cluster # 1325

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Anopheles gambiae
cluster # 1325 cluster # 1325 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1325#0 length = 557 sequences # 1

consensus_1325#1 length = 341 sequences # 1

consensusID : consensus_1325#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CCGGAATTTCTTTCTGAAAGGTGGACAGAATTACTTGTTTTAAGCGTATTGAGAGTATCATTTCGAACATGATTTAGTGGAAATATGTACTCTTAATGTTTGGTTTTTTTCCTTTCATTTCTTATAAATTTGAATGTGGCCAACCCCGAATCTCTTGTCTGTTTCGAATTGGTCTTAAATCGGATGAATGGTTCGAAATTGTCACACAAAAATTGATTGTGCTTCTGGCAGGAAAAAGAACAGAAACGACAGCAGGCACTTCTGCAGAAGGAACAGGAACTTGCCAAGCAGAAGGAGTTGATGTATGCAATGGAAATGGAACGTGAAAGGCGAAGGCAACATATGGCCCTGATTAAACAGTTAGAGCTGCGTCGCAAATTCGAAGAGAAGGAAAAGAAGAAACACCAGGTAATTCTGGATAAGTTGATCCAACGGGAGAAGAAACTCGTGATGAGAAAGCGGGACACAAACATTCTAGCCGAATTGAGAAAACCTCAAGAGGACTCCGAGATCGTGGATCAAACGGTGTTGCCTTCTTTCTCAAGAATTCCTGGCCT]

[+] EMBL BM581043             [CCGGAATTTCTTTCTGAAAGGTGGACAGAATTACTTGTTTTAAGCGTATTGAGAGTATCATTTCGAACATGATTTAGTGGAAATATGTACTCTTAATGTTTGGTTTTTTTCCTTTCATTTCTTATAAATTTGAATGTGGCCAACCCCGAATCTCTTGTCTGTTTCGAATTGGTCTTAAATCGGATGAATGGTTCGAAATTGTCACACAAAAATTGATTGTGCTTCTGGCAGGAAAAAGAACAGAAACGACAGCAGGCACTTCTGCAGAAGGAACAGGAACTTGCCAAGCAGAAGGAGTTGATGTATGCAATGGAAATGGAACGTGAAAGGCGAAGGCAACATATGGCCCTGATTAAACAGTTAGAGCTGCGTCGCAAATTCGAAGAGAAGGAAAAGAAGAAACACCAGGTAATTCTGGATAAGTTGATCCAACGGGAGAAGAAACTCGTGATGAGAAAGCGGGACACAAACATTCTAGCCGAATTGAGAAAACCTCAAGAGGACTCCGAGATCGTGGATCAAACGGTGTTGCCTTCTTTCTCAAGAATTCCTGGCCT]




>consensus_1325#0
CCGGAATTTCTTTCTGAAAGGTGGACAGAATTACTTGTTTTAAGCGTATTGAGAGTATCA
TTTCGAACATGATTTAGTGGAAATATGTACTCTTAATGTTTGGTTTTTTTCCTTTCATTT
CTTATAAATTTGAATGTGGCCAACCCCGAATCTCTTGTCTGTTTCGAATTGGTCTTAAAT
CGGATGAATGGTTCGAAATTGTCACACAAAAATTGATTGTGCTTCTGGCAGGAAAAAGAA
CAGAAACGACAGCAGGCACTTCTGCAGAAGGAACAGGAACTTGCCAAGCAGAAGGAGTTG
ATGTATGCAATGGAAATGGAACGTGAAAGGCGAAGGCAACATATGGCCCTGATTAAACAG
TTAGAGCTGCGTCGCAAATTCGAAGAGAAGGAAAAGAAGAAACACCAGGTAATTCTGGAT
AAGTTGATCCAACGGGAGAAGAAACTCGTGATGAGAAAGCGGGACACAAACATTCTAGCC
GAATTGAGAAAACCTCAAGAGGACTCCGAGATCGTGGATCAAACGGTGTTGCCTTCTTTC
TCAAGAATTCCTGGCCT

consensusID : consensus_1325#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [TGCGGGACGCAAAGAAGCTGGCCAAGGAAGAGATGAACAAAAACAAGGAAAAGGCACGACAGGCAAAGGAAGCTGAACGGAATGAACGCTTGGAGCAGCAGCGCAAAGAGAGGGAACTGAAAAATCAACAGGCACTAGAGGCAAAGAAGAAGCGCGAAGAGGAGCTTGCACGACAGAAAGCGGAGGAAGCTGCCCGTAAAGCACAGGAAAAAGAACAAAAACGACAGCAGGCACTTCTGCAGAAGGAACAGGAACTTGCCAAGCAGAAGGAGTTGATGTATGCAATGGAAATGGAACGTGAAAGACGAAGGCAACATATGGCCCTGATAAAACAGTTAGAG]

