These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 919 fasta sequence [CAGAATCGCGCACGAGGTCGACAACACAACTGCCGCCAGCGTCGACCGAAAGGAAGGCAAGAGCGCTAGCAAGCGAAAAAACCGACCAAAGGACTCGCGCACCCCGAACCGCCCGTCCCTGCCGGCCACGAGCGGGTGCGACAGCAGCAACAATGGCTACGAGGACGACAGCGCATCGCAGGCGAGTGGGCCGGTCACGGCCGGCAGCCATGGTGGTGGTGCGTACGCCGGCTCGGAACTGCTGCCGAATGGGCAGAAGGGCAAGCACCGCTGTCCCATGTGCGACAAGCTGTTTGCGTGGCCCAAGTCGCTCAAGATCCATCTGCGCACGCACACGGGCGAGAAGCCGTACCGGTGCGACGTGTGCGGCAAGTGCTTCGGCCGCTCGGACAGCTTGCGCGGCCACAAGCGGACGCACGCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCTCGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACCCTCGAACGAACGTGGGGGGGCAACGATTGGCGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCCCGTGAATTCACCAGCATCGTTTGTCGGACGGGTCCACCTGGTGCCCTGGGAGTCGCTGTAAAATCGAATCCAATCCACCGGAACACGTGCCTCGTGTTTCGGCTCGCTTCATGTAACCTATAGTGTAAATTCACATATCTTGGAAACTTATGTTCCTTTAACATTTTAATACCCTAATTCCAAAAAAACAATTCTTCCGGTGAAGTGGCAGTAGGCCAATTTAAAACAAACCTTTTTCGGGACNCTTAAAAAAAANAGAGAGACAGCATTTCGGCGAAGTATT] [+] EMBL BX467343 [CAGAATCGCGCACGAGGTCGACAACACAACTGCCGCCAGCGTCGACCGAAAGGAAGGCAAGAGCGCTAGCAAGCGAAAAAACCGACCAAAGGACTCGCGCACCCCGAACCGCCCGTCCCTGCCGGCCACGAGCGGGTGCGACAGCAGCAACAATGGCTACGAGGACGACAGCGCATCGCAGGCGAGTGGGCCGGTCACGGCCGGCAGCCATGGTGGTGGTGCGTACGCCGGCTCGGAACTGCTGCCGAATGGGCAGAAGGGCAAGCACCGCTGTCCCATGTGCGACAAGCTGTTTGCGTGGCCCAAGTCGCTCAAGATCCATCTGCGCACGCACACGGGCGAGAAGCCGTACCGGTGCGACGTGTGCGGCAAGTGCTTCGGCCGCTCGGACAGCTTGCGCGGCCACAAGCGGACGCACGCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCTCGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACCCTCGAACGAACGTGGGGGGGCAACGATTGGCGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCCCGTGAATTCACCAGCATCGTTTGTCGGACGGGTCCACCTGGTGCCCTGGGAGTCGCTGTAAAATCGAATCCAATCCACCGGAACACGTGCCTCGTGTTTCGGCTCGCTTCATGTAACCTATAGTGTAAATTCACATATCTTGGAAACTTATGTTCCTTTAACATTTTAATACCCTAATTCCAAAAAAACAATTCTTCCGGTGAAGTGGCAGTAGGCCAATTTAAAACAAACCTTTTTCGGGACNCTTAAAAAAAANAGAGAGACAGCATTTCGGCGAAGTATT] consensusID : consensus_1397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [ACAAGCGGACGCACCCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCCCGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACTCCCGAACGAACGTGGGGAGGCAACGATTGGTGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCGCGTGAATTCACCAGCATCGTTTGTCGGACGGGTCCACCTGGGTGTCCTGGGAGTCGCTGTAAGATCGAATCCAATTCCACCGGAACACGGTTCGGCTCGCTTCATGTACGCTATAGTGTAAATAAATATATAGAAATATGTACTTACATTTTAAATACGTGAATCCCAACAAACACTCTTCCGTGTGTGGCAGTA] [-] EMBL AGA285673 [ACAAGCGGACGCACCCCGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCCCGAACGCGGCCGAGCTGGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGGGAGAGACGGCTCGGTCCAGGGAAGACTCCCGAACGAACGTGGGGAGGCAACGATTGGTGTGGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCGCGTGAATTCACCAGCATCGTTTGTCGGACGGGTCCACCTGGGTGTCCTGGGAGTCGCTGTAAGATCGAATCCAATTCCACCGGAACACGGTTCGGCTCGCTTCATGTACGCTATAGTGTAAATAAATATATAGAAATATGTACTTACATTTTAAATACGTGAATCCCAACAAACACTCTTCCGTGTGTGGCAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1397#0 