cluster # 1401

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Anopheles gambiae
cluster # 1401 cluster # 1401 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1401#0 length = 518 sequences # 1

consensus_1401#1 length = 145 sequences # 1

consensusID : consensus_1401#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence

                              [AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGTACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGTTGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCGCAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCGCTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGACCAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC]

[+] EMBL BM648219             [AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGTACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGTTGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCGCAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCGCTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGACCAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC]




>consensus_1401#0
AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGT
ACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGT
TGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCG
CAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCG
CTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTA
GCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGG
AGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAA
ACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGAC
CAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC

consensusID : consensus_1401#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [CCGCCCACGCGTCCGATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACG]

[+] EMBL BM653747             [CCGCCCACGCGTCCGATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACG]




>consensus_1401#1
CCGCCCACGCGTCCGATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTG
CTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATAT
TTGGACCTGCAGCGCGAAACAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1401#0      AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGT 60
consensus_1401#1      ------------------------------------------------------------
                                                                                  

consensus_1401#0      ACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGT 120
consensus_1401#1      ------------------------------------------------------------
                                                                                  

consensus_1401#0      TGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCG 180
consensus_1401#1      ------------------------------------------------------------
                                                                                  

consensus_1401#0      CAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCG 240
consensus_1401#1      ------------------------------------------------------------
                                                                                  

consensus_1401#0      CTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTA 300
consensus_1401#1      --------------------------------------CCGCCCACGCGTCCGATTGTTA 22
                                                             **     * *    *******

consensus_1401#0      GCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGG 360
consensus_1401#1      GCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGG 82
                      ************************************************************

consensus_1401#0      AGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAA 420
consensus_1401#1      AGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAA 142
                      ************************************************************

consensus_1401#0      ACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGAC 480
consensus_1401#1      ACG--------------------------------------------------------- 145
                      ***                                                         

consensus_1401#0      CAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC 518
consensus_1401#1      --------------------------------------