cluster # 1440

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Anopheles gambiae
cluster # 1440 cluster # 1440 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1440#0 length = 825 sequences # 1

consensus_1440#1 length = 662 sequences # 1

consensusID : consensus_1440#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 825
fasta sequence

                              [CCCGAGGTTNTTACGGTGCGATTGTTATACTGTATTTGTTTTCTTACTACTCTTATTACTGTTTTTGTTTGGAGTTTGTTGCGATAAATCTAACATTAAGTGCAAGTAAATGCTATATTTGTATGTATAGTTTAGTGTAGTGCGCCACACCTACCTACACCAATTGTAACATCTCGTAGAGTCGATTGAAAAAGGCACGAAAGCTTAGAAGAAGAAGAAGAAGTAGTAGAGCAANNAAACCTACTAGGAAGTAGAGAAATTTTGCGCACAAAAGCAGTTTACTCCTCTAAGCTGTAACAGTGAAACANGAGTAACTAGGCGAAACGATGAGAAGCACNCACGCACGGCACGACACACACCAANAACAAACCACAAACAAAAAACACACACCACAAAATATATTACCAACTCAGTTCANAGGTACAACAACTTACACAACGCTAAGACAAAAACCAACAAANCAAAACAAACAANAACTTAACTCCATGCTACAAGCACGAAACCCTACACAAGGCAGCACGCAGCACGCAGCAGCGAGCGTCACAGCACAGCAACACAGCACACCANANACACCAAAACCNACTAACTCACGGTANACAAACTACCCAAATCAAATGGCCCCGCGCATCCGCCCAGCCGCCCCTCCGCTCACGGCCGCCACCACACGGGCTGCCGTGCGTCGGCCGCTGCGTCCCTCGTAACACACAACTTATTGCNCCGCACCCCGCTGCATTGCCGTGCCGCCCTCTCTGTCGTGNCGCGTCGNTCACGCTCNCGGGCGGTCAGCTTCTGACTCCGCNNNCATGNCTTCCACCCCCCNCANCC]

[+] EMBL AL692165             [CCCGAGGTTNTTACGGTGCGATTGTTATACTGTATTTGTTTTCTTACTACTCTTATTACTGTTTTTGTTTGGAGTTTGTTGCGATAAATCTAACATTAAGTGCAAGTAAATGCTATATTTGTATGTATAGTTTAGTGTAGTGCGCCACACCTACCTACACCAATTGTAACATCTCGTAGAGTCGATTGAAAAAGGCACGAAAGCTTAGAAGAAGAAGAAGAAGTAGTAGAGCAANNAAACCTACTAGGAAGTAGAGAAATTTTGCGCACAAAAGCAGTTTACTCCTCTAAGCTGTAACAGTGAAACANGAGTAACTAGGCGAAACGATGAGAAGCACNCACGCACGGCACGACACACACCAANAACAAACCACAAACAAAAAACACACACCACAAAATATATTACCAACTCAGTTCANAGGTACAACAACTTACACAACGCTAAGACAAAAACCAACAAANCAAAACAAACAANAACTTAACTCCATGCTACAAGCACGAAACCCTACACAAGGCAGCACGCAGCACGCAGCAGCGAGCGTCACAGCACAGCAACACAGCACACCANANACACCAAAACCNACTAACTCACGGTANACAAACTACCCAAATCAAATGGCCCCGCGCATCCGCCCAGCCGCCCCTCCGCTCACGGCCGCCACCACACGGGCTGCCGTGCGTCGGCCGCTGCGTCCCTCGTAACACACAACTTATTGCNCCGCACCCCGCTGCATTGCCGTGCCGCCCTCTCTGTCGTGNCGCGTCGNTCACGCTCNCGGGCGGTCAGCTTCTGACTCCGCNNNCATGNCTTCCACCCCCCNCANCC]




>consensus_1440#0
CCCGAGGTTNTTACGGTGCGATTGTTATACTGTATTTGTTTTCTTACTACTCTTATTACT
GTTTTTGTTTGGAGTTTGTTGCGATAAATCTAACATTAAGTGCAAGTAAATGCTATATTT
GTATGTATAGTTTAGTGTAGTGCGCCACACCTACCTACACCAATTGTAACATCTCGTAGA
GTCGATTGAAAAAGGCACGAAAGCTTAGAAGAAGAAGAAGAAGTAGTAGAGCAANNAAAC
CTACTAGGAAGTAGAGAAATTTTGCGCACAAAAGCAGTTTACTCCTCTAAGCTGTAACAG
TGAAACANGAGTAACTAGGCGAAACGATGAGAAGCACNCACGCACGGCACGACACACACC
AANAACAAACCACAAACAAAAAACACACACCACAAAATATATTACCAACTCAGTTCANAG
GTACAACAACTTACACAACGCTAAGACAAAAACCAACAAANCAAAACAAACAANAACTTA
ACTCCATGCTACAAGCACGAAACCCTACACAAGGCAGCACGCAGCACGCAGCAGCGAGCG
TCACAGCACAGCAACACAGCACACCANANACACCAAAACCNACTAACTCACGGTANACAA
ACTACCCAAATCAAATGGCCCCGCGCATCCGCCCAGCCGCCCCTCCGCTCACGGCCGCCA
CCACACGGGCTGCCGTGCGTCGGCCGCTGCGTCCCTCGTAACACACAACTTATTGCNCCG
CACCCCGCTGCATTGCCGTGCCGCCCTCTCTGTCGTGNCGCGTCGNTCACGCTCNCGGGC
GGTCAGCTTCTGACTCCGCNNNCATGNCTTCCACCCCCCNCANCC

