cluster # 1331

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Anopheles gambiae
cluster # 1331 cluster # 1331 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1331#0 length = 968 sequences # 1

consensus_1331#1 length = 402 sequences # 1

consensusID : consensus_1331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 968
fasta sequence

                              [GAGAAGAGAAAGAACGGTGCGGTGCGTACAATTTGTGACCAAGTCGTGTGGAAAATAACACATTTTAGGCGTACAAAGTGTATCTCTTCTATGCTAGTCTTCGTTCGTAGCCATGGAAAAACAGGACGACTACAAAAGCCGCAAATCGCCGGCGGAAAAAGGTTCGAAGAAGAAAAGTGACCGCAAATCACGCTCCCGGAGCCGAAGCCGTAGCGCCAGCCGCGCGGACAAATCGAAAAAGCGGTTCCTAACTTCCCGCCCGAGCCGAAACCGACCAAAGCGGAGAAGAAGGCACCGAAGCCGTTTAGCCGCTCGGACGGTGGAAGTTCCACGAGTAAAAAGAGCAAAGCCTCATCGAGCAGTGCAGGCAGCAAAGGAAGCTCTACCGAGAAGGGTAGCGCGCCCAAGAAGCTTCCCTTTATTGGCCGCATGCCTGTGTTTAAAAAGCAGCAGGCAGACAACGCGAAGAAGGAAGAAGCGGCAGCAGCTGCAGCTGTGGCGACAGTTCCAACGGCCGAGGAAGCAATGAGGCTGGAGCTGTGCTTGAGCAGCAAACCGAAATGGTTTCCGCGCACTCCACGAGTCAATGGGCGGTGGCTTTGCTTCGGATAATGCCACCGAAGCGGCGGCGGCAACGTTAGCCATGATGCAGGGCCAGGAGGGCGTGTATGATCCGCAGCAAATCGCACAAACCGCAGAAACCGACGCGTACCAGTATGCGAATCTCGAACTGGGCGAAACGGTCACACCGCAAGACATGGACTTGGTCAGTGCGGAGGAGCAAATGGGTGAGGCGGAGATGGTGGTGGACCAGGGGGAGAGTAATGCCGAAGACAGCACGACGCTTGCCACCGACAGCGCCCCGCAGAAGGACCCGGATGCGTACGTTTCGGCCGATGGGCAAGTGCCGTTGCCGAAAAATTTCCAAGAAGCGCTCGACATCATTTACGATGGTGGCGACAAGCCGA]

[+] EMBL CNS09R0R             [GAGAAGAGAAAGAACGGTGCGGTGCGTACAATTTGTGACCAAGTCGTGTGGAAAATAACACATTTTAGGCGTACAAAGTGTATCTCTTCTATGCTAGTCTTCGTTCGTAGCCATGGAAAAACAGGACGACTACAAAAGCCGCAAATCGCCGGCGGAAAAAGGTTCGAAGAAGAAAAGTGACCGCAAATCACGCTCCCGGAGCCGAAGCCGTAGCGCCAGCCGCGCGGACAAATCGAAAAAGCGGTTCCTAACTTCCCGCCCGAGCCGAAACCGACCAAAGCGGAGAAGAAGGCACCGAAGCCGTTTAGCCGCTCGGACGGTGGAAGTTCCACGAGTAAAAAGAGCAAAGCCTCATCGAGCAGTGCAGGCAGCAAAGGAAGCTCTACCGAGAAGGGTAGCGCGCCCAAGAAGCTTCCCTTTATTGGCCGCATGCCTGTGTTTAAAAAGCAGCAGGCAGACAACGCGAAGAAGGAAGAAGCGGCAGCAGCTGCAGCTGTGGCGACAGTTCCAACGGCCGAGGAAGCAATGAGGCTGGAGCTGTGCTTGAGCAGCAAACCGAAATGGTTTCCGCGCACTCCACGAGTCAATGGGCGGTGGCTTTGCTTCGGATAATGCCACCGAAGCGGCGGCGGCAACGTTAGCCATGATGCAGGGCCAGGAGGGCGTGTATGATCCGCAGCAAATCGCACAAACCGCAGAAACCGACGCGTACCAGTATGCGAATCTCGAACTGGGCGAAACGGTCACACCGCAAGACATGGACTTGGTCAGTGCGGAGGAGCAAATGGGTGAGGCGGAGATGGTGGTGGACCAGGGGGAGAGTAATGCCGAAGACAGCACGACGCTTGCCACCGACAGCGCCCCGCAGAAGGACCCGGATGCGTACGTTTCGGCCGATGGGCAAGTGCCGTTGCCGAAAAATTTCCAAGAAGCGCTCGACATCATTTACGATGGTGGCGACAAGCCGA]




