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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[CCGAACGGCACTCGCGAACAAGTGTTTGGGGGTCAGTGTCAGCGCACACAGAAAAAGGGAACTCTCCCGCCTCTCTCTCCCGCCTCTCTCTTCTCACCTTCTCACCCATCCCATTTCCCTGTGCAGAGTGTGGAGGGATTCAAAAACTTTTTGTAACCTCCACCAAACCTGATTCCGTTCCCTTTCCATTTGCCGGCTGTGTATGTGTGTACGCCTGCCAAGGGTGTGAGAAGAATGCTTTCGATTTTTGTACTCCCTGTGTGTGTGTGTGTATGTTTATGTTTCGTGCTTCTAGAAGTTGTTCCCACAACCTCCATCACAACCCTCCAGTTACCCGCCCTGCGTACCAAGCCGTATGAATTATTCACAACCGTCCGAGCGGCACAGATGGATAATAAAATAAGCTAACCTACGGAGAGCTAAGTTTTGAAGCAAACACAGTCAAACTAACGGACTGCGGGTTGGGTGGAGTGCAACTTTTTCCTTGATTTTTAAGTGAGACACTCCTCCCCTCTCCTGCCCCTTCTTTGCGCGCCACAGAAACGTTTCTGCTTTTGTGCGAGCGAAACCTGATTAGAGCGCTTTCTGCTTTTCCCCCACACTCCGGTCAATTAGGCTGTGCGAGGCTTTTGCATTGCAGAAAAGCAGCTCCGTGTT]
[+] EMBL BM649081 [CCGAACGGCACTCGCGAACAAGTGTTTGGGGGTCAGTGTCAGCGCACACAGAAAAAGGGAACTCTCCCGCCTCTCTCTCCCGCCTCTCTCTTCTCACCTTCTCACCCATCCCATTTCCCTGTGCAGAGTGTGGAGGGATTCAAAAACTTTTTGTAACCTCCACCAAACCTGATTCCGTTCCCTTTCCATTTGCCGGCTGTGTATGTGTGTACGCCTGCCAAGGGTGTGAGAAGAATGCTTTCGATTTTTGTACTCCCTGTGTGTGTGTGTGTATGTTTATGTTTCGTGCTTCTAGAAGTTGTTCCCACAACCTCCATCACAACCCTCCAGTTACCCGCCCTGCGTACCAAGCCGTATGAATTATTCACAACCGTCCGAGCGGCACAGATGGATAATAAAATAAGCTAACCTACGGAGAGCTAAGTTTTGAAGCAAACACAGTCAAACTAACGGACTGCGGGTTGGGTGGAGTGCAACTTTTTCCTTGATTTTTAAGTGAGACACTCCTCCCCTCTCCTGCCCCTTCTTTGCGCGCCACAGAAACGTTTCTGCTTTTGTGCGAGCGAAACCTGATTAGAGCGCTTTCTGCTTTTCCCCCACACTCCGGTCAATTAGGCTGTGCGAGGCTTTTGCATTGCAGAAAAGCAGCTCCGTGTT]
consensusID : consensus_1411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[GACCCACGCGTCCGGAAAGGACAACTAAAACACTAACTAAAAGTTTTTTGTTTGCCAAACAGCTCCGCTCACCGCTATTCATTTGCTGTTCATACGTGTGTGAAAGTGGTGTTTTTTTTTTAATTGTACACTACCGTACCATTTGAGCAAGTAGCACACACACACACACACACAATAGGGCACATTTCCCGACTAAAGCGCTGCGAGATGCCCCGATTCGTGCTTGTGTGTGTGTGTGTGTGTGTGAAAAGCGACACCAAAAGCAGGGAAACGGCACTCGCGAACAAGTGTTTTGGGGGTCAGTGTCAGCGCACACAGAAAAAGGCACACTCTCCCGCCTCTCTCTTCTCACCTTCTCACCCATCCCATTTCCCTGTTCAGAGTGTGGAGGGATTCAAAAACTTTTTGTAACCTCCACCAAACCTGATTCCGTTCCCTTTCCATTTGCCGGCTGTGTATGTGTGTACGCCTTCCAAGGGTGTGAGAAGAATGCTTTCGATTTTTGTACTCCCTGTGTGTGTGTGTATGTTTATGTTTCGTGCTTCCTAGAAGTTGTTCCCACAAACCTC]
[+] EMBL BM648271 [GACCCACGCGTCCGGAAAGGACAACTAAAACACTAACTAAAAGTTTTTTGTTTGCCAAACAGCTCCGCTCACCGCTATTCATTTGCTGTTCATACGTGTGTGAAAGTGGTGTTTTTTTTTTAATTGTACACTACCGTACCATTTGAGCAAGTAGCACACACACACACACACACAATAGGGCACATTTCCCGACTAAAGCGCTGCGAGATGCCCCGATTCGTGCTTGTGTGTGTGTGTGTGTGTGTGAAAAGCGACACCAAAAGCAGGGAAACGGCACTCGCGAACAAGTGTTTTGGGGGTCAGTGTCAGCGCACACAGAAAAAGGCACACTCTCCCGCCTCTCTCTTCTCACCTTCTCACCCATCCCATTTCCCTGTTCAGAGTGTGGAGGGATTCAAAAACTTTTTGTAACCTCCACCAAACCTGATTCCGTTCCCTTTCCATTTGCCGGCTGTGTATGTGTGTACGCCTTCCAAGGGTGTGAGAAGAATGCTTTCGATTTTTGTACTCCCTGTGTGTGTGTGTATGTTTATGTTTCGTGCTTCCTAGAAGTTGTTCCCACAAACCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1411#0 ------------------------------------------------------------
