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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1229 fasta sequence
[AAAATCCCCCNCAGTTTTAATTAAGAACACATTTAATTTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCATACATAATTTTCCTCGCAATTTTCAACAGCATTTCAATTCATATCATACACACAGTTCATTGTGGCACATCAACTCATTTTCACACATCATGTCACATTCACAAATGCAACATGTTAATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATGCACATTTCACATTTCAGCCTTCATTCTATTCTTCATTCAACGTCTCACATNCTCTCCACATCNCACNATNCAATTTCAAACATCACCAGGTCACATAATANTCNCAGGGCATTGCAGCCCTTTTCACACACATCAACACCACCATCNCCATCATACTTACTTCCAATCCACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAGGCCCTCTCACNCNACACANATNCAGGCCCTCATTCTAATTTTCAACATTCACAACAATTATCTGGGTNTCCAATTACACACTTCNTCCATTANCTCAATCCATTACAANCCACCCAATTCATCATNTCCCACAANTTCNCCCCCCACTTTCCCACCCATCTCCANTCTCTCTCAATTATACNNACATACTCCNCANACACTTACTCGTCACAATTACAACATTAACGAACAAAANTATCTTCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTACAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCGGACTTAAAGGGGGCTCTTCTGNCACACGTCGGAACACGGGAAACCCTCTTCCGAGCCACACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAACACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCATAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAGCGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAACTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGGGTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA]
[+] EMBL AL692186 [AAAATCCCCCNCAGTTTTAATTAAGAACACATTTAATTTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCATACATAATTTTCCTCGCAATTTTCAACAGCATTTCAATTCATATCATACACACAGTTCATTGTGGCACATCAACTCATTTTCACACATCATGTCACATTCACAAATGCAACATGTTAATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATGCACATTTCACATTTCAGCCTTCATTCTATTCTTCATTCAACGTCTCACATNCTCTCCACATCNCACNATNCAATTTCAAACATCACCAGGTCACATAATANTCNCAGGGCATTGCAGCCCTTTTCACACACATCAACACCACCATCNCCATCATACTTACTTCCAATCCACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAGGCCCTCTCACNCNACACANATNCAGGCCCTCATTCTAATTTTCAACATTCACAACAATTATCTGGGTNTCCAATTACACACTTCNTCCATTANCTCAATCCATTACAANCCACCCAATTCATCATNTCCCACAANTTCNCCCCCCACTTTCCCACCCATCTCCANTCTCTCTCAATTATACNNACATACTCCNCANACACTTACTCGTCACAATTACAACATTAACGAACAAAANTATCTTCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTACAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCGGACTTAAAGGGGGCTCTTCTGNCACACGTCGGAACACGGGAAACCCTCTTCCGAGCCACACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAACACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCATAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAGCGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAACTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGGGTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA]
consensusID : consensus_1444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1057 fasta sequence
[ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAATTTCATGTACCTGTGTATCCAGGGTTTCATTAACATAATCAAATTCATTCATCACATCAATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTTATTGTGGCACATCAACTCATTTTCAACATCATGGTCACATCTCAGCACACATGCACACCATGGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTTTATTCACACAAAATGCAATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAATTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCATTGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNTATCAATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCACACATTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCCACACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTCCACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACAACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTTTCATCCAAGATTCCACACTTCNTCCAATTCGTCCATTCACACANCCATTCTCTCAAGCGTTCCAATCTCCAATTTACAACACACATCTTNTTCCAATTCCATCCACAACCAAGCGTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCTACTCACAACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCGAGCCCCACAACAAATTCTTCAACAACAATTTCAATTCCATTTTCCCAACCCCCCTGTGGAGTNTTATTAAAAAACCCCA]