>consensus_1331#0
GAGAAGAGAAAGAACGGTGCGGTGCGTACAATTTGTGACCAAGTCGTGTGGAAAATAACA
CATTTTAGGCGTACAAAGTGTATCTCTTCTATGCTAGTCTTCGTTCGTAGCCATGGAAAA
ACAGGACGACTACAAAAGCCGCAAATCGCCGGCGGAAAAAGGTTCGAAGAAGAAAAGTGA
CCGCAAATCACGCTCCCGGAGCCGAAGCCGTAGCGCCAGCCGCGCGGACAAATCGAAAAA
GCGGTTCCTAACTTCCCGCCCGAGCCGAAACCGACCAAAGCGGAGAAGAAGGCACCGAAG
CCGTTTAGCCGCTCGGACGGTGGAAGTTCCACGAGTAAAAAGAGCAAAGCCTCATCGAGC
AGTGCAGGCAGCAAAGGAAGCTCTACCGAGAAGGGTAGCGCGCCCAAGAAGCTTCCCTTT
ATTGGCCGCATGCCTGTGTTTAAAAAGCAGCAGGCAGACAACGCGAAGAAGGAAGAAGCG
GCAGCAGCTGCAGCTGTGGCGACAGTTCCAACGGCCGAGGAAGCAATGAGGCTGGAGCTG
TGCTTGAGCAGCAAACCGAAATGGTTTCCGCGCACTCCACGAGTCAATGGGCGGTGGCTT
TGCTTCGGATAATGCCACCGAAGCGGCGGCGGCAACGTTAGCCATGATGCAGGGCCAGGA
GGGCGTGTATGATCCGCAGCAAATCGCACAAACCGCAGAAACCGACGCGTACCAGTATGC
GAATCTCGAACTGGGCGAAACGGTCACACCGCAAGACATGGACTTGGTCAGTGCGGAGGA
GCAAATGGGTGAGGCGGAGATGGTGGTGGACCAGGGGGAGAGTAATGCCGAAGACAGCAC
GACGCTTGCCACCGACAGCGCCCCGCAGAAGGACCCGGATGCGTACGTTTCGGCCGATGG
GCAAGTGCCGTTGCCGAAAAATTTCCAAGAAGCGCTCGACATCATTTACGATGGTGGCGA
CAAGCCGA

consensusID : consensus_1331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [GATCGGGATCGTGACCGTGACCGCGACCGAGACAGTAGACGTAGTGTCGATCGGCGCGACCGATGGGGTCGACGGGATAGCCCGGATCGGTACGGCGGACGTGACCGTGACCGTGACCGGGGCAGAAGAACCGATTACCGCGACTATCGTGATCGGCGCGATAGACGTCGCAGTCGTTCGAGGGGACGCCGTAGTCGCAGTGGAAGCGGCGGTCGAAGGTTCCGCCGTAGGTCGTATTCGCGGTCGCGCACACCGCGTTCACGATCCCGCAGCCGGTCCCGTACCAGCCGTGGTGGCAGCCGTCATCGACAAATCGAGAAAGCGGTTCCTAACTTCCCGCCCGAGCCGAAACCGACCAAAGCGGAGAAGAAGGCACCGAAGCCGTTTAGCCGCTCGGACGGT]

[-] EMBL AGA284751            [GATCGGGATCGTGACCGTGACCGCGACCGAGACAGTAGACGTAGTGTCGATCGGCGCGACCGATGGGGTCGACGGGATAGCCCGGATCGGTACGGCGGACGTGACCGTGACCGTGACCGGGGCAGAAGAACCGATTACCGCGACTATCGTGATCGGCGCGATAGACGTCGCAGTCGTTCGAGGGGACGCCGTAGTCGCAGTGGAAGCGGCGGTCGAAGGTTCCGCCGTAGGTCGTATTCGCGGTCGCGCACACCGCGTTCACGATCCCGCAGCCGGTCCCGTACCAGCCGTGGTGGCAGCCGTCATCGACAAATCGAGAAAGCGGTTCCTAACTTCCCGCCCGAGCCGAAACCGACCAAAGCGGAGAAGAAGGCACCGAAGCCGTTTAGCCGCTCGGACGGT]