[-] EMBL AGA284690            [TGCGGGACGCAAAGAAGCTGGCCAAGGAAGAGATGAACAAAAACAAGGAAAAGGCACGACAGGCAAAGGAAGCTGAACGGAATGAACGCTTGGAGCAGCAGCGCAAAGAGAGGGAACTGAAAAATCAACAGGCACTAGAGGCAAAGAAGAAGCGCGAAGAGGAGCTTGCACGACAGAAAGCGGAGGAAGCTGCCCGTAAAGCACAGGAAAAAGAACAAAAACGACAGCAGGCACTTCTGCAGAAGGAACAGGAACTTGCCAAGCAGAAGGAGTTGATGTATGCAATGGAAATGGAACGTGAAAGACGAAGGCAACATATGGCCCTGATAAAACAGTTAGAG]




>consensus_1325#1
TGCGGGACGCAAAGAAGCTGGCCAAGGAAGAGATGAACAAAAACAAGGAAAAGGCACGAC
AGGCAAAGGAAGCTGAACGGAATGAACGCTTGGAGCAGCAGCGCAAAGAGAGGGAACTGA
AAAATCAACAGGCACTAGAGGCAAAGAAGAAGCGCGAAGAGGAGCTTGCACGACAGAAAG
CGGAGGAAGCTGCCCGTAAAGCACAGGAAAAAGAACAAAAACGACAGCAGGCACTTCTGC
AGAAGGAACAGGAACTTGCCAAGCAGAAGGAGTTGATGTATGCAATGGAAATGGAACGTG
AAAGACGAAGGCAACATATGGCCCTGATAAAACAGTTAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1325#0      CCGGAATTTCTTTCTGAAAGGTGGACAGAATTACTTGTTTTAAGCGTATTGAGAGTATCA 60
consensus_1325#1      --------------TGCGGGACGCAAAGAA--GCTGGC--CAAGGAAGAGATGAACAAAA 42
                                    **   *  * * ****   ** *    ***        **  *  *

consensus_1325#0      TTTCGAACATGATTTAGTGGAAATATGTACTCTTAATGTTTGGTTTTTTTCCTTTCATTT 120
consensus_1325#1      ACAAGGAAAAGGCACGACAGGCA-AAGGAAGCTGAACGGAATGAACGCTTGGAGCAGCAG 101
                          * * * *        *  * * * *  ** ** *    *     **          

consensus_1325#0      CTTATAAATTTGAATGTGGCCAACCCCGAATCTCTTGTCTGTTTCGAATTGGTCTTAAAT 180
consensus_1325#1      CGCAAAGAGAGGGAACTGAAAAATCAACAGGCACTAGA--GGCAAAGAAGAAGCGCGAAG 159
                      *  * * *   * *  **   ** *   *  * ** *   *      *     *   ** 

consensus_1325#0      CGGATGAATGGTTCGAAATTGTCACACAAAAATTGATTGTGCTTCTGGCAGGAAAAAGAA 240
consensus_1325#1      AGGA--GCTTGCACGACAGAAAGCGGAGGAAGCTGCCCGTAAAGC--ACAGGAAAAAGAA 215
                       ***    * *  *** *           **  **   **    *   ************

consensus_1325#0      CAGAAACGACAGCAGGCACTTCTGCAGAAGGAACAGGAACTTGCCAAGCAGAAGGAGTTG 300
consensus_1325#1      CAAAAACGACAGCAGGCACTTCTGCAGAAGGAACAGGAACTTGCCAAGCAGAAGGAGTTG 275
                      ** *********************************************************

consensus_1325#0      ATGTATGCAATGGAAATGGAACGTGAAAGGCGAAGGCAACATATGGCCCTGATTAAACAG 360
consensus_1325#1      ATGTATGCAATGGAAATGGAACGTGAAAGACGAAGGCAACATATGGCCCTGATAAAACAG 335
                      ***************************** *********************** ******

consensus_1325#0      TTAGAGCTGCGTCGCAAATTCGAAGAGAAGGAAAAGAAGAAACACCAGGTAATTCTGGAT 420
consensus_1325#1      TTAGAG------------------------------------------------------ 341
                      ******                                                      

consensus_1325#0      AAGTTGATCCAACGGGAGAAGAAACTCGTGATGAGAAAGCGGGACACAAACATTCTAGCC 480
consensus_1325#1      ------------------------------------------------------------
                                                                                  

consensus_1325#0      GAATTGAGAAAACCTCAAGAGGACTCCGAGATCGTGGATCAAACGGTGTTGCCTTCTTTC 540
consensus_1325#1      ------------------------------------------------------------
                                                                                  

consensus_1325#0      TCAAGAATTCCTGGCCT 557
consensus_1325#1      -----------------