[+] EMBL AL930888 [ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAATTTCATGTACCTGTGTATCCAGGGTTTCATTAACATAATCAAATTCATTCATCACATCAATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTTATTGTGGCACATCAACTCATTTTCAACATCATGGTCACATCTCAGCACACATGCACACCATGGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTTTATTCACACAAAATGCAATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAATTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCATTGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNTATCAATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCACACATTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCCACACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTCCACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACAACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTTTCATCCAAGATTCCACACTTCNTCCAATTCGTCCATTCACACANCCATTCTCTCAAGCGTTCCAATCTCCAATTTACAACACACATCTTNTTCCAATTCCATCCACAACCAAGCGTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCTACTCACAACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCGAGCCCCACAACAAATTCTTCAACAACAATTTCAATTCCATTTTCCCAACCCCCCTGTGGAGTNTTATTAAAAAACCCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1444#0 ---------------------AAAATCCCCCNCAGTTTTAATTAAGAAC--ACATTTAAT 37
consensus_1444#1 ACTGCCCCCGAGCTTTCAAANTAATTGCAACNCAATTTCCATTTTCAGCCAANATTTAAT 60
** * * **** *** *** * * * *******
consensus_1444#0 TTCACCGTACCTTGTGTATCCAGGGTTTCATTCACATAATCAACATTCATTCAT-ACATA 96
consensus_1444#1 TTCAT-GTACCT-GTGTATCCAGGGTTTCATTAACATAATCAA-ATTCATTCATCACATC 117
**** ****** ******************* ********** ********** ****
consensus_1444#0 A---TTTTCCTCGCA-ATTTTCAACAGCATTTCAA--TTCATATCATACACACAGTTCAT 150
consensus_1444#1 AATTTTTCCTCCGCACATTTTCAACAGCATTTCANATTTCATATCATACACACAGTT-AT 176
* *** * **** ****************** ******************** **
consensus_1444#0 TGTGGCACATCAACTCATTTTCACACATCATG-TCACATT------CACAAATGCAACAT 203
consensus_1444#1 TGTGGCACATCAACTCATTTTCA-ACATCATGGTCACATCTCAGCACACATGCACACCAT 235
*********************** ******** ****** **** ** ***
consensus_1444#0 GTTA----ATCCGCTATTTCACACACATCATCATCCTAAGTTTCTATCTCAAGCAACATG 259
consensus_1444#1 GGTTTCACATCCGGTTTTATCAACACATCATCATCCTCAGTTT-TAT-TCACACAAAATG 293
* * ***** * ** *************** ***** *** *** *** ***
consensus_1444#0 CACATTTCACATTTCAGCCTTCATTCTATTC-TTCATTCAACGTCTCACATNCTCTCCAC 318
consensus_1444#1 CA-ATTTCACATATTCAGCTTCATTTCATTTATTCATTCAAGGTATCACATTTTTTCAAA 352
** ********* * ******* *** ********* ** ****** * ** *
consensus_1444#0 ATCNCACNATN-CAATTTCAAACATCAC-CAGGTCACA-----TAATANTCNCAGGGCAT 371
consensus_1444#1 TTCTCACAATCACACTTCCACACATCACACAGTCCACAATCCATTTNTATCACAGGGCAT 412
** *** ** ** ** ** ******* *** **** * ** ********
consensus_1444#0 TGCAGCCCTTTTCACACAC----ATCAACACCACCATCNCCATCATACTTACTTCCAATC 427
consensus_1444#1 TGCAGCCCTCTCTCCNCACCACAATCAAANCACATATTTCAATCATNTTTNTTNT--ATC 470
********* * * *** ***** * ** * ***** ** * ***
consensus_1444#0 CACAATTNATNCTCCCACNCATTCNNNCACACTNNATTCANAG---GCCCTCTCACNCNA 484
consensus_1444#1 AATCACAATCTCTCTCATCCACCACAATCCACACCATTCATNACAAGCCCTTTCACACCA 530
* * *** ** ** *** ***** ***** **** * *
consensus_1444#0 CACANATNCAGGCCCTCATTCTAATTTTC-AACA-TTCACAACAATTATCTGGGTNTCCA 542
consensus_1444#1 CACA--TTCAAGCCTCAATTTTCATTTTCCAACAATTCACAACATCTCTGGTTCAATTCC 588
**** * ** *** *** * ****** **** ********* * * * *
consensus_1444#0 ATTACACACTTCNTCCATTANCTCAATCCATTACAANC---CACCCAATTCATCATNTCC 599
consensus_1444#1 AC-ACATACTTCCAATACTTTCTNCTCTCAATNCACACACACACACAATATCNATCTTTC 647
* *** ***** * * ** ** * ** * *** **** * *
consensus_1444#0 CACAANTTCNCCCC-CCACTTTCCCACCC--ATCTCCANTCTCTCTCAATTATACNNACA 656
consensus_1444#1 CACCACTTCNCCACACCAATTCTTCACNCCAATTTTAATTCTTCTCCAATTTTCAACACA 707
*** * ****** * *** ** *** * ** * * *** ***** * ***
consensus_1444#0 -TACTCCNCANACACT----TACTCGTCACAATTACAACATTAACG-AACAAAANTATCT 710
consensus_1444#1 ACAATCCTCNCACACCACTCTCTTTCCCACNACTCCACