These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGCCCACGCGTCCGGTAAAATGTGGCTGTACAACTGTGCTGCAATAAAGCGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCAGAACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGAAAACGTTAAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCTTGGTCCGCGAAAGTCGGTGACCATTCGCGTATCCCAAAGCCACCTCCAACATCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGCACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGA] [+] EMBL BM654783 [CCGCCCACGCGTCCGGTAAAATGTGGCTGTACAACTGTGCTGCAATAAAGCGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCAGAACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGAAAACGTTAAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCTTGGTCCGCGAAAGTCGGTGACCATTCGCGTATCCCAAAGCCACCTCCAACATCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGCACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGA] consensusID : consensus_1367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [CCGCGGACGCGTGGGGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCGGAACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGATCAGCACGTTGAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCCTGGTCCGCGAAAGTCGGTGACCATTCTCGTATCCCAAAGCCACCTCAAACAGCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGTACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGATT] [+] EMBL BM593542 [CCGCGGACGCGTGGGGGACTGTAGGTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCGTGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAGACAAGAAGATTGAATCGTTCGACTACGAGTATTCGGAACAGAGAAATTTTGAAGTTAAATTTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGATCAGCACGTTGAAAGAATGGCAAACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTACTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAAAACTGGACCATTCTAGTGAACCCTGGTCCGCGAAAGTCGGTGACCATTCTCGTATCCCAAAGCCACCTCAAACAGCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTACCTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATTTGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGTACAATTCATCTAACCTTTCCGATGGCATTCTACGCGACAGTCAAATGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1367#0 CCGCCCACGCGTCCGGTAAAATGTGGCTGTACAACTGTGCTGCAATAAAGCGGACTGTAG 60 consensus_1367#1 ------------------------------------CCGCGGACGCGTGGGGGACTGTAG 24 ** * * ********* consensus_1367#0 GTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCG 120 consensus_1367#1 GTAGCTTACATTGATCTTAGTAGCGCATGAGTTTTTACTGACATGGCACACAAGCAGCCG 84 ************************************************************ consensus_1367#0 TGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAG 180 consensus_1367#1 TGGATAGAACCTTCTGAACCTGAACAGAACAAAATATGTCCTACAGTCAAGAAGCGGGAG 144 ************************************************************ consensus_1367#0 ACAAGAAGATTGAATCGTTCGACTACGAGTATTCAGAACAGAGAAATTTTGAAGTTAAAT 240 consensus_1367#1 ACAAGAAGATTGAATCGTTCGACTACGAGTATTCGGAACAGAGAAATTTTGAAGTTAAAT 204 ********************************** ************************* consensus_1367#0 TTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGA---AAACGTTAAAAGAATGGCAA 297 consensus_1367#1 TTGCAGTGGAAAACACACACACTTCCAGGTTTGTTGATCAGCACGTTGAAAGAATGGCAA 264 ************************************* ***** ************ consensus_1367#0 ACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTA 357 consensus_1367#1 ACACCCAACCGACCAATGCATCGAAAATCCCTCCGCCTGGATTTAGTCGAAAACAGCTTA 324 ************************************************************ consensus_1367#0 CTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAA 417 consensus_1367#1 CTCCTTTCTACGAGAAAACAAAGCTACTGCGCACCGTTTTAGAAAGGCAAGTTACGCGAA 384 ************************************************************ consensus_1367#0 AACTGGACCATTCTAGTGAACCTTGGTCCGCGAAAGTCGGTGACCATTCGCGTATCCCAA 477 consensus_1367#1 AACTGGACCATTCTAGTGAACCCTGGTCCGCGAAAGTCGGTGACCATTCTCGTATCCCAA 444 ********************** ************************** ********** consensus_1367#0 AGCCACCTCCAACATCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTAC 537 consensus_1367#1 AGCCACCTCAAACAGCACACAGACAGCTTAACTTTTCCATTATGGATGAATCGAGAGTAC 504 ********* **** ********************************************* consensus_1367#0 CTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATT 597 consensus_1367#1 CTTCGTTGCAGGAACGTTCAGATCCGTCGTTGGGAATATTGCAACCAGAGGAAATGGATT 564 ************************************************************ consensus_1367#0 TGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGCACAATTCATCTAACCTTTCCG 657 consensus_1367#1 TGGGCAGCTTTCGCGTCAGCATCGATGATAGCGGTCGGTACAATTCATCTAACCTTTCCG 624 ************************************** ********************* consensus_1367#0 ATGGCATTCTACGCGACAGTCAAATGA-- 684 consensus_1367#1 ATGGCATTCTACGCGACAGTCAAATGATT 653 *************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||