cluster # 1364

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Anopheles gambiae
cluster # 1364 cluster # 1364 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1364#0 length = 640 sequences # 1

consensus_1364#1 length = 625 sequences # 1

consensusID : consensus_1364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CCGAACAAAGCGGCCATTCGGGCAAAATATTCAGGGAATTTTTATTTCTCTGATTTGCTACAGCCGGTCTTCTCGCTAACTAAACGATATCGCCCATCGAATAGGCTAGTAATAACGCGCGACAGCTGCTACTGTGGCGGACAAACCTAGTATAGTGTAGAAATTGGAAGATTCAATCAGGGCGGCATGAACGAAAGGACGGTGCGGCGTTGTTTGCGGATATGTTTCGCATTTTTATGTGTTAACAGTGTATTTGCTTTTCCGGAGCAAGGAAAATGGGATTTTGTGTTAACGAAGCGGAACACGTATATTCCAATACCGAAATCACTGTACGATGGATTCAGCATTTATGTACAGGTCACTTGCGAGGCAGCACAGACCCGAACGAGTGCCAGCCCGGAAGTACGTGTGAACATTTCCTGGAGCCTGCGGGAGCTAAAATGTTGGCAAGAATATGTGAGCTATTCCTATTTGCTTCAGGATGAACGTTTTCCTACGCGAAACAACATCACGCAGATCGACTCTGCAGTGTATCCGAACGTGTGCAGCAATGATCGGCACATTGTAATTCCCGGAAACAAAGTTCGCTGCAGTCAACAGTCCCCTTCCGGCACCGTCTCGAAGAAGCATCGGATCGCCA]

[+] EMBL BM642114             [CCGAACAAAGCGGCCATTCGGGCAAAATATTCAGGGAATTTTTATTTCTCTGATTTGCTACAGCCGGTCTTCTCGCTAACTAAACGATATCGCCCATCGAATAGGCTAGTAATAACGCGCGACAGCTGCTACTGTGGCGGACAAACCTAGTATAGTGTAGAAATTGGAAGATTCAATCAGGGCGGCATGAACGAAAGGACGGTGCGGCGTTGTTTGCGGATATGTTTCGCATTTTTATGTGTTAACAGTGTATTTGCTTTTCCGGAGCAAGGAAAATGGGATTTTGTGTTAACGAAGCGGAACACGTATATTCCAATACCGAAATCACTGTACGATGGATTCAGCATTTATGTACAGGTCACTTGCGAGGCAGCACAGACCCGAACGAGTGCCAGCCCGGAAGTACGTGTGAACATTTCCTGGAGCCTGCGGGAGCTAAAATGTTGGCAAGAATATGTGAGCTATTCCTATTTGCTTCAGGATGAACGTTTTCCTACGCGAAACAACATCACGCAGATCGACTCTGCAGTGTATCCGAACGTGTGCAGCAATGATCGGCACATTGTAATTCCCGGAAACAAAGTTCGCTGCAGTCAACAGTCCCCTTCCGGCACCGTCTCGAAGAAGCATCGGATCGCCA]




>consensus_1364#0
CCGAACAAAGCGGCCATTCGGGCAAAATATTCAGGGAATTTTTATTTCTCTGATTTGCTA
CAGCCGGTCTTCTCGCTAACTAAACGATATCGCCCATCGAATAGGCTAGTAATAACGCGC
GACAGCTGCTACTGTGGCGGACAAACCTAGTATAGTGTAGAAATTGGAAGATTCAATCAG
GGCGGCATGAACGAAAGGACGGTGCGGCGTTGTTTGCGGATATGTTTCGCATTTTTATGT
GTTAACAGTGTATTTGCTTTTCCGGAGCAAGGAAAATGGGATTTTGTGTTAACGAAGCGG
AACACGTATATTCCAATACCGAAATCACTGTACGATGGATTCAGCATTTATGTACAGGTC
ACTTGCGAGGCAGCACAGACCCGAACGAGTGCCAGCCCGGAAGTACGTGTGAACATTTCC
TGGAGCCTGCGGGAGCTAAAATGTTGGCAAGAATATGTGAGCTATTCCTATTTGCTTCAG
GATGAACGTTTTCCTACGCGAAACAACATCACGCAGATCGACTCTGCAGTGTATCCGAAC
GTGTGCAGCAATGATCGGCACATTGTAATTCCCGGAAACAAAGTTCGCTGCAGTCAACAG
TCCCCTTCCGGCACCGTCTCGAAGAAGCATCGGATCGCCA

