These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence [GCAGAATCGCCCCGAGGTTATGGAACAGCATCGCCCGGCAAAATGGTTGATGCAAAAGAAGCTTGACGTACAGGACAGAGATCGAATTGGGACACACTCACCGCGATCAGGTACATCTTCGAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAAACCAGCTACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGTTGTAAATAAACCACCTGTTATAAATCCTGGATATNCACCATATCTTGCCGGTCCGTGAATGGTGCTCCACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGGTCCGGGTGTGCACAATAACCTTCCACATTCACTAAACAAATACGACCCGCGCTCCGCTGGCGTTGATCCTCATTTCTCAGATGCGTGTCCTCTGGGTCCGATTGGAATTCGGGTGGAACAACTGNCATATNCTTTTCAGTGTTGAACCGCATGAAANTGGGCCAAAATGGCNAACANCCCGGGCGGCCCATTNGNCNCCTNCAAAGAATTGGCCCATTAAAGATAGGAACCCAAGCGACCATTTCCCACAGGTCAACGGCCTGAGGACACCAGGAGTTCAGAAGCTCCTGCAAAGCCCACTGGGGAGGAAAAGACAGGAAGATGGTGCCAGTCAAACACGAGATACTCCCAAAACCNGAACACAAAATAACCGCTAAACACGNNGGTTGG] [+] EMBL AL933740 [GCAGAATCGCCCCGAGGTTATGGAACAGCATCGCCCGGCAAAATGGTTGATGCAAAAGAAGCTTGACGTACAGGACAGAGATCGAATTGGGACACACTCACCGCGATCAGGTACATCTTCGAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAAACCAGCTACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGTTGTAAATAAACCACCTGTTATAAATCCTGGATATNCACCATATCTTGCCGGTCCGTGAATGGTGCTCCACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGGTCCGGGTGTGCACAATAACCTTCCACATTCACTAAACAAATACGACCCGCGCTCCGCTGGCGTTGATCCTCATTTCTCAGATGCGTGTCCTCTGGGTCCGATTGGAATTCGGGTGGAACAACTGNCATATNCTTTTCAGTGTTGAACCGCATGAAANTGGGCCAAAATGGCNAACANCCCGGGCGGCCCATTNGNCNCCTNCAAAGAATTGGCCCATTAAAGATAGGAACCCAAGCGACCATTTCCCACAGGTCAACGGCCTGAGGACACCAGGAGTTCAGAAGCTCCTGCAAAGCCCACTGGGGAGGAAAAGACAGGAAGATGGTGCCAGTCAAACACGAGATACTCCCAAAACCNGAACACAAAATAACCGCTAAACACGNNGGTTGG] consensusID : consensus_1421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGGGACCCCGTAGCAAGGACTGACTATCCGGCTGTGTGGTACTGAACAAAGTCTCGAAAGCCTTATAAGTCGGCATGTCCCTTATAGGCCGGCATGGCAGGACGTTTACGCCAAATAGAAGAAAAACTGTCCTTGCGTATGCTGGAATGATTATACTGCTAGAGATAAAATTAGTCGTAGATAATCATTGTATTGGATCGTTACAAATAAAAAAGCTTACATGTGGTCATGTGCAAGATAGTAGATACGTGTAGTTCACCTTAAACACGATAATGTCAGTTTAGCTTTGTGTTTCATGAGACATATTTTTTAACTTACAATTTATTCTTTTAACATAATAGGTACATCTTCGAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAAACCAGCTACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGTTGTAAATAAACCACCTGTTATAAATCCTGGATATCCACCATATCTTGCCGGTCCGTTGAATGGTATGATATATAGTTTGAATGATCTTTATCGTGGTATATAATAATTTATGTCTCGTTTTTGTTTCAGGTGCTCCACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGG] [+] EMBL BM583537 [CCGGGACCCCGTAGCAAGGACTGACTATCCGGCTGTGTGGTACTGAACAAAGTCTCGAAAGCCTTATAAGTCGGCATGTCCCTTATAGGCCGGCATGGCAGGACGTTTACGCCAAATAGAAGAAAAACTGTCCTTGCGTATGCTGGAATGATTATACTGCTAGAGATAAAATTAGTCGTAGATAATCATTGTATTGGATCGTTACAAATAAAAAAGCTTACATGTGGTCATGTGCAAGATAGTAGATACGTGTAGTTCACCTTAAACACGATAATGTCAGTTTAGCTTTGTGTTTCATGAGACATATTTTTTAACTTACAATTTATTCTTTTAACATAATAGGTACATCTTCGAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAAACCAGCTACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGTTGTAAATAAACCACCTGTTATAAATCCTGGATATCCACCATATCTTGCCGGTCCGTTGAATGGTATGATATATAGTTTGAATGATCTTTATCGTGGTATATAATAATTTATGTCTCGTTTTTGTTTCAGGTGCTCCACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1421#0 