cluster # 1409

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Anopheles gambiae
cluster # 1409 cluster # 1409 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1409#0 length = 644 sequences # 1

consensus_1409#1 length = 581 sequences # 1

consensusID : consensus_1409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACAAGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAGTGTGCAAGTGTGTGTGTTAAAGAGTGTAAATGCGAAAAAGAAGAAGAATAAACATAAAACAACAAACAAGAACAAAACTAAAACTTAGAAGAAAAAATAAGAAGCAAGAAATAAACACACACACAGACACATACCAAACAAGATGGTAGAGCACCGTTTGCTGCACGTACGGTGAAGAAGAAGAAAAAAGCGGTACGAATAGCTAAAATAAATAAAAGAAAATGAAAAGGTAACTAAATTTAAAGCAAACAGCAATTGTAGGAAACATTAACAATTAACAACACGGAATAATTGCATCAAACACTCTCACACACATACACACTCGCAAACACATACATTCTGAAAACACGTGGAAAAGAAAATGAAATGAAATAACATACTTAAAGAAATAACAAAACAAAATGAAACAAACAAGCAAACAACAAAGAACAACAAAGGAGATGCAAACAAAAAAGATGCAAAATAGTGGAAAATCACATAGTGGTACACGGAAAAGAGGGGGTAAGGAAGGTCATTGCGGATGGGTAACGGGGGAAG]

[+] EMBL BM575758             [CCGGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACAAGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAGTGTGCAAGTGTGTGTGTTAAAGAGTGTAAATGCGAAAAAGAAGAAGAATAAACATAAAACAACAAACAAGAACAAAACTAAAACTTAGAAGAAAAAATAAGAAGCAAGAAATAAACACACACACAGACACATACCAAACAAGATGGTAGAGCACCGTTTGCTGCACGTACGGTGAAGAAGAAGAAAAAAGCGGTACGAATAGCTAAAATAAATAAAAGAAAATGAAAAGGTAACTAAATTTAAAGCAAACAGCAATTGTAGGAAACATTAACAATTAACAACACGGAATAATTGCATCAAACACTCTCACACACATACACACTCGCAAACACATACATTCTGAAAACACGTGGAAAAGAAAATGAAATGAAATAACATACTTAAAGAAATAACAAAACAAAATGAAACAAACAAGCAAACAACAAAGAACAACAAAGGAGATGCAAACAAAAAAGATGCAAAATAGTGGAAAATCACATAGTGGTACACGGAAAAGAGGGGGTAAGGAAGGTCATTGCGGATGGGTAACGGGGGAAG]




>consensus_1409#0
CCGGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACAAGAAAATATTGTA
AGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAGTGTGCAAGTGTGT
GTGTTAAAGAGTGTAAATGCGAAAAAGAAGAAGAATAAACATAAAACAACAAACAAGAAC
AAAACTAAAACTTAGAAGAAAAAATAAGAAGCAAGAAATAAACACACACACAGACACATA
CCAAACAAGATGGTAGAGCACCGTTTGCTGCACGTACGGTGAAGAAGAAGAAAAAAGCGG
TACGAATAGCTAAAATAAATAAAAGAAAATGAAAAGGTAACTAAATTTAAAGCAAACAGC
AATTGTAGGAAACATTAACAATTAACAACACGGAATAATTGCATCAAACACTCTCACACA
CATACACACTCGCAAACACATACATTCTGAAAACACGTGGAAAAGAAAATGAAATGAAAT
AACATACTTAAAGAAATAACAAAACAAAATGAAACAAACAAGCAAACAACAAAGAACAAC
AAAGGAGATGCAAACAAAAAAGATGCAAAATAGTGGAAAATCACATAGTGGTACACGGAA
AAGAGGGGGTAAGGAAGGTCATTGCGGATGGGTAACGGGGGAAG

consensusID : consensus_1409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [GTTTCCTTCTTAAGAAACCTTCGTCACAACTGCTGCTCTCTACAGCGCATAAGCACACACCAAAAACAAACAAAACAAAGTAAAAGAAGAAGAAGAAAAAAAACCATTAGGCATTAAAACGTAAAAGTTATACAACAGCAAGCAACCGAAAACTGAAAACAAAAGAAAAAAAAAAGAACAACAACATGAAGCAAACCATCATCCGTAGTGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACAAGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAGTGTGCAAGTGTGTGTGTTAAAGAGTGAAAAAAAACCATTAGGCATTAAAACGTAAAAGTTATACAACAGCAAGCAACCGAAAACTGAAAACAAAAGAAAAAAAAAAGAACAACAACATGAAGCAAACCATCATCCGTAGTGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACAAGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAGTGTGCAAGTGTGTGTGTTAAAGAG]

[+] EMBL BX611197             [GTTTCCTTCTTAAGAAACCTTCGTCACAACTGCTGCTCTCTACAGCGCATAAGCACACACCAAAAACAAACAAAACAAAGTAAAAGAAGAAGAAGAAAAAAAACCATTAGGCATTAAAACGTAAAAGTTATACAACAGCAAGCAACCGAAAACTGAAAACAAAAGAAAAAAAAAAGAACAACAACATGAAGCAAACCATCATCCGTAGTGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACAAGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAGTGTGCAAGTGTGTGTGTTAAAGAGTGAAAAAAAACCATTAGGCATTAAAACGTAAAAGTTATACAACAGCAAGCAACCGAAAACTGAAAACAAAAGAAAAAAAAAAGAACAACAACATGAAGCAAACCATCATCCGTAGTGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACAAGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAGTGTGCAAGTGTGTGTGTTAAAGAG]