consensus_1411#1 GACCCACGCGTCCGGAAAGGACAACTAAAACACTAACTAAAAGTTTTTTGTTTGCCAAAC 60
consensus_1411#0 ------------------------------------------------------------
consensus_1411#1 AGCTCCGCTCACCGCTATTCATTTGCTGTTCATACGTGTGTGAAAGTGGTGTTTTTTTTT 120
consensus_1411#0 ------------------------------------------------------------
consensus_1411#1 TAATTGTACACTACCGTACCATTTGAGCAAGTAGCACACACACACACACACACAATAGGG 180
consensus_1411#0 ------------------------------------------------------------
consensus_1411#1 CACATTTCCCGACTAAAGCGCTGCGAGATGCCCCGATTCGTGCTTGTGTGTGTGTGTGTG 240
consensus_1411#0 --------------------------CCGAACGGCACTCGCGAACAAGTGTTT-GGGGGT 33
consensus_1411#1 TGTGTGAAAAGCGACACCAAAAGCAGGGAAACGGCACTCGCGAACAAGTGTTTTGGGGGT 300
************************ ******
consensus_1411#0 CAGTGTCAGCGCACACAGAAAAAGGGAACTCTCCCGCCTCTCTCTCCCGCCTCTCTCTTC 93
consensus_1411#1 CAGTGTCAGCGCACACAGAAAAAGGCA------------CACTCTCCCGCCTCTCTCTTC 348
************************* * * *******************
consensus_1411#0 TCACCTTCTCACCCATCCCATTTCCCTGTGCAGAGTGTGGAGGGATTCAAAAACTTTTTG 153
consensus_1411#1 TCACCTTCTCACCCATCCCATTTCCCTGTTCAGAGTGTGGAGGGATTCAAAAACTTTTTG 408
***************************** ******************************
consensus_1411#0 TAACCTCCACCAAACCTGATTCCGTTCCCTTTCCATTTGCCGGCTGTGTATGTGTGTACG 213
consensus_1411#1 TAACCTCCACCAAACCTGATTCCGTTCCCTTTCCATTTGCCGGCTGTGTATGTGTGTACG 468
************************************************************
consensus_1411#0 CCTGCCAAGGGTGTGAGAAGAATGCTTTCGATTTTTGTACTCCCTGTGTGTGTGTGTGTA 273
consensus_1411#1 CCTTCCAAGGGTGTGAGAAGAATGCTTTCGATTTTTGTACTCCCTGTGTGTGTGTG--TA 526
*** **************************************************** **
consensus_1411#0 TGTTTATGTTTCGTGCTTC-TAGAAGTTGTTCCCACAACCTCCATCACAACCCTCCAGTT 332
consensus_1411#1 TGTTTATGTTTCGTGCTTCCTAGAAGTTGTTCCCACAAACCTC----------------- 569
******************* ****************** * *
consensus_1411#0 ACCCGCCCTGCGTACCAAGCCGTATGAATTATTCACAACCGTCCGAGCGGCACAGATGGA 392
consensus_1411#1 ------------------------------------------------------------
consensus_1411#0 TAATAAAATAAGCTAACCTACGGAGAGCTAAGTTTTGAAGCAAACACAGTCAAACTAACG 452
consensus_1411#1 ------------------------------------------------------------
consensus_1411#0 GACTGCGGGTTGGGTGGAGTGCAACTTTTTCCTTGATTTTTAAGTGAGACACTCCTCCCC 512
consensus_1411#1 ------------------------------------------------------------
consensus_1411#0 TCTCCTGCCCCTTCTTTGCGCGCCACAGAAACGTTTCTGCTTTTGTGCGAGCGAAACCTG 572
consensus_1411#1 ------------------------------------------------------------
consensus_1411#0 ATTAGAGCGCTTTCTGCTTTTCCCCCACACTCCGGTCAATTAGGCTGTGCGAGGCTTTTG 632
consensus_1411#1 ------------------------------------------------------------
consensus_1411#0 CATTGCAGAAAAGCAGCTCCGTGTT 657
consensus_1411#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||