These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGTACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGTTGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCGCAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCGCTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGACCAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC] [+] EMBL BM648219 [AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGTACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGTTGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCGCAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCGCTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGACCAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC] consensusID : consensus_1401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 145 fasta sequence [CCGCCCACGCGTCCGATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACG] [+] EMBL BM653747 [CCGCCCACGCGTCCGATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1401#0 AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGT 60 consensus_1401#1 ------------------------------------------------------------ consensus_1401#0 ACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGT 120 consensus_1401#1 ------------------------------------------------------------ consensus_1401#0 TGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCG 180 consensus_1401#1 ------------------------------------------------------------ consensus_1401#0 CAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCG 240 consensus_1401#1 ------------------------------------------------------------ consensus_1401#0 CTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTA 300 consensus_1401#1 --------------------------------------CCGCCCACGCGTCCGATTGTTA 22 ** * * ******* consensus_1401#0 GCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGG 360 consensus_1401#1 GCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGG 82 ************************************************************ consensus_1401#0 AGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAA 420 consensus_1401#1 AGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAA 142 ************************************************************ consensus_1401#0 ACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGAC 480 consensus_1401#1 ACG--------------------------------------------------------- 145 *** consensus_1401#0 CAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC 518 consensus_1401#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||