These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 698 fasta sequence [CCGAGCTGGCATTCCGGCTAGCAAAGGGGGCCGCTCATCGGTAAATAGCTGGAATTAAGTTTTCGCAGTGTTTTTGGGTGCTCGAAATTATGTCCGCGCTTAAAAGTAACGCGGTCGTCGTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGACGAGACGTACAATTACTGGTAGCCGTTGCACTATCTGCTTAAGGGCAAAGGTTTTCAAACATGGGAATACAGTCCCGAATTTGCCTTGCGGTCCTACAGCTACCTATGGCTACACGGACTGCCGGCGAAAGTGTTGCAGCTGGTGACGGATAATGGTGTTCTTATTTTCTACTTCGTCCGGTGTCTACTGGCTGTAACTTGTGCCTTGCTCGAGTATCGCCTGTACAGGATTTTGGGACGGAAATGTGGCGGCGGTGTGGCTAGTCTGTGGCTGCTATTCCAGCTTACCAGTGCCGGAATGTTTATCTCTAGCGCTGCGCTGTTGCCCAGCAGTTTTTCCATGTACATTACCCTAGCAACGATGGCTGCGTGGCTGAATGAAGATACGCAAACGGCTATTGCGGTAACAGCATTTTCCGGACTGATTGGTTGGCCTTTCGCTGTTATAGTGGCCGTTCCCTTCGTTCTCGAGCTGCTTTTTAGAAAAAGAAAGTTTTTGGATTTCTTTAAAAATGCC] [+] EMBL BM581883 [CCGAGCTGGCATTCCGGCTAGCAAAGGGGGCCGCTCATCGGTAAATAGCTGGAATTAAGTTTTCGCAGTGTTTTTGGGTGCTCGAAATTATGTCCGCGCTTAAAAGTAACGCGGTCGTCGTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGACGAGACGTACAATTACTGGTAGCCGTTGCACTATCTGCTTAAGGGCAAAGGTTTTCAAACATGGGAATACAGTCCCGAATTTGCCTTGCGGTCCTACAGCTACCTATGGCTACACGGACTGCCGGCGAAAGTGTTGCAGCTGGTGACGGATAATGGTGTTCTTATTTTCTACTTCGTCCGGTGTCTACTGGCTGTAACTTGTGCCTTGCTCGAGTATCGCCTGTACAGGATTTTGGGACGGAAATGTGGCGGCGGTGTGGCTAGTCTGTGGCTGCTATTCCAGCTTACCAGTGCCGGAATGTTTATCTCTAGCGCTGCGCTGTTGCCCAGCAGTTTTTCCATGTACATTACCCTAGCAACGATGGCTGCGTGGCTGAATGAAGATACGCAAACGGCTATTGCGGTAACAGCATTTTCCGGACTGATTGGTTGGCCTTTCGCTGTTATAGTGGCCGTTCCCTTCGTTCTCGAGCTGCTTTTTAGAAAAAGAAAGTTTTTGGATTTCTTTAAAAATGCC] consensusID : consensus_1419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [GGCAGATCGCACGAGGGCAGCTAGCAAGGGGCGNTCATCGGTAATAGCTGGAATTAGTGTTCGCAGTGTNTTGGGTGCTCGGAATTATAGTCCGCGCTTAAAAGTAACGCGGTCGTCGTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGACGAGACGTACAATTACTGGGAGCCGTTGCACTATCTGCTTAAGGGCCAAGGTTTTCAACATGGGAATACAGTCCCGAATTTGCCTTGCGGCCTA] [+] EMBL BX468225 [GGCAGATCGCACGAGGGCAGCTAGCAAGGGGCGNTCATCGGTAATAGCTGGAATTAGTGTTCGCAGTGTNTTGGGTGCTCGGAATTATAGTCCGCGCTTAAAAGTAACGCGGTCGTCGTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGCGACGAGACGTACAATTACTGGGAGCCGTTGCACTATCTGCTTAAGGGCCAAGGTTTTCAACATGGGAATACAGTCCCGAATTTGCCTTGCGGCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1419#0 CCGAGCTGGCATTCCGGCTAGCAAAGGGGGCCGCTCATCGGTAAATAGCTGGAATTAAGT 60 consensus_1419#1 GGCAGATCGCACGAGGGCAGCTAGCAAGGGGCGNTCATCGGTAA-TAGCTGGAATTA-GT 58 ** * *** *** * *** ** ********** ************ ** consensus_1419#0 TTTCGCAGTGTTTTTGGGTGCTCGAAATTAT-GTCCGCGCTTAAAAGTAACGCGGTCGTC 119 consensus_1419#1 GTTCGCAGTGTNTT-GGGTGCTCGGAATTATAGTCCGCGCTTAAAAGTAACGCGGTCGTC 117 ********** ** ********* ****** **************************** consensus_1419#0 GTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGC 179 consensus_1419#1 GTGTTATCGCTTGTAGTAGTGCGTCTCCAGTCCGCCCTGTATTCGATAATTTCCGATTGC 177 ************************************************************ consensus_1419#0 GACGAGACGTACAATTACTGGTAGCCGTTGCACTATCTGCTTAAGGGCAAAGGTTTTCAA 239 consensus_1419#1 GACGAGACGTACAATTACTGGGAGCCGTTGCACTATCTGCTTAAGGGCCAAGGTTTTCAA 237 ********************* ************************** *********** consensus_1419#0 ACATGGGAATACAGTCCCGAATTTGCCTTGCGGTCCTACAGCTACCTATGGCTACACGGA 299 consensus_1419#1 -CATGGGAATACAGTCCCGAATTTGCCTTGCGG-CCTA---------------------- 273 ******************************** **** consensus_1419#0 CTGCCGGCGAAAGTGTTGCAGCTGGTGACGGATAATGGTGTTCTTATTTTCTACTTCGTC 359 consensus_1419#1 ------------------------------------------------------------ consensus_1419#0 CGGTGTCTACTGGCTGTAACTTGTGCCTTGCTCGAGTATCGCCTGTACAGGATTTTGGGA 419 consensus_1419#1 ------------------------------------------------------------ consensus_1419#0 CGGAAATGTGGCGGCGGTGTGGCTAGTCTGTGGCTGCTATTCCAGCTTACCAGTGCCGGA 479 consensus_1419#1 ------------------------------------------------------------ consensus_1419#0 ATGTTTATCTCTAGCGCTGCGCTGTTGCCCAGCAGTTTTTCCATGTACATTACCCTAGCA 539 consensus_1419#1 ------------------------------------------------------------ consensus_1419#0 ACGATGGCTGCGTGGCTGAATGAAGATACGCAAACGGCTATTGCGGTAACAGCATTTTCC 599 consensus_1419#1 ------------------------------------------------------------ consensus_1419#0 GGACTGATTGGTTGGCCTTTCGCTGTTATAGTGGCCGTTCCCTTCGTTCTCGAGCTGCTT 659 consensus_1419#1 ------------------------------------------------------------ consensus_1419#0 TTTAGAAAAAGAAAGTTTTTGGATTTCTTTAAAAATGCC 698 consensus_1419#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||