CAGAATCGCGCACGAGGTCGACAACACAACTGCCGCCAGCGTCGACCGAAAGGAAGGCAA 60 consensus_1397#1 ------------------------------------------------------------ consensus_1397#0 GAGCGCTAGCAAGCGAAAAAACCGACCAAAGGACTCGCGCACCCCGAACCGCCCGTCCCT 120 consensus_1397#1 ------------------------------------------------------------ consensus_1397#0 GCCGGCCACGAGCGGGTGCGACAGCAGCAACAATGGCTACGAGGACGACAGCGCATCGCA 180 consensus_1397#1 ------------------------------------------------------------ consensus_1397#0 GGCGAGTGGGCCGGTCACGGCCGGCAGCCATGGTGGTGGTGCGTACGCCGGCTCGGAACT 240 consensus_1397#1 ------------------------------------------------------------ consensus_1397#0 GCTGCCGAATGGGCAGAAGGGCAAGCACCGCTGTCCCATGTGCGACAAGCTGTTTGCGTG 300 consensus_1397#1 ------------------------------------------------------------ consensus_1397#0 GCCCAAGTCGCTCAAGATCCATCTGCGCACGCACACGGGCGAGAAGCCGTACCGGTGCGA 360 consensus_1397#1 ------------------------------------------------------------ consensus_1397#0 CGTGTGCGGCAAGTGCTTCGGCCGCTCGGACAGCTTGCGCGGCCACAAGCGGACGCACGC 420 consensus_1397#1 --------------------------------------------ACAAGCGGACGCACCC 16 ************** * consensus_1397#0 CGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCTCGAACGCGGCCGAGCT 480 consensus_1397#1 CGACGACAAGCTAATACAGTGCCATCTGTGCGATGTGAGCTGCCCGAACGCGGCCGAGCT 76 ******************************************* **************** consensus_1397#0 GGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGG 540 consensus_1397#1 GGTGCAGCATCAGTACACGGTGCACGGTTTGCAGCCGCTGGAGAGTTAGGGCGGACAAGG 136 ************************************************************ consensus_1397#0 GAGAGACGGCTCGGTCCAGGGAAGACCCTCGAACGAACGTGGGGGGGCAACGATTGGCGT 600 consensus_1397#1 GAGAGACGGCTCGGTCCAGGGAAGACTCCCGAACGAACGTGGGGAGGCAACGATTGGTGT 196 ************************** * *************** ************ ** consensus_1397#0 GGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCCCGTGAATTCACCAGCATCGTTTGT 660 consensus_1397#1 GGTTCCTTAGCTTGAAGGAATGCGAGGTGCAATGCGCGTGAATTCACCAGCATCGTTTGT 256 *********************************** ************************ consensus_1397#0 CGGACGGGTCCACCTGG-TGCCCTGGGAGTCGCTGTAAAATCGAATCCAAT-CCACCGGA 718 consensus_1397#1 CGGACGGGTCCACCTGGGTGTCCTGGGAGTCGCTGTAAGATCGAATCCAATTCCACCGGA 316 ***************** ** ***************** ************ ******** consensus_1397#0 ACACGTGCCTCGTGTTTCGGCTCGCTTCATGTAACCTATAGTGTAAATTCACATATCTTG 778 consensus_1397#1 ACAC---------GGTTCGGCTCGCTTCATGTACGCTATAGTGTAAATAAATATAT---A 364 **** * ****************** ************* * **** consensus_1397#0 GAAACTTATGTTCCTTTAACATTTTAATACCCTAATTCCAAAAAAACAATTCTTCCGGTG 838 consensus_1397#1 GAAA--TATGTACTT---ACATTTTAAATACGTGAATCCCAACAAACACTCTTCCGTGTG 419 **** ***** * * ********* * * * *** ** ***** * * * *** consensus_1397#0 AAGTGGCAGTAGGCCAATTTAAAACAAACCTTTTTCGGGACNCTTAAAAAAAANAGAGAG 898 consensus_1397#1 ---TGGCAGTA------------------------------------------------- 427 ******** consensus_1397#0 ACAGCATTTCGGCGAAGTATT 919 consensus_1397#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||