GCAGAATCGCCCCGAGGTTATGGAACAGCATCGCCCGGCAAAATGGTTGATGCAAAAGAA 60 consensus_1421#1 ------------------------------------------------------CCGGGA 6 * * consensus_1421#0 GCTTGACGTACAGGACAGAGATCGAATTGGGACACACTCACCGCGATCAGGTACATCTTC 120 consensus_1421#1 CCCCGTAGCAAGGACTGACTATCCGGCTGTGTGGTACTGAACAAAGTCTCGAAAGCCTT- 65 * * * * * *** ** * *** * * ** * * *** consensus_1421#0 GAATGCATCAACGCCTTCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCAAA 180 consensus_1421#1 --ATAAGTCGGCATGTCCCT-TATAGGCCGGCATGGCAGGACGTTTACGCCAAATAGAAG 122 ** ** * * * * * *** ** * ** ** * * ** consensus_1421#0 ACCAGCTACCCCTACCAACTCGGTAGCAA--GCAACGGTGTTCCAAAGGTTGTAAATAAA 238 consensus_1421#1 AAAAACTGTCCTTGCGTATGCTGGAATGATTATACTGCTAGAGATAAAATTAGTCGTAGA 182 * * ** ** * * * * * * * * * * ** ** ** * consensus_1421#0 CCACC--TGTTATAAATCCTGGATATNCACCATATCTTGCCGGTCCGTGAATGGTGCTCC 296 consensus_1421#1 TAATCATTGTATTGGATCGTT-ACAAATAAAAAAGCTTAC--ATGTGGTCATG-TGCAAG 238 * * *** * *** * * * * * * *** * * * *** *** consensus_1421#0 ACACGATCTTCAAGCAGCTGCCGCTGCCGCTGCTTATGGCGGTCCGGGTGTGCACAATAA 356 consensus_1421#1 ATAGTAGATACGTGTAGTTCACCTTAAACACGATAATGTCAGTTTAGCTTTGTGTT-TCA 297 * * * * * * ** * * * * * *** * ** * * ** * * consensus_1421#0 CCTTCCACATTCACTAAACAAATACGACCCGCGCTCCGCTGGCGTTGATCCTCATTTCTC 416 consensus_1421#1 TGAGACATATTTTTTAACT---TACAATTTAT--TCTTTTAACATAATAGGTACATCTTC 352 ** *** *** *** * ** * * * * * ** consensus_1421#0 AGATGCGTGTCCTCTGGGTCCGATTGGAATTCGGGTGGAACAACTGNCATATNCTTTTCA 476 consensus_1421#1 GAATGCATCAACGCCT--TCTAACAAAAAATTAGATGACAAACCAACCACACCTATTGCA 410 **** * * * ** * ** * * ** * * * ** * ** ** consensus_1421#0 GTGTTGAACCGCATGAAANTGGGCCAAAATGGCNAACANCCCGGGCGGCCCATTNGNCNC 536 consensus_1421#1 A-----AACCAGCT--ACCCCTACCAACTCGGTAGCAAGCAACGGTGTTCCAAAGGT--- 460 **** * * **** ** * * ** * *** * consensus_1421#0 CTNCAAAGAATTGGCCCATTAAAGATAGGAACCCAAGCGACCATTTCCCACAGGTCAACG 596 consensus_1421#1 -TGTAAATAAACCACCTGTTATAAATCCTGGAT--ATCCACCATATCTTGCCGGTCCGTT 517 * *** ** ** *** * ** * * ***** ** * **** consensus_1421#0 GCCTGAGGACACCAGGAGTTCAGAAGCTCCTGCAAAGCCCACTGGGGAGGAAAAGACAGG 656 consensus_1421#1 GAATGGTATGATATATAGTTTGAATGATCTTTATCGTGGTATATAATAATTTATGTCTCG 577 * ** * **** * * ** * * * * * * * consensus_1421#0 AAGATGGTGCCAGTCAAACACGAGATACTCCCAAAACCNGAACACAAAATAACCGCTAAA 716 consensus_1421#1 TTTTTGTTTCAGGTGCTCCACACGATCTTCAAGCAGCTGCCGCT-------GCCGCTGCT 630 ** * * ** *** *** ** * * * ***** consensus_1421#0 CACGNNGGTTGG 728 consensus_1421#1 TATGGCGG---- 638 * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||