>consensus_1331#1
GATCGGGATCGTGACCGTGACCGCGACCGAGACAGTAGACGTAGTGTCGATCGGCGCGAC
CGATGGGGTCGACGGGATAGCCCGGATCGGTACGGCGGACGTGACCGTGACCGTGACCGG
GGCAGAAGAACCGATTACCGCGACTATCGTGATCGGCGCGATAGACGTCGCAGTCGTTCG
AGGGGACGCCGTAGTCGCAGTGGAAGCGGCGGTCGAAGGTTCCGCCGTAGGTCGTATTCG
CGGTCGCGCACACCGCGTTCACGATCCCGCAGCCGGTCCCGTACCAGCCGTGGTGGCAGC
CGTCATCGACAAATCGAGAAAGCGGTTCCTAACTTCCCGCCCGAGCCGAAACCGACCAAA
GCGGAGAAGAAGGCACCGAAGCCGTTTAGCCGCTCGGACGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1331#0      ------------------------------------------------------------
consensus_1331#1      GATCGGGATCGTGACCGTGACCGCGACCGAGACAGTAGACGTAGTGTCGATCGGCGCGAC 60
                                                                                  

consensus_1331#0      -------------GAGAAGAGAAAGAACGGTGCGGTGCGTACAATTTGTGACCAAGTCGT 47
consensus_1331#1      CGATGGGGTCGACGGGATAGCCCGGATCGGTACGGCGGACGTGACC-GTGACCGTGACCG 119
                                   * **       ** **** *** *      *   ******  * *  

consensus_1331#0      GTGGAAAATAACACATTTTAGGCGTACAAAGTGTATCTCTTCTATGCTAGTCT---TCGT 104
consensus_1331#1      GGGCAGAAGAAC-CGATTACCGCGACTATCGTG-ATCGGCGCGATAGACGTCGCAGTCGT 177
                      * * * ** *** *  **   ***   *  *** ***    * **    ***    ****

consensus_1331#0      TCGTAGCCATGGAAAAACAGGA-CGACTACAAAAGCCGCAAAT--CGCCGGCGGAAAAAG 161
consensus_1331#1      TCGAGGGGACGCCGTAGTCGCAGTGGAAGCGGCGGTCGAAGGTTCCGCCGTAGGTCGTAT 237
                      ***  *  * *    *   * *  *    *    * ** *  *  *****  **    * 

consensus_1331#0      GTTCGAAGAAGAAAAGTGACCGCA-AATCACGCTCCCGGAGCCGAA---GCCGTAGCGCC 217
consensus_1331#1      TCGCGGTCGCGCACACCGCGTTCACGATCCCGCAGCCGGTCCCGTACCAGCCGTGGTGGC 297
                         **     * * *  *    **  *** ***  ****  *** *   ***** * * *

consensus_1331#0      AGCCG-CGCGGACAAATCGAAAAAGCGGTTCCTAACTTCCCGCCCGAGCCGAAACCGACC 276
consensus_1331#1      AGCCGTCATCGACAAATCGAGAAAGCGGTTCCTAACTTCCCGCCCGAGCCGAAACCGACC 357
                      ***** *   ********** ***************************************

consensus_1331#0      AAAGCGGAGAAGAAGGCACCGAAGCCGTTTAGCCGCTCGGACGGTGGAAGTTCCACGAGT 336
consensus_1331#1      AAAGCGGAGAAGAAGGCACCGAAGCCGTTTAGCCGCTCGGACGGT--------------- 402
                      *********************************************               

consensus_1331#0      AAAAAGAGCAAAGCCTCATCGAGCAGTGCAGGCAGCAAAGGAAGCTCTACCGAGAAGGGT 396
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      AGCGCGCCCAAGAAGCTTCCCTTTATTGGCCGCATGCCTGTGTTTAAAAAGCAGCAGGCA 456
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      GACAACGCGAAGAAGGAAGAAGCGGCAGCAGCTGCAGCTGTGGCGACAGTTCCAACGGCC 516
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      GAGGAAGCAATGAGGCTGGAGCTGTGCTTGAGCAGCAAACCGAAATGGTTTCCGCGCACT 576
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      CCACGAGTCAATGGGCGGTGGCTTTGCTTCGGATAATGCCACCGAAGCGGCGGCGGCAAC 636
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      GTTAGCCATGATGCAGGGCCAGGAGGGCGTGTATGATCCGCAGCAAATCGCACAAACCGC 696
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      AGAAACCGACGCGTACCAGTATGCGAATCTCGAACTGGGCGAAACGGTCACACCGCAAGA 756
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      CATGGACTTGGTCAGTGCGGAGGAGCAAATGGGTGAGGCGGAGATGGTGGTGGACCAGGG 816
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      GGAGAGTAATGCCGAAGACAGCACGACGCTTGCCACCGACAGCGCCCCGCAGAAGGACCC 876
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      GGATGCGTACGTTTCGGCCGATGGGCAAGTGCCGTTGCCGAAAAATTTCCAAGAAGCGCT 936
consensus_1331#1      ------------------------------------------------------------
                                                                                  

consensus_1331#0      CGACATCATTTACGATGGTGGCGACAAGCCGA 968
consensus_1331#1      --------------------------------