These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACGTACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACTTAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGGGCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAGAAGATTTCTTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGTGTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGTGTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGTTAGTGTTAACACTTTCCTCAGTGGAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAAACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCCTTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTTTGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATGGTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT] [+] EMBL BX620124 [CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACGTACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACTTAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGGGCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAGAAGATTTCTTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGTGTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGTGTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGTTAGTGTTAACACTTTCCTCAGTGGAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAAACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCCTTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTTTGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATGGTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT] consensusID : consensus_1388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [AGGCAAGAATCGGCACGATGGATGAAGCACATCGCTATGCTGTCGTCCTATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTAGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGATTTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAAAGAATGAAAATGAAGGTATGGGGGAAAAGACGCAGTATCAATGATGAAATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTTATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCAACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTTCCTTTGGTATGCGGACACTTTTACACCACTCTCCTCCCGGGAGCAGATACTCCAGGACAAGCTGATCCCCGTAAAGAGTTGTAAATCACAAAGTTACAC] [+] EMBL BX468874 [AGGCAAGAATCGGCACGATGGATGAAGCACATCGCTATGCTGTCGTCCTATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTAGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGATTTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAAAGAATGAAAATGAAGGTATGGGGGAAAAGACGCAGTATCAATGATGAAATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTTATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCAACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTTCCTTTGGTATGCGGACACTTTTACACCACTCTCCTCCCGGGAGCAGATACTCCAGGACAAGCTGATCCCCGTAAAGAGTTGTAAATCACAAAGTTACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1388#0 CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACG 60 consensus_1388#1 ------------------------------------------------------------ consensus_1388#0 TACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACT 120 consensus_1388#1 ------------------------------------------------------------ consensus_1388#0 TAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGG 180 consensus_1388#1 ------------------------------------------------------------ consensus_1388#0 GCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAG 240 consensus_1388#1 ----------AGGCAAGAATCGGCACGATGG--ATGAAGCACATCGCTATGCTGTCGTCC 48 ** ****** ** * * ***** * * * * consensus_1388#0 AAGATTTC---TTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGT 297 consensus_1388#1 TATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTG-TGTGTAGTTGTC-CGT 106 * ** * ** ** * ** * ** *** * * * ** **** *** consensus_1388#0 GTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGT 357 consensus_1388#1 G-GTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGAT 165 * * ** * * * * * *** ** * * ** * * ** * consensus_1388#0 GTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGT-TAGTGTTAACACTTTCCTCAGTG 416 consensus_1388#1 TTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAA-A 224 * * * * * ** * * * * **** ** * * consensus_1388#0 GAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAA 476 consensus_1388#1 GAATGAAAATG------AAGGTATGGGGGA------AAAGACGCAGTATC--AATGATGA 270 ***** * * * *** ** ** * * * * ** * ** * * consensus_1388#0 ACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCC 536 consensus_1388#1 AATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTT 330 * * ** * * * ** * * **** * **** consensus_1388#0 TTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTT 596 consensus_1388#1 ATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCA 390 * ** * * * * * ** ** * ** *** ** * ** * ** consensus_1388#0 TGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATA-- 654 consensus_1388#1 -ACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTT-CCTTTGGTATGCG 448 * *** * ** * * * * ** *** * ****** consensus_1388#0 GGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATG 714 consensus_1388#1 GACACTTTTACACCACTCTCCTCCCGGGAGCA--GATACTC-CAGGACAAGCTGATCCCC 505 * * * * **** * * *** **** * * * * * consensus_1388#0 GTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT 754 consensus_1388#1 GTAAAGAGTTGTAAATCACAAAGTTACAC----------- 534 ** * * ** * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||