAGGTTGTGTACACCCGAATGAAGACACTACGAAGCTCAGCGTCCCAGCAACATTTCTTCGAAAGCAATCGAAGCGGTCCTTTCACTTGGGGACCAGTTGGAAGAAACATCCGCCGGAACAAATCGCACCAGAAGGCAATACCTTCGTAACAAATCCATACGACGGATTGTAAATTTAACGCCCTCTACGATAAAAAAAAAGTGTCGTACGCTTGTGGTCGTGTGGTGGTGAATGGGACTGGCGGCAGTTGCATCGGTGCCCGTGAAGAAAAGATCCGATGCAGTGGAAGAAATGGCACCCGCTCTTACCGAGCCTCTAAGCCAAAGCAAACTGTCCTCCTCGGCCGCGTCGGGTGCCTCTCCGCGAACGAGCAGCAGCACAACGACACCGGCCGCCACGACAACGTACGACGGTACGACCATCATCACCGCACCGGACAATGCCCACGCCGAGTATCACCAAACACAAGC]




>consensus_1269#0
CCGGCAACGCAGCAGCATTTTTCGTCGTCCGCATTTTTGCCTTTTTACCGTGCAGAAGCA
ACCGTTTTTCGAGTGAATTTTTGGCCAAACTGATGGGTAACGGTGCGTGACAGCGGATGG
GTGCAATCGATGTGGGTGTGCGTGCTGAACCGCGATCGTCCCTATTCCCGTGCCTGGCAG
ACGTAATGAAGAAAAGGTTGTGTACACCCGAATGAAGACACTACGAAGCTCAGCGTCCCA
GCAACATTTCTTCGAAAGCAATCGAAGCGGTCCTTTCACTTGGGGACCAGTTGGAAGAAA
CATCCGCCGGAACAAATCGCACCAGAAGGCAATACCTTCGTAACAAATCCATACGACGGA
TTGTAAATTTAACGCCCTCTACGATAAAAAAAAAGTGTCGTACGCTTGTGGTCGTGTGGT
GGTGAATGGGACTGGCGGCAGTTGCATCGGTGCCCGTGAAGAAAAGATCCGATGCAGTGG
AAGAAATGGCACCCGCTCTTACCGAGCCTCTAAGCCAAAGCAAACTGTCCTCCTCGGCCG
CGTCGGGTGCCTCTCCGCGAACGAGCAGCAGCACAACGACACCGGCCGCCACGACAACGT
ACGACGGTACGACCATCATCACCGCACCGGACAATGCCCACGCCGAGTATCACCAAACAC
AAGC

consensusID : consensus_1269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [AATGGTCGGAAGTTCGGTGTTCGAATTTCCGTAGGATGCTGACTGGGTGCTCGCGGGTGTGAGGCAACGCGCGGAGCGAGCGAGAAACGTGCGAGGCGCAAAGAGTATGGCCAACCATCTCTCTTTCCCTCATTTCAGAACGACCCCGAGACGGCAACGCAGCAGCATTTTTCGTCGTCCGCGTTTTTGCCTTTTTACCGTGCAGAAGCAACCGTTTTTCGAGTGAATTTTTGGCCAAACTGATGGGTAACGGTGCGTGACAGCGGATGGGTGCAATCGATGTGGGTGTGCGTGCTGAACCGCGATCGTCCCTATTCCCGTGCCTGGCAGACGTAATGAAGAAAAGGTGAAGCCATCTTTTTTCCGTGTTCATCGTTTC]

[-] EMBL AGA284268            [AATGGTCGGAAGTTCGGTGTTCGAATTTCCGTAGGATGCTGACTGGGTGCTCGCGGGTGTGAGGCAACGCGCGGAGCGAGCGAGAAACGTGCGAGGCGCAAAGAGTATGGCCAACCATCTCTCTTTCCCTCATTTCAGAACGACCCCGAGACGGCAACGCAGCAGCATTTTTCGTCGTCCGCGTTTTTGCCTTTTTACCGTGCAGAAGCAACCGTTTTTCGAGTGAATTTTTGGCCAAACTGATGGGTAACGGTGCGTGACAGCGGATGGGTGCAATCGATGTGGGTGTGCGTGCTGAACCGCGATCGTCCCTATTCCCGTGCCTGGCAGACGTAATGAAGAAAAGGTGAAGCCATCTTTTTTCCGTGTTCATCGTTTC]