consensusID : consensus_1440#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 662
fasta sequence

                              [CCGCGATTGTTATACTGTATTTGTTTTCTTACTACTCTTATTACTGTTTTTGTTTGGAGTTTGTTGCGATAAATCTAACATTAAGTGCAAGTAAATGCTATATTTGTCTGTATAGTTTAGTGTAGTGCGCCACACCTACCTACACCAATTGTAACATCTCGTAGAGTCGATGGAAAAAAGCACGAAAGCTTAGGAGATGAAGTGAAGAAGAAGAAGAAAAAACATTCAAACAATACAACAAAACCTACTTTGAAATATCATCTTAAAGGACAATACATAGTTGTTAAAGTAAAATATAAAGAAAATGTGACGGAAGAAAATTATGCAAATGGATGGTGATGGATAACAACTACAATCTTTAAGGTTTACGACTTTAAGTGGAATTAATGTAGCAATTAAAAACAAAAAAAAAAAGCACACAGACAGACACAAAACAGCGCGTAGTAAATAGAGCGGTGGTGAGTGTTGTAGTCGGAAGGTGAACGGTGGCATGGGTTGAAGCGAATTCTAATGTTATTAACATCAGTAGAAGAGAAGTAGGTTGAAATAATCAAAAACACACACACACACACACACACACACACACACTTATAAACAATTGCGCTAAACACAGGCCACAATAATTGATGGAAAATACGAAACGTGTGCAAATATTACATGTA]

[+] EMBL BM630380             [CCGCGATTGTTATACTGTATTTGTTTTCTTACTACTCTTATTACTGTTTTTGTTTGGAGTTTGTTGCGATAAATCTAACATTAAGTGCAAGTAAATGCTATATTTGTCTGTATAGTTTAGTGTAGTGCGCCACACCTACCTACACCAATTGTAACATCTCGTAGAGTCGATGGAAAAAAGCACGAAAGCTTAGGAGATGAAGTGAAGAAGAAGAAGAAAAAACATTCAAACAATACAACAAAACCTACTTTGAAATATCATCTTAAAGGACAATACATAGTTGTTAAAGTAAAATATAAAGAAAATGTGACGGAAGAAAATTATGCAAATGGATGGTGATGGATAACAACTACAATCTTTAAGGTTTACGACTTTAAGTGGAATTAATGTAGCAATTAAAAACAAAAAAAAAAAGCACACAGACAGACACAAAACAGCGCGTAGTAAATAGAGCGGTGGTGAGTGTTGTAGTCGGAAGGTGAACGGTGGCATGGGTTGAAGCGAATTCTAATGTTATTAACATCAGTAGAAGAGAAGTAGGTTGAAATAATCAAAAACACACACACACACACACACACACACACACACTTATAAACAATTGCGCTAAACACAGGCCACAATAATTGATGGAAAATACGAAACGTGTGCAAATATTACATGTA]




>consensus_1440#1
CCGCGATTGTTATACTGTATTTGTTTTCTTACTACTCTTATTACTGTTTTTGTTTGGAGT
TTGTTGCGATAAATCTAACATTAAGTGCAAGTAAATGCTATATTTGTCTGTATAGTTTAG
TGTAGTGCGCCACACCTACCTACACCAATTGTAACATCTCGTAGAGTCGATGGAAAAAAG
CACGAAAGCTTAGGAGATGAAGTGAAGAAGAAGAAGAAAAAACATTCAAACAATACAACA
AAACCTACTTTGAAATATCATCTTAAAGGACAATACATAGTTGTTAAAGTAAAATATAAA
GAAAATGTGACGGAAGAAAATTATGCAAATGGATGGTGATGGATAACAACTACAATCTTT
AAGGTTTACGACTTTAAGTGGAATTAATGTAGCAATTAAAAACAAAAAAAAAAAGCACAC
AGACAGACACAAAACAGCGCGTAGTAAATAGAGCGGTGGTGAGTGTTGTAGTCGGAAGGT
GAACGGTGGCATGGGTTGAAGCGAATTCTAATGTTATTAACATCAGTAGAAGAGAAGTAG
GTTGAAATAATCAAAAACACACACACACACACACACACACACACACACTTATAAACAATT
GCGCTAAACACAGGCCACAATAATTGATGGAAAATACGAAACGTGTGCAAATATTACATG
TA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1440#0      CCCGAGGTTNTTACGGTGCGATTGTTATACTGTATTTGTTTTCTTACTACTCTTATTACT 60
consensus_1440#1      ---------------CCGCGATTGTTATACTGTATTTGTTTTCTTACTACTCTTATTACT 45
                                       *******************************************

