These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [GCAGATCGGCACAGGCGGTAGACATGGTTTCAGAACGATGGAACCGAAGTGTTGTTAGAAAGTTGTTTCCTTCATTCTACCTCATGTTTCACAATAATAAGATTTTCAGTGCATGTGGCCACGGTTATCTGTTGATTCGGGATCCGCATCCGCTTTTTACCAAAACCATTTGGTAAAGCAGTAATGGCAACATATAGGATAGGACTTGCAAAAGGAAACTGTGTGTGTGTGTGTTTCTCACTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTGACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCTGTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAGGATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCTTTCAGTAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTGTGAGCGCCTTTTGATAGCTTATCAAGCAGAACTGACTGGTTATTTNATGTGCGAGTAAACATGTAACTATCTTTGCTCTTNCGGTNTGGTATCACCACTGGCACCAAACCATGCACCCCCGANTCTTCTCACAAGCCCCACTCACTGGCCG] [+] EMBL BX466405 [GCAGATCGGCACAGGCGGTAGACATGGTTTCAGAACGATGGAACCGAAGTGTTGTTAGAAAGTTGTTTCCTTCATTCTACCTCATGTTTCACAATAATAAGATTTTCAGTGCATGTGGCCACGGTTATCTGTTGATTCGGGATCCGCATCCGCTTTTTACCAAAACCATTTGGTAAAGCAGTAATGGCAACATATAGGATAGGACTTGCAAAAGGAAACTGTGTGTGTGTGTGTTTCTCACTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTGACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCTGTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAGGATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCTTTCAGTAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTGTGAGCGCCTTTTGATAGCTTATCAAGCAGAACTGACTGGTTATTTNATGTGCGAGTAAACATGTAACTATCTTTGCTCTTNCGGTNTGGTATCACCACTGGCACCAAACCATGCACCCCCGANTCTTCTCACAAGCCCCACTCACTGGCCG] consensusID : consensus_1276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [AGATCGCCCGAGTCAAAGGAAACTGTGTGTGTGTGTGTTCTCACTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTGACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCTGTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAGGATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCTTTCATAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTTGAGCGCCTTTCGATAGCTTATCAAGCAGAACTGACTGGTTATTTTATGTGCGATAAACATGTAACTATCTTTGTGTCGGTATCACCACTGCCACCAAACCA] [+] EMBL AL931682 [AGATCGCCCGAGTCAAAGGAAACTGTGTGTGTGTGTGTTCTCACTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTGACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCTGTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAGGATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCTTTCATAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTTGAGCGCCTTTCGATAGCTTATCAAGCAGAACTGACTGGTTATTTTATGTGCGATAAACATGTAACTATCTTTGTGTCGGTATCACCACTGCCACCAAACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1276#0 GCAGATCGGCACAGGCGGTAGACATGGTTTCAGAACGATGGAACCGAAGTGTTGTTAGAA 60 consensus_1276#1 ------------------------------------------------------------ consensus_1276#0 AGTTGTTTCCTTCATTCTACCTCATGTTTCACAATAATAAGATTTTCAGTGCATGTGGCC 120 consensus_1276#1 ------------------------------------------------------------ consensus_1276#0 ACGGTTATCTGTTGATTCGGGATCCGCATCCGCTTTTTACCAAAACCATTTGGTAAAGCA 180 consensus_1276#1 ------------------------------------------------------------ consensus_1276#0 GTAATGGCAACATATAGGATAGGACTTGCAAAAGGAAACTGTGTGTGTGTGTGTTTCTCA 240 consensus_1276#1 ----------------AGATCGCCCGAGTCAAAGGAAACTGTGTGTGTGTGTGTT-CTCA 43 *** * * * ************************* **** consensus_1276#0 CTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTG 300 consensus_1276#1 CTCACCAAGCAGCAGTAGCAGCAGCATACCAATCTGAAAGGGCAAACACCACTTAGGCTG 103 ************************************************************ consensus_1276#0 ACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCT 360 consensus_1276#1 ACAAAAGAAAATTAAAAATAATAATATCTGTGATTGTTTCAGTGAACATCCGGTCGTTCT 163 ************************************************************ consensus_1276#0 GTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAG 420 consensus_1276#1 GTGAGAATGTAAAGTCGGCGGGCTGCTCTGAAATGAAAAAGATTCTAGGTTTACGCGCAG 223 ************************************************************ consensus_1276#0 GATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCT 480 consensus_1276#1 GATAGAGCAGGTTACCGCAATCCTCTCTACCCCTCCACACACACGCTATGCAGCAGTTCT 283 ************************************************************ consensus_1276#0 TTCAGTAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTTGTGAGCGCCTTTTGATA 540 consensus_1276#1 TTCA-TAACTTATCTCTCTTTTACGTGATCAACCATGCTTGTT-TGAGCGCCTTTCGATA 341 **** ************************************** *********** **** consensus_1276#0 GCTTATCAAGCAGAACTGACTGGTTATTTNATGTGCGAGTAAACATGTAACTATCTTTGC 600 consensus_1276#1 GCTTATCAAGCAGAACTGACTGGTTATTTTATGTGCGA-TAAACATGTAACTATCTTTGT 400 ***************************** ******** ******************** consensus_1276#0 TCTTNCGGTNTGGTATCACCACTGGCACCAAACCATGCACCCCCGANTCTTCTCACAAGC 660 consensus_1276#1 G--------TCGGTATCACCACTGCCACCAAACCA------------------------- 427 ************* ********** consensus_1276#0 CCCACTCACTGGCCG 675 consensus_1276#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||