>consensus_1269#1
AATGGTCGGAAGTTCGGTGTTCGAATTTCCGTAGGATGCTGACTGGGTGCTCGCGGGTGT
GAGGCAACGCGCGGAGCGAGCGAGAAACGTGCGAGGCGCAAAGAGTATGGCCAACCATCT
CTCTTTCCCTCATTTCAGAACGACCCCGAGACGGCAACGCAGCAGCATTTTTCGTCGTCC
GCGTTTTTGCCTTTTTACCGTGCAGAAGCAACCGTTTTTCGAGTGAATTTTTGGCCAAAC
TGATGGGTAACGGTGCGTGACAGCGGATGGGTGCAATCGATGTGGGTGTGCGTGCTGAAC
CGCGATCGTCCCTATTCCCGTGCCTGGCAGACGTAATGAAGAAAAGGTGAAGCCATCTTT
TTTCCGTGTTCATCGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1269#0      ------------------------------------------------------------
consensus_1269#1      AATGGTCGGAAGTTCGGTGTTCGAATTTCCGTAGGATGCTGACTGGGTGCTCGCGGGTGT 60
                                                                                  

consensus_1269#0      ------------------------------------------------------------
consensus_1269#1      GAGGCAACGCGCGGAGCGAGCGAGAAACGTGCGAGGCGCAAAGAGTATGGCCAACCATCT 120
                                                                                  

consensus_1269#0      ------------------------------CCGGCAACGCAGCAGCATTTTTCGTCGTCC 30
consensus_1269#1      CTCTTTCCCTCATTTCAGAACGACCCCGAGACGGCAACGCAGCAGCATTTTTCGTCGTCC 180
                                                     *****************************

consensus_1269#0      GCATTTTTGCCTTTTTACCGTGCAGAAGCAACCGTTTTTCGAGTGAATTTTTGGCCAAAC 90
consensus_1269#1      GCGTTTTTGCCTTTTTACCGTGCAGAAGCAACCGTTTTTCGAGTGAATTTTTGGCCAAAC 240
                      ** *********************************************************

consensus_1269#0      TGATGGGTAACGGTGCGTGACAGCGGATGGGTGCAATCGATGTGGGTGTGCGTGCTGAAC 150
consensus_1269#1      TGATGGGTAACGGTGCGTGACAGCGGATGGGTGCAATCGATGTGGGTGTGCGTGCTGAAC 300
                      ************************************************************

consensus_1269#0      CGCGATCGTCCCTATTCCCGTGCCTGGCAGACGTAATGAAGAAAAGGTTGTGTACACCCG 210
consensus_1269#1      CGCGATCGTCCCTATTCCCGTGCCTGGCAGACGTAATGAAGAAAAGGTGAAGC-CATCT- 358
                      ************************************************   *  ** *  

consensus_1269#0      AATGAAGACACTACGAAGCTCAGCGTCCCAGCAACATTTCTTCGAAAGCAATCGAAGCGG 270
consensus_1269#1      --------TTTTTCCGTGTTCATCGTTTC------------------------------- 379
                                 * *   * *** ***  *                               

consensus_1269#0      TCCTTTCACTTGGGGACCAGTTGGAAGAAACATCCGCCGGAACAAATCGCACCAGAAGGC 330
consensus_1269#1      ------------------------------------------------------------
                                                                                  

consensus_1269#0      AATACCTTCGTAACAAATCCATACGACGGATTGTAAATTTAACGCCCTCTACGATAAAAA 390
consensus_1269#1      ------------------------------------------------------------
                                                                                  

consensus_1269#0      AAAAGTGTCGTACGCTTGTGGTCGTGTGGTGGTGAATGGGACTGGCGGCAGTTGCATCGG 450
consensus_1269#1      ------------------------------------------------------------
                                                                                  

consensus_1269#0      TGCCCGTGAAGAAAAGATCCGATGCAGTGGAAGAAATGGCACCCGCTCTTACCGAGCCTC 510
consensus_1269#1      ------------------------------------------------------------
                                                                                  

consensus_1269#0      TAAGCCAAAGCAAACTGTCCTCCTCGGCCGCGTCGGGTGCCTCTCCGCGAACGAGCAGCA 570
consensus_1269#1      ------------------------------------------------------------
                                                                                  

consensus_1269#0      GCACAACGACACCGGCCGCCACGACAACGTACGACGGTACGACCATCATCACCGCACCGG 630
consensus_1269#1      ------------------------------------------------------------
                                                                                  

consensus_1269#0      ACAATGCCCACGCCGAGTATCACCAAACACAAGC 664
consensus_1269#1      ----------------------------------