cluster # 1297

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Anopheles gambiae
cluster # 1297 cluster # 1297 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1297#0 length = 664 sequences # 1

consensus_1297#1 length = 342 sequences # 1

consensusID : consensus_1297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence

                              [CCGCTTTACCGGTCGGAATCATGCGTGTGCTTACCGATGCAACTTGCATTAGAGTGCTTTGTGGCGAGAAATTACTCATAGGCATAGGGAACCAGTTGCTGCTCGTGTACCGCTCATCAAATGGATCGACGCTACGAAGGATCGCTCCATTGCCAAGGCTAGTGGATAAAATTCATGGAATAGAGGCGTGTGTTATGAAGGAAGAACAATGGCTCGTGATAGTTCACGCTGGTCGTGCAACGTACAGTATCATATTAGATTGCCAATCCCACACGTTCTCTGAATGTGCTCTGCTCGTTATTCCGGAAGAAATAGACCTCCAGCCGGTACCTTTCATTCGACGACGGTTAAACGACTGGATTAGCCGGATCTCACTGCTCTCTTCTACCGAGCTGTGCATTGTTACCGCGCATGGAGTGGCAGCGTTATTGAAACGAGGCGATAACAATCGTTGTTTGCAATGGGATGTTGTAGATAAAAGTCCGTGCGAGGACGGGTCTACGCTCTACTGTTCCACGATTAGCGGCCAACAGTGGGAGAACGTTATAATACTTTCTGGCACTGCCTTAGGTCTTTTGCTGATCTGGTCCGTTGATGGTCCAAACCGGGGCAAAGTGTTAACGAGTGTCTCTGCCCATAACGGGGTCATTTTCTCGATATCGTG]

[+] EMBL BM647619             [CCGCTTTACCGGTCGGAATCATGCGTGTGCTTACCGATGCAACTTGCATTAGAGTGCTTTGTGGCGAGAAATTACTCATAGGCATAGGGAACCAGTTGCTGCTCGTGTACCGCTCATCAAATGGATCGACGCTACGAAGGATCGCTCCATTGCCAAGGCTAGTGGATAAAATTCATGGAATAGAGGCGTGTGTTATGAAGGAAGAACAATGGCTCGTGATAGTTCACGCTGGTCGTGCAACGTACAGTATCATATTAGATTGCCAATCCCACACGTTCTCTGAATGTGCTCTGCTCGTTATTCCGGAAGAAATAGACCTCCAGCCGGTACCTTTCATTCGACGACGGTTAAACGACTGGATTAGCCGGATCTCACTGCTCTCTTCTACCGAGCTGTGCATTGTTACCGCGCATGGAGTGGCAGCGTTATTGAAACGAGGCGATAACAATCGTTGTTTGCAATGGGATGTTGTAGATAAAAGTCCGTGCGAGGACGGGTCTACGCTCTACTGTTCCACGATTAGCGGCCAACAGTGGGAGAACGTTATAATACTTTCTGGCACTGCCTTAGGTCTTTTGCTGATCTGGTCCGTTGATGGTCCAAACCGGGGCAAAGTGTTAACGAGTGTCTCTGCCCATAACGGGGTCATTTTCTCGATATCGTG]




>consensus_1297#0
CCGCTTTACCGGTCGGAATCATGCGTGTGCTTACCGATGCAACTTGCATTAGAGTGCTTT
GTGGCGAGAAATTACTCATAGGCATAGGGAACCAGTTGCTGCTCGTGTACCGCTCATCAA
ATGGATCGACGCTACGAAGGATCGCTCCATTGCCAAGGCTAGTGGATAAAATTCATGGAA
TAGAGGCGTGTGTTATGAAGGAAGAACAATGGCTCGTGATAGTTCACGCTGGTCGTGCAA
CGTACAGTATCATATTAGATTGCCAATCCCACACGTTCTCTGAATGTGCTCTGCTCGTTA
TTCCGGAAGAAATAGACCTCCAGCCGGTACCTTTCATTCGACGACGGTTAAACGACTGGA
TTAGCCGGATCTCACTGCTCTCTTCTACCGAGCTGTGCATTGTTACCGCGCATGGAGTGG
CAGCGTTATTGAAACGAGGCGATAACAATCGTTGTTTGCAATGGGATGTTGTAGATAAAA
GTCCGTGCGAGGACGGGTCTACGCTCTACTGTTCCACGATTAGCGGCCAACAGTGGGAGA
ACGTTATAATACTTTCTGGCACTGCCTTAGGTCTTTTGCTGATCTGGTCCGTTGATGGTC
CAAACCGGGGCAAAGTGTTAACGAGTGTCTCTGCCCATAACGGGGTCATTTTCTCGATAT
CGTG

consensusID : consensus_1297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [AACGAATCGGCACGAGGTGTTAACTTTCTTGGCACTGCCTTAGGCTCTTTTGCTGATCTGGTCCGTTGATGGTCCAAACCGGGGCAAAGTGTTAACGAGTGTCTCTGCCCATAACGGGGTCATTTTCTCGATATCGTGCAATTTTGATATAGGCTTGCTCACAACTACCTCGGATGATCGATCGGTTAAATTTTGGAACGTTAAACTGTCAGGAAATAAGCATAGCTGCTCGCGGGCGATAGAACTGCGGGAGGAAAGATATTGTTTCGCCCACACAGCTAGGGTGTTTCAATGTCGTATCTTAAATGGAGAACACCGAACTCTGGTTGCATCGATCGGGGA]