consensus_1440#0      GTTTTTGTTTGGAGTTTGTTGCGATAAATCTAACATTAAGTGCAAGTAAATGCTATATTT 120
consensus_1440#1      GTTTTTGTTTGGAGTTTGTTGCGATAAATCTAACATTAAGTGCAAGTAAATGCTATATTT 105
                      ************************************************************

consensus_1440#0      GTATGTATAGTTTAGTGTAGTGCGCCACACCTACCTACACCAATTGTAACATCTCGTAGA 180
consensus_1440#1      GTCTGTATAGTTTAGTGTAGTGCGCCACACCTACCTACACCAATTGTAACATCTCGTAGA 165
                      ** *********************************************************

consensus_1440#0      GTCGATTGAAAAAGGCACGAAAGCTTAGAAGAAGAAGAAGAAGTAGTAGAGCAANNAAAC 240
consensus_1440#1      GTCGATGGAAAAAAGCACGAAAGCTTAGGAGATGAAGT-GAAGAAGAAGAAGAAAAAACA 224
                      ****** ****** ************** *** ****  **** ** ***  **  **  

consensus_1440#0      CTACTAGGAAGTAGAGAAATTTTGCGCACAAAAGCAGTTTACTCCTCTAAGCTGTAACAG 300
consensus_1440#1      TTCAAACAATACAACAAAACCTACTTTGAAATATCATCTTA--------------AAGGA 270
                       *   *  *   *   ***  *       ** * **  ***              **   

consensus_1440#0      TGAAACANGAGTAACTAGGCGAAACGATGAGAAGCACNCACGCACGGCACGACACACACC 360
consensus_1440#1      CAATACATAGTTGTTAAAGTAAAATATAAAGAAAATGTGACGGAAGA---AAATTATGCA 327
                        * ***    *    * *  ***     ****      *** * *     *   *  * 

consensus_1440#0      AANAACAAACCACAAACAAAAAACACACACCACAAAATATATTACCAACTCAGTTCANAG 420
consensus_1440#1      AATGGATGGTGATGGATAACAACTACAATCTTTAAGGTTTACGACT-------TTAAGTG 380
                      **         *   * ** **  ***  *   **  * **  **        ** *  *

consensus_1440#0      GTACAACAACTTACACAACGCTAAGACAAAAACCAACAAANCAAAACAAACAANAACTTA 480
consensus_1440#1      G------AATTAATGTAGCAATTAAAAACAAAAAAAAAAAGCACA-CAGACAGACACAAA 433
                      *      ** * *   * *  * * * * ***  ** *** ** * ** ***   **  *

consensus_1440#0      ACTCCATGCTACAAGCACGAAACCCTACACAAGGCAGCACGCAGCACGCAGCAGCGAGCG 540
consensus_1440#1      ACAGCGCGTAGTAA--ATAGAGCGGTGGTGAGTGTTGTAGTCGGAAGGTGAACGGTGGCA 491
                      **  *  *    **  *   * *  *    *  *  * *  * * * *     *   ** 

consensus_1440#0      TCACAGCACAGCAACACAGCACACCANANACACCAAAACCNACTAACTCACGGTANACAA 600
consensus_1440#1      T-GGGTTGAAGCGAATTCTAATGTTATTAACATCAGTAGAAGAGAAGTA--GGTTGA--A 546
                      *        *** *      *    *   *** **  *      ** *   ***  *  *

consensus_1440#0      ACTACCCAAATCAAATGGCCCCGCGCATCCGCCCAGCCGCCCCTCCGCTCACGGCCGCCA 660
consensus_1440#1      ATAATCAAAAACACACACACACACACACACACACACACACACTTATAAACAATTGCGCTA 606
                      *  * * *** ** *    * * * **  * * **  * * * *     **    *** *

consensus_1440#0      CCACACGGGCTGCCGTGCGTCGGCCGCTGCGTCCCTCGTAACACACA-ACTTATTGCNCC 719
consensus_1440#1      A-ACACAGGCCACAATA-----ATTGATGGAAAATACGAAACGTGTGCAAATATTACAT- 659
                        **** ***  *  *         * **       ** ***      *  **** *   

consensus_1440#0      GCACCCCGCTGCATTGCCGTGCCGCCCTCTCTGTCGTGNCGCGTCGNTCACGCTCNCGGG 779
consensus_1440#1      GTA--------------------------------------------------------- 662
                      * *                                                         

consensus_1440#0      CGGTCAGCTTCTGACTCCGCNNNCATGNCTTCCACCCCCCNCANCC 825
consensus_1440#1      ----------------------------------------------