cluster # 1397

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Anopheles gambiae
cluster # 1397 cluster # 1397 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1397#0 length = 919 sequences # 1

consensus_1397#1 length = 427 sequences # 1

consensusID : consensus_1397#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 919
fasta sequence

                              [CAGAATCGCGCACGAGGTCGACAACACAACTGCCGCCAGCGTCGACCGAAAGGAAGGCAAGAGCGCTAGCAAGCGAAAAAACCGACCAAAGGACTCGCGCACCCCGAACCGCCCGTCCCTGCCGGCCACGAGCGGGTGCGACAGCAGCAACAATGGCTACGAGGACGACAGCGCATCGCAGGCGAGTGGGCCGGTCACGGCCGGCAGCCATGGTGGTGGTGCGTACGCCGGCTCGGAACTGCTGCCGAATGGGCAGAAGGGCAAGCACCGCTGTCCCATGTGCGACAAGCTGTTTGCGTGGCCCAAGTCGCTCAAGATCCATCTGCGCACGCACACGGGCGAGAAGCCGTACCGGTGCGACGTGTGCGGCAAGTGCTTCGGCCGCTCGGACAGCTTGCGCGGCCACAAGCGGACGCACGCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCTCGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACCCTCGAACGAACGTGGGGGGGCAACGATTGGCGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCCCGTGAATTCACCAGCATCGTTTGTCGGACGGGTCCACCTGGTGCCCTGGGAGTCGCTGTAAAATCGAATCCAATCCACCGGAACACGTGCCTCGTGTTTCGGCTCGCTTCATGTAACCTATAGTGTAAATTCACATATCTTGGAAACTTATGTTCCTTTAACATTTTAATACCCTAATTCCAAAAAAACAATTCTTCCGGTGAAGTGGCAGTAGGCCAATTTAAAACAAACCTTTTTCGGGACNCTTAAAAAAAANAGAGAGACAGCATTTCGGCGAAGTATT]

[+] EMBL BX467343             [CAGAATCGCGCACGAGGTCGACAACACAACTGCCGCCAGCGTCGACCGAAAGGAAGGCAAGAGCGCTAGCAAGCGAAAAAACCGACCAAAGGACTCGCGCACCCCGAACCGCCCGTCCCTGCCGGCCACGAGCGGGTGCGACAGCAGCAACAATGGCTACGAGGACGACAGCGCATCGCAGGCGAGTGGGCCGGTCACGGCCGGCAGCCATGGTGGTGGTGCGTACGCCGGCTCGGAACTGCTGCCGAATGGGCAGAAGGGCAAGCACCGCTGTCCCATGTGCGACAAGCTGTTTGCGTGGCCCAAGTCGCTCAAGATCCATCTGCGCACGCACACGGGCGAGAAGCCGTACCGGTGCGACGTGTGCGGCAAGTGCTTCGGCCGCTCGGACAGCTTGCGCGGCCACAAGCGGACGCACGCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCTCGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACCCTCGAACGAACGTGGGGGGGCAACGATTGGCGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCCCGTGAATTCACCAGCATCGTTTGTCGGACGGGTCCACCTGGTGCCCTGGGAGTCGCTGTAAAATCGAATCCAATCCACCGGAACACGTGCCTCGTGTTTCGGCTCGCTTCATGTAACCTATAGTGTAAATTCACATATCTTGGAAACTTATGTTCCTTTAACATTTTAATACCCTAATTCCAAAAAAACAATTCTTCCGGTGAAGTGGCAGTAGGCCAATTTAAAACAAACCTTTTTCGGGACNCTTAAAAAAAANAGAGAGACAGCATTTCGGCGAAGTATT]




>consensus_1397#0
CAGAATCGCGCACGAGGTCGACAACACAACTGCCGCCAGCGTCGACCGAAAGGAAGGCAA
GAGCGCTAGCAAGCGAAAAAACCGACCAAAGGACTCGCGCACCCCGAACCGCCCGTCCCT
GCCGGCCACGAGCGGGTGCGACAGCAGCAACAATGGCTACGAGGACGACAGCGCATCGCA
GGCGAGTGGGCCGGTCACGGCCGGCAGCCATGGTGGTGGTGCGTACGCCGGCTCGGAACT
GCTGCCGAATGGGCAGAAGGGCAAGCACCGCTGTCCCATGTGCGACAAGCTGTTTGCGTG
GCCCAAGTCGCTCAAGATCCATCTGCGCACGCACACGGGCGAGAAGCCGTACCGGTGCGA
CGTGTGCGGCAAGTGCTTCGGCCGCTCGGACAGCTTGCGCGGCCACAAGCGGACGCACGC
CGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCTCGAACGCGGCCGAGCT
GGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGG
GAGAGACGGCTCGGTCCAGGGAAGACCCTCGAACGAACGTGGGGGGGCAACGATTGGCGT
GGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCCCGTGAATTCACCAGCATCGTTTGT
CGGACGGGTCCACCTGGTGCCCTGGGAGTCGCTGTAAAATCGAATCCAATCCACCGGAAC
ACGTGCCTCGTGTTTCGGCTCGCTTCATGTAACCTATAGTGTAAATTCACATATCTTGGA
AACTTATGTTCCTTTAACATTTTAATACCCTAATTCCAAAAAAACAATTCTTCCGGTGAA
GTGGCAGTAGGCCAATTTAAAACAAACCTTTTTCGGGACNCTTAAAAAAAANAGAGAGAC
AGCATTTCGGCGAAGTATT

consensusID : consensus_1397#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [ACAAGCGGACGCACCCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCCCGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACTCCCGAACGAACGTGGGGAGGCAACGATTGGTGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCGCGTGAATTCACCAGCATCGTTTGTCGGACGGGTCCACCTGGGTGTCCTGGGAGTCGCTGTAAGATCGAATCCAATTCCACCGGAACACGGTTCGGCTCGCTTCATGTACGCTATAGTGTAAATAAATATATAGAAATATGTACTTACATTTTAAATACGTGAATCCCAACAAACACTCTTCCGTGTGTGGCAGTA]