consensusID : consensus_1364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGTAAACAAAGCGGCCATTCGGGCAAAATATTCATGGGATTTTTATTTCTCTGATTTGCTACAGCCGGTCTTCTCGCTAACTAAACGATATCGCCCATCGAATAGGCTAGTAATAACGCGCGACAGCTGCTACTGTGGCGGACAAACCTAGTATAGTGTAGAAATTGGAAGATTCAAGCAGGCAGGCATGAACGAAAGGACGGCGCGGCGTTGTTTGCGGATATGTTTCGCATTTTTATGTGTTAACAGTGTATTTGCTTTTCCGGAGCAAGGAAAATGGGATTTTGTGTTAACAAAGCGGAACACGTATATTCCAATACCGAAATCACTGTACGATGGATTCAGCATTTATGTACAGGCATTTTAAAGTCACTTGCGAGGCAGCACAGTCCCGAACGAGTGCCAGCCCGGAAGTACGTGTGAACATTTCCTGGAGCCTGCGAGAGCTAAAATGTTGGCAAGAATATGTGAGCTATTCCTATTTGCTTCAGGATGAACGTTTTCCTACGCGAAACAACATCACGCAGATCGACTCTGCAGTGTATCCGAACGTGTGCAGCAATGATCGGCACATTGTAATTCCGGAAACAAAGTTCGCTGCAGTCAACAGTCCCCTTCCGGCAC]

[+] EMBL BM633060             [CCGTAAACAAAGCGGCCATTCGGGCAAAATATTCATGGGATTTTTATTTCTCTGATTTGCTACAGCCGGTCTTCTCGCTAACTAAACGATATCGCCCATCGAATAGGCTAGTAATAACGCGCGACAGCTGCTACTGTGGCGGACAAACCTAGTATAGTGTAGAAATTGGAAGATTCAAGCAGGCAGGCATGAACGAAAGGACGGCGCGGCGTTGTTTGCGGATATGTTTCGCATTTTTATGTGTTAACAGTGTATTTGCTTTTCCGGAGCAAGGAAAATGGGATTTTGTGTTAACAAAGCGGAACACGTATATTCCAATACCGAAATCACTGTACGATGGATTCAGCATTTATGTACAGGCATTTTAAAGTCACTTGCGAGGCAGCACAGTCCCGAACGAGTGCCAGCCCGGAAGTACGTGTGAACATTTCCTGGAGCCTGCGAGAGCTAAAATGTTGGCAAGAATATGTGAGCTATTCCTATTTGCTTCAGGATGAACGTTTTCCTACGCGAAACAACATCACGCAGATCGACTCTGCAGTGTATCCGAACGTGTGCAGCAATGATCGGCACATTGTAATTCCGGAAACAAAGTTCGCTGCAGTCAACAGTCCCCTTCCGGCAC]




>consensus_1364#1
CCGTAAACAAAGCGGCCATTCGGGCAAAATATTCATGGGATTTTTATTTCTCTGATTTGC
TACAGCCGGTCTTCTCGCTAACTAAACGATATCGCCCATCGAATAGGCTAGTAATAACGC
GCGACAGCTGCTACTGTGGCGGACAAACCTAGTATAGTGTAGAAATTGGAAGATTCAAGC
AGGCAGGCATGAACGAAAGGACGGCGCGGCGTTGTTTGCGGATATGTTTCGCATTTTTAT
GTGTTAACAGTGTATTTGCTTTTCCGGAGCAAGGAAAATGGGATTTTGTGTTAACAAAGC
GGAACACGTATATTCCAATACCGAAATCACTGTACGATGGATTCAGCATTTATGTACAGG
CATTTTAAAGTCACTTGCGAGGCAGCACAGTCCCGAACGAGTGCCAGCCCGGAAGTACGT
GTGAACATTTCCTGGAGCCTGCGAGAGCTAAAATGTTGGCAAGAATATGTGAGCTATTCC
TATTTGCTTCAGGATGAACGTTTTCCTACGCGAAACAACATCACGCAGATCGACTCTGCA
GTGTATCCGAACGTGTGCAGCAATGATCGGCACATTGTAATTCCGGAAACAAAGTTCGCT
GCAGTCAACAGTCCCCTTCCGGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1364#0      --CCGAACAAAGCGGCCATTCGGGCAAAATATTCAGGGAATTTTTATTTCTCTGATTTGC 58
consensus_1364#1      CCGTAAACAAAGCGGCCATTCGGGCAAAATATTCATGGGATTTTTATTTCTCTGATTTGC 60
                           ****************************** ** *********************

