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Anopheles gambiae
cluster # 1388 cluster # 1388       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1388#0 length = 754 sequences # 1  
consensus_1388#1 length = 534 sequences # 1  

consensusID : consensus_1388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 754
fasta sequence
                              [CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACGTACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACTTAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGGGCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAGAAGATTTCTTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGTGTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGTGTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGTTAGTGTTAACACTTTCCTCAGTGGAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAAACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCCTTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTTTGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATGGTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT]

[+] EMBL BX620124             [CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACGTACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACTTAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGGGCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAGAAGATTTCTTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGTGTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGTGTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGTTAGTGTTAACACTTTCCTCAGTGGAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAAACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCCTTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTTTGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATGGTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT]


>consensus_1388#0 CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACG TACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACT TAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGG GCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAG AAGATTTCTTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGTGTG CATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGTGTA GAAGCTGGAAGAATATTTCAGCTTATGCACGGTTAGTGTTAACACTTTCCTCAGTGGAAT GCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAAACGG CGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCCTTTA ATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTTTGCC GGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATAGGCTGC TGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATGGTTACT ACCCTCCAAACTCCTCATCANAGCGACGGTAACT



consensusID : consensus_1388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence
                              [AGGCAAGAATCGGCACGATGGATGAAGCACATCGCTATGCTGTCGTCCTATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTAGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGATTTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAAAGAATGAAAATGAAGGTATGGGGGAAAAGACGCAGTATCAATGATGAAATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTTATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCAACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTTCCTTTGGTATGCGGACACTTTTACACCACTCTCCTCCCGGGAGCAGATACTCCAGGACAAGCTGATCCCCGTAAAGAGTTGTAAATCACAAAGTTACAC]

[+] EMBL BX468874             [AGGCAAGAATCGGCACGATGGATGAAGCACATCGCTATGCTGTCGTCCTATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTAGTTGTCCGTGGTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGATTTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAAAGAATGAAAATGAAGGTATGGGGGAAAAGACGCAGTATCAATGATGAAATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTTATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCAACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTTCCTTTGGTATGCGGACACTTTTACACCACTCTCCTCCCGGGAGCAGATACTCCAGGACAAGCTGATCCCCGTAAAGAGTTGTAAATCACAAAGTTACAC]


>consensus_1388#1 AGGCAAGAATCGGCACGATGGATGAAGCACATCGCTATGCTGTCGTCCTATTTTGCCGGT TCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTAGTTGTCCGTGGTATAGGCTGCTG CATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGATTTTAATGTTTACTAC CCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAAAGAATGAAAATGAAGGT ATGGGGGAAAAGACGCAGTATCAATGATGAAATGTGTCGATTTGGGCGACTGTGCGTACG TGCAGTGCAGGGGACAGCAAACAATAATTTATCGATATGATATTCATATTTGTAATTTAT TTTCATCCATAACTGTACTTGATTGTACCAACTAATACTGCAAAGGCGCGTACGTTTGAT CATTGATTCTGCGTTCCTTTGGTATGCGGACACTTTTACACCACTCTCCTCCCGGGAGCA GATACTCCAGGACAAGCTGATCCCCGTAAAGAGTTGTAAATCACAAAGTTACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1388#0      CCAACCTTTGCCGAGCTGAAGCGGCGGCTGTACAACTGTAAGCGTGAAACGGCCAACACG 60
consensus_1388#1      ------------------------------------------------------------
                                                                                  

consensus_1388#0      TACGTGACGTAGAGCGTGTGGCCCGATGCAGCGATCCAGCTGGGATGAAAGAAAAAAACT 120
consensus_1388#1      ------------------------------------------------------------
                                                                                  

consensus_1388#0      TAACGCGCAAAGGACGAAGACAAAGAGTCATCGGTATAACCGAAGAAAGGAAGGAAAAGG 180
consensus_1388#1      ------------------------------------------------------------
                                                                                  

consensus_1388#0      GCATCCGTTAAGATAAGAATGAATCTAATTGTAAAAAAGCAGACAAACAAAAGCTAATAG 240
consensus_1388#1      ----------AGGCAAGAATCGGCACGATGG--ATGAAGCACATCGCTATGCTGTCGTCC 48
                                **  ******       ** *  *  ***** *     *     *  *  

consensus_1388#0      AAGATTTC---TTTCACATCATCTTGAGAGAATTGTGCGCGCGATTGGAAGATGTCACGT 297
consensus_1388#1      TATTTTGCCGGTTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTG-TGTGTAGTTGTC-CGT 106
                       *  ** *   **     ** *  ** *       ** *** * *  * ** **** ***

consensus_1388#0      GTGCATTGTCCATCGTCTGTGCAAACGATGAGTTTTGTGTGTGCCAATCTTGGCTTTGGT 357
consensus_1388#1      G-GTATAGGCTGCTGCATACCAAGGTTCAGAGAGCTGCATCGATATTTATTAGTTGTGAT 165
                      * * ** * *    *  *    *      ***   **  *       * ** * * ** *

consensus_1388#0      GTAGAAGCTGGAAGAATATTTCAGCTTATGCACGGT-TAGTGTTAACACTTTCCTCAGTG 416
consensus_1388#1      TTTAATGTTTACTACCCTCCAAAACTCCTCATCAGAGCGACGGTAACTGTTCTTTTAA-A 224
                       *  * * *             * **  *   * *      * ****  **   * *   

consensus_1388#0      GAATGCATTTTTCTTCCATGGTGTGTGGTACTGCATGAGAATGTAGCGTTCGAAACACAA 476
consensus_1388#1      GAATGAAAATG------AAGGTATGGGGGA------AAAGACGCAGTATC--AATGATGA 270
                      ***** *  *       * *** ** ** *       *  * * **  *   **  *  *

consensus_1388#0      ACGGCGTGTACCTAGCGTACGTGTTGCGGTCCTAACGCAGCTTGGCATGCGCTTTAATCC 536
consensus_1388#1      AATGTGTCGATTTGGGCGACTGTGCGTACGTGCAGTGCAGGGGACAGCAAACAATAATTT 330
                      *  * **  *  * *   **     *       *  ****           *  ****  

consensus_1388#0      TTTAATGGAACAATTGAAATGGTGATGTTTTGAAGCACATCGCTATGCTGTGTCCTATTT 596
consensus_1388#1      ATCGATATGATATTCATATTTGTAATTTATTTTCATCCATAACTGTACTTGATTGTACCA 390
                       *  **   * * *   * * ** ** * **      ***  ** * **   *  **   

consensus_1388#0      TGCCGGNTCTGTGTCGTGCTGTGTCCGCGCTGTGCGTGTGTGTGTTGTCCGTGGTATA-- 654
consensus_1388#1      -ACTAATACTGCAAAGGCGCGTACGTTTGATCATTGATTCTGCGTT-CCTTTGGTATGCG 448
                        *     ***    *    **      * *    *  * ** ***  *  ******   

consensus_1388#0      GGCTGCTGCATACCAAGGGTCAGAGAGCTGCATCGATATTTATTAGTTGNGATTTTAATG 714
consensus_1388#1      GACACTTTTACACCACTCTCCTCCCGGGAGCA--GATACTC-CAGGACAAGCTGATCCCC 505
                      * *   *  * ****     *     *  ***  **** *     *    * *  *    

consensus_1388#0      GTTACTACCCTCCAAACTCCTCATCANAGCGACGGTAACT 754
consensus_1388#1      GTAAAGAGTTGTAAATCACAAAGTTACAC----------- 534
                      ** *  *      ** * *    * * *            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)