[-] EMBL AGA285673            [ACAAGCGGACGCACCCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCCCGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACTCCCGAACGAACGTGGGGAGGCAACGATTGGTGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCGCGTGAATTCACCAGCATCGTTTGTCGGACGGGTCCACCTGGGTGTCCTGGGAGTCGCTGTAAGATCGAATCCAATTCCACCGGAACACGGTTCGGCTCGCTTCATGTACGCTATAGTGTAAATAAATATATAGAAATATGTACTTACATTTTAAATACGTGAATCCCAACAAACACTCTTCCGTGTGTGGCAGTA]




>consensus_1397#1
ACAAGCGGACGCACCCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCC
CGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGA
GTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACTCCCGAACGAACGTGGGG
AGGCAACGATTGGTGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCGCGTGAATT
CACCAGCATCGTTTGTCGGACGGGTCCACCTGGGTGTCCTGGGAGTCGCTGTAAGATCGA
ATCCAATTCCACCGGAACACGGTTCGGCTCGCTTCATGTACGCTATAGTGTAAATAAATA
TATAGAAATATGTACTTACATTTTAAATACGTGAATCCCAACAAACACTCTTCCGTGTGT
GGCAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1397#0      CAGAATCGCGCACGAGGTCGACAACACAACTGCCGCCAGCGTCGACCGAAAGGAAGGCAA 60
consensus_1397#1      ------------------------------------------------------------
                                                                                  

consensus_1397#0      GAGCGCTAGCAAGCGAAAAAACCGACCAAAGGACTCGCGCACCCCGAACCGCCCGTCCCT 120
consensus_1397#1      ------------------------------------------------------------
                                                                                  

consensus_1397#0      GCCGGCCACGAGCGGGTGCGACAGCAGCAACAATGGCTACGAGGACGACAGCGCATCGCA 180
consensus_1397#1      ------------------------------------------------------------
                                                                                  

consensus_1397#0      GGCGAGTGGGCCGGTCACGGCCGGCAGCCATGGTGGTGGTGCGTACGCCGGCTCGGAACT 240
consensus_1397#1      ------------------------------------------------------------
                                                                                  

consensus_1397#0      GCTGCCGAATGGGCAGAAGGGCAAGCACCGCTGTCCCATGTGCGACAAGCTGTTTGCGTG 300
consensus_1397#1      ------------------------------------------------------------
                                                                                  

consensus_1397#0      GCCCAAGTCGCTCAAGATCCATCTGCGCACGCACACGGGCGAGAAGCCGTACCGGTGCGA 360
consensus_1397#1      ------------------------------------------------------------
                                                                                  

consensus_1397#0      CGTGTGCGGCAAGTGCTTCGGCCGCTCGGACAGCTTGCGCGGCCACAAGCGGACGCACGC 420
consensus_1397#1      --------------------------------------------ACAAGCGGACGCACCC 16
                                                                  ************** *

consensus_1397#0      CGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCTCGAACGCGGCCGAGCT 480
consensus_1397#1      CGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCCCGAACGCGGCCGAGCT 76
                      ******************************************* ****************

consensus_1397#0      GGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGG 540
consensus_1397#1      GGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGG 136
                      ************************************************************

consensus_1397#0      GAGAGACGGCTCGGTCCAGGGAAGACCCTCGAACGAACGTGGGGGGGCAACGATTGGCGT 600
consensus_1397#1      GAGAGACGGCTCGGTCCAGGGAAGACTCCCGAACGAACGTGGGGAGGCAACGATTGGTGT 196
                      ************************** * *************** ************ **

consensus_1397#0      GGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCCCGTGAATTCACCAGCATCGTTTGT 660
consensus_1397#1      GGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCGCGTGAATTCACCAGCATCGTTTGT 256
                      *********************************** ************************

consensus_1397#0      CGGACGGGTCCACCTGG-TGCCCTGGGAGTCGCTGTAAAATCGAATCCAAT-CCACCGGA 718
consensus_1397#1      CGGACGGGTCCACCTGGGTGTCCTGGGAGTCGCTGTAAGATCGAATCCAATTCCACCGGA 316
                      ***************** ** ***************** ************ ********

consensus_1397#0      ACACGTGCCTCGTGTTTCGGCTCGCTTCATGTAACCTATAGTGTAAATTCACATATCTTG 778
consensus_1397#1      ACAC---------GGTTCGGCTCGCTTCATGTACGCTATAGTGTAAATAAATATAT---A 364
                      ****         * ******************  *************  * ****    

consensus_1397#0      GAAACTTATGTTCCTTTAACATTTTAATACCCTAATTCCAAAAAAACAATTCTTCCGGTG 838
consensus_1397#1      GAAA--TATGTACTT---ACATTTTAAATACGTGAATCCCAACAAACACTCTTCCGTGTG 419
                      ****  ***** * *   *********   * * * *** ** ***** *  * *  ***

consensus_1397#0      AAGTGGCAGTAGGCCAATTTAAAACAAACCTTTTTCGGGACNCTTAAAAAAAANAGAGAG 898
consensus_1397#1      ---TGGCAGTA------------------------------------------------- 427
                         ********                                                 

consensus_1397#0      ACAGCATTTCGGCGAAGTATT 919
consensus_1397#1      ---------------------