consensus_1364#0      TACAGCCGGTCTTCTCGCTAACTAAACGATATCGCCCATCGAATAGGCTAGTAATAACGC 118
consensus_1364#1      TACAGCCGGTCTTCTCGCTAACTAAACGATATCGCCCATCGAATAGGCTAGTAATAACGC 120
                      ************************************************************

consensus_1364#0      GCGACAGCTGCTACTGTGGCGGACAAACCTAGTATAGTGTAGAAATTGGAAGATTCAATC 178
consensus_1364#1      GCGACAGCTGCTACTGTGGCGGACAAACCTAGTATAGTGTAGAAATTGGAAGATTCAAGC 180
                      ********************************************************** *

consensus_1364#0      AGGGCGGCATGAACGAAAGGACGGTGCGGCGTTGTTTGCGGATATGTTTCGCATTTTTAT 238
consensus_1364#1      AGGCAGGCATGAACGAAAGGACGGCGCGGCGTTGTTTGCGGATATGTTTCGCATTTTTAT 240
                      ***  ******************* ***********************************

consensus_1364#0      GTGTTAACAGTGTATTTGCTTTTCCGGAGCAAGGAAAATGGGATTTTGTGTTAACGAAGC 298
consensus_1364#1      GTGTTAACAGTGTATTTGCTTTTCCGGAGCAAGGAAAATGGGATTTTGTGTTAACAAAGC 300
                      ******************************************************* ****

consensus_1364#0      GGAACACGTATATTCCAATACCGAAATCACTGTACGATGGATTCAGCATTTATGTACAGG 358
consensus_1364#1      GGAACACGTATATTCCAATACCGAAATCACTGTACGATGGATTCAGCATTTATGTACAGG 360
                      ************************************************************

consensus_1364#0      ----------TCACTTGCGAGGCAGCACAGACCCGAACGAGTGCCAGCCCGGAAGTACGT 408
consensus_1364#1      CATTTTAAAGTCACTTGCGAGGCAGCACAGTCCCGAACGAGTGCCAGCCCGGAAGTACGT 420
                                ******************** *****************************

consensus_1364#0      GTGAACATTTCCTGGAGCCTGCGGGAGCTAAAATGTTGGCAAGAATATGTGAGCTATTCC 468
consensus_1364#1      GTGAACATTTCCTGGAGCCTGCGAGAGCTAAAATGTTGGCAAGAATATGTGAGCTATTCC 480
                      *********************** ************************************

consensus_1364#0      TATTTGCTTCAGGATGAACGTTTTCCTACGCGAAACAACATCACGCAGATCGACTCTGCA 528
consensus_1364#1      TATTTGCTTCAGGATGAACGTTTTCCTACGCGAAACAACATCACGCAGATCGACTCTGCA 540
                      ************************************************************

consensus_1364#0      GTGTATCCGAACGTGTGCAGCAATGATCGGCACATTGTAATTCCCGGAAACAAAGTTCGC 588
consensus_1364#1      GTGTATCCGAACGTGTGCAGCAATGATCGGCACATTGTAATTCC-GGAAACAAAGTTCGC 599
                      ******************************************** ***************

consensus_1364#0      TGCAGTCAACAGTCCCCTTCCGGCACCGTCTCGAAGAAGCATCGGATCGCCA 640
consensus_1364#1      TGCAGTCAACAGTCCCCTTCCGGCAC-------------------------- 625
                      **************************