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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1401 cluster # 1401       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1401#0 length = 518 sequences # 1  
consensus_1401#1 length = 145 sequences # 1  

consensusID : consensus_1401#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence
                              [AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGTACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGTTGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCGCAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCGCTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGACCAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC]

[+] EMBL BM648219             [AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGTACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGTTGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCGCAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCGCTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGACCAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC]


>consensus_1401#0 AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGT ACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGT TGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCG CAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCG CTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTA GCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGG AGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAA ACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGAC CAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC



consensusID : consensus_1401#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence
                              [CCGCCCACGCGTCCGATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACG]

[+] EMBL BM653747             [CCGCCCACGCGTCCGATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAAACG]


>consensus_1401#1 CCGCCCACGCGTCCGATTGTTAGCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTG CTGCTAGCGTTAGGTGCGCTGGAGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATAT TTGGACCTGCAGCGCGAAACAAACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1401#0      AGGTAGCGCGAACGTTGAAGCGCTTCGAGGCAAGCTCACGCTCACCGATCATTCTGCAGT 60
consensus_1401#1      ------------------------------------------------------------
                                                                                  

consensus_1401#0      ACAATGAAACGATCCAGGGCATTGACACGATCAAAGCGTACGAGGCGGAGGATCGCTTGT 120
consensus_1401#1      ------------------------------------------------------------
                                                                                  

consensus_1401#0      TGCGCCAGTTCTTTGAGAGGGTGGACACGCACCAGAACTACATTTACCACAACCGGTTCG 180
consensus_1401#1      ------------------------------------------------------------
                                                                                  

consensus_1401#0      CAAACAGGTGGATCGGTATACGGTTGGAGTTTATCGGAGCGATTGTGATTTACTACGTCG 240
consensus_1401#1      ------------------------------------------------------------
                                                                                  

consensus_1401#0      CTCTGCTCACCGTCAGCAATCAATCGATGGTTGGGTTTGCGTTTGTGGGCATCATTGTTA 300
consensus_1401#1      --------------------------------------CCGCCCACGCGTCCGATTGTTA 22
                                                             **     * *    *******

consensus_1401#0      GCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGG 360
consensus_1401#1      GCTATGTGTTGCGGTTGATTCCTTCGCTGAACTCACTGCTGCTAGCGTTAGGTGCGCTGG 82
                      ************************************************************

consensus_1401#0      AGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAA 420
consensus_1401#1      AGGAAAACATAATCTCGTTCGAGCGAGTCGCACAATATTTGGACCTGCAGCGCGAAACAA 142
                      ************************************************************

consensus_1401#0      ACGATGACACGGGTGTAGATTATCCAACGAGCGGAATGGACAAGCACCCCGTCCTCGGAC 480
consensus_1401#1      ACG--------------------------------------------------------- 145
                      ***                                                         

consensus_1401#0      CAATCATCTACCGGGACTTTTCGCTAACGCACGCTGAC 518
consensus_1401#1      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)