[+] EMBL BX469370             [AACGAATCGGCACGAGGTGTTAACTTTCTTGGCACTGCCTTAGGCTCTTTTGCTGATCTGGTCCGTTGATGGTCCAAACCGGGGCAAAGTGTTAACGAGTGTCTCTGCCCATAACGGGGTCATTTTCTCGATATCGTGCAATTTTGATATAGGCTTGCTCACAACTACCTCGGATGATCGATCGGTTAAATTTTGGAACGTTAAACTGTCAGGAAATAAGCATAGCTGCTCGCGGGCGATAGAACTGCGGGAGGAAAGATATTGTTTCGCCCACACAGCTAGGGTGTTTCAATGTCGTATCTTAAATGGAGAACACCGAACTCTGGTTGCATCGATCGGGGA]




>consensus_1297#1
AACGAATCGGCACGAGGTGTTAACTTTCTTGGCACTGCCTTAGGCTCTTTTGCTGATCTG
GTCCGTTGATGGTCCAAACCGGGGCAAAGTGTTAACGAGTGTCTCTGCCCATAACGGGGT
CATTTTCTCGATATCGTGCAATTTTGATATAGGCTTGCTCACAACTACCTCGGATGATCG
ATCGGTTAAATTTTGGAACGTTAAACTGTCAGGAAATAAGCATAGCTGCTCGCGGGCGAT
AGAACTGCGGGAGGAAAGATATTGTTTCGCCCACACAGCTAGGGTGTTTCAATGTCGTAT
CTTAAATGGAGAACACCGAACTCTGGTTGCATCGATCGGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1297#0      CCGCTTTACCGGTCGGAATCATGCGTGTGCTTACCGATGCAACTTGCATTAGAGTGCTTT 60
consensus_1297#1      ------------------------------------------------------------
                                                                                  

consensus_1297#0      GTGGCGAGAAATTACTCATAGGCATAGGGAACCAGTTGCTGCTCGTGTACCGCTCATCAA 120
consensus_1297#1      ------------------------------------AACGAATCG-GCACGAGGTGTTAA 23
                                                            *   *** * **      * **

consensus_1297#0      ATGGATCGACGCTACGAAGGATCGCTCCATTGCCAAGGCTAGTGGATAAAATTCATGGAA 180
consensus_1297#1      CTTTCTTGGCACTGCCTTAGGCTCTTTTGCTGATCTGGTCCGTTGATG--GTCCA--AAC 79
                       *   * * * ** *    *     *    **    **   ** ***    * **   * 

consensus_1297#0      TAGAGGCGTGTGTTATGAAGGAAGAACAATGGCTCGTGATAGTTCACGCTGGTCGTGCAA 240
consensus_1297#1      CGGGGCAAAGTGTTA----ACGAGTGTCTCTGCCCATAACGGGGTCATTTTCTCG-ATAT 134
                        * *    ******       **       ** * * *  *       *  ***   * 

consensus_1297#0      CGTACAGTATC-ATATTAGATTGCCAATCCCACACGTTCTCTGAATGTGCTCTGCTCGTT 299
consensus_1297#1      CGTGCAATTTTGATATAGGCTTGCT-----CACAACTACCTCGGATGATCGATCGGTTAA 189
                      *** ** * *  ****  * ****      ****  * *   * ***  *  *       

consensus_1297#0      ATTCCGGAAGAAATAGACCTCCAGCCGGTACCTTT---CATTCGACGACGGTTAAACGAC 356
consensus_1297#1      ATTTTGGAACGT-TAAACTGTCAGGAAATAAGCATAGCTGCTCGCGGGCGATAGAACTGC 248
                      ***  ****    ** **   ***    **    *      ***  * ** *  ***  *

consensus_1297#0      TGGATTAGCCGGATCTCACTGCTCTCTTCTACCGAGCTGTGCATTGTTACCGCGCATGGA 416
consensus_1297#1      GGGA--GGAAAGATATTGTTTCGCCCACACAGCTAGG-GTGTTTCAATGTCGTATCTTAA 305
                       ***   *   *** *   * * * *    * * **  ***  *   *  **    *  *

consensus_1297#0      GTGGCAGCGTTATTGAAACGAGGCGATAACAATCGTTGTTTGCAATGGGATGTTGTAGAT 476
consensus_1297#1      ATGGAGA--ACACCGAACTCTGGTTGCATCGATCGGGGA--------------------- 342
                       ***       *  ***    **    * * ****  *                      

consensus_1297#0      AAAAGTCCGTGCGAGGACGGGTCTACGCTCTACTGTTCCACGATTAGCGGCCAACAGTGG 536
consensus_1297#1      ------------------------------------------------------------
                                                                                  

consensus_1297#0      GAGAACGTTATAATACTTTCTGGCACTGCCTTAGGTCTTTTGCTGATCTGGTCCGTTGAT 596
consensus_1297#1      ------------------------------------------------------------
                                                                                  

consensus_1297#0      GGTCCAAACCGGGGCAAAGTGTTAACGAGTGTCTCTGCCCATAACGGGGTCATTTTCTCG 656
consensus_1297#1      ------------------------------------------------------------
                                                                                  

consensus_1297#0      ATATCGTG 664
consensus_1297#1      --------