>consensus_1409#1
GTTTCCTTCTTAAGAAACCTTCGTCACAACTGCTGCTCTCTACAGCGCATAAGCACACAC
CAAAAACAAACAAAACAAAGTAAAAGAAGAAGAAGAAAAAAAACCATTAGGCATTAAAAC
GTAAAAGTTATACAACAGCAAGCAACCGAAAACTGAAAACAAAAGAAAAAAAAAAGAACA
ACAACATGAAGCAAACCATCATCCGTAGTGTGCGAACGATTTACAGTGTGTAAGGAATGC
AAATAAACAAACAAGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGC
AAATTATGCGAAGTGTGCAAGTGTGTGTGTTAAAGAGTGAAAAAAAACCATTAGGCATTA
AAACGTAAAAGTTATACAACAGCAAGCAACCGAAAACTGAAAACAAAAGAAAAAAAAAAG
AACAACAACATGAAGCAAACCATCATCCGTAGTGTGCGAACGATTTACAGTGTGTAAGGA
ATGCAAATAAACAAACAAGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTAT
GAGCAAATTATGCGAAGTGTGCAAGTGTGTGTGTTAAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1409#0      CCGGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACAA--GAAAATATTG 58
consensus_1409#1      ----------------------------GTTTCCTTCTTAAGAAACCTTCGTCACAACTG 32
                                                  *  * *   * ** ****    *  *  * **

consensus_1409#0      TAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAGTGTGCAAGTGT 118
consensus_1409#1      CTGCTCTCTACAGCGCATAAGCACACAC-CAAAAACAAACAAAACAAAGTAAAAGAAGAA 91
                           *   *       * **         *  * ****  *  * ****     *    

consensus_1409#0      GTGTGTTAAAGAGTGTAAATGCGAAAAAGAAGAAGAATAAACATAAAACAACAAACAAGA 178
consensus_1409#1      GAAGAAAAAAAACCATTAG-GCATTAAAACGTAAAAGT---TATACAACAGCAAGCAACC 147
                      *      *** *   * *  **   ***    ** * *    *** **** *** ***  

consensus_1409#0      ACAAAACTAAAACTTAGAAGAAAAAATAAGAAGCAAGAAATAAACACACACACAGACACA 238
consensus_1409#1      GAAAACTGAAAAC--AAAAGAAAAAAAAAAGAACAACAACATGAAGCAAACCATCATCCG 205
                        ***   *****  * ********* **  * *** **    *  ** **    *  * 

consensus_1409#0      TACCAAACAAGATGGTAGAGCACCGTTTGCTGCACGTACGGTGAAGAAGAAGAAAAAAGC 298
consensus_1409#1      TAGTGTGCGA-ACGATTTA-CAGTGTGTAAGGAATGCA-AATAAACAA--ACAAGAAAAT 260
                      **     * * * * *  * **  ** *   * * * *   * ** **  * ** ***  

consensus_1409#0      GGTACGAATAGCTAAAATAAATAAAAGAAAATGAAAAGGTAACTAAATTTAAAGCAAACA 358
consensus_1409#1      ATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTA-TGCGAAGTGTGCA 319
                        *   *   *  ** * *  * *  *    ** *   * ** * * *   ***    **

consensus_1409#0      GCAAT-TGTAGGAAACATTAACAATTAACAACACGGAATAATTGCATCAAACACTCTCAC 417
consensus_1409#1      AGTGTGTGTGTTAAAGAGTGAAAAAAAACCATTAGGCATTAAAACGTAAAAG--TTATAC 377
                          * ***   *** * * * **  *** *   ** ** *   * * ***   *   **

consensus_1409#0      ACACATACACACTCGCAAAC-ACATACATTCTGAAAACACGTGGAAAAGAAAATGAAATG 476
consensus_1409#1      AACAGCAAGCAACCGAAAACTGAAAACAAAAGAAAAAAAAAAGAACAACAACATGAAGCA 437
                      *     *  **  ** ****   * ***     **** *   * * ** ** *****   

consensus_1409#0      AAATAACATACTTAAAGAAATAACAAAACAAAATGAAACAAACAAGCAAACAA-CAAAGA 535
consensus_1409#1      AACCATCATCCGTAGTGTGCGAACGATTTACAGTGTGTAAGGAATGCAAATAAACAAACA 497
                      **  * *** * **  *    *** *   * * **    *   * ***** ** **** *

consensus_1409#0      ACAACAAAGGAGATGCAAACAAAAAAGATGCAAAATAGTGGAAAATCACATAGTGGTACA 595
consensus_1409#1      AGAAAATATTGTAAGCCGAAAACAAATTTGAGTGTGTGTGTATGAGCAAATTATGCGAAG 557
                      * ** * *    * **  * ** ***  **       *** *  * ** **  **  *  

consensus_1409#0      CGGAAAAGAGGGGGTAAGGAAGGTCATTGCGGATGGGTAACGGGGGAAG 644
consensus_1409#1      TGTGCAAGTGTGTGTGTTAAAGAG------------------------- 581
                       *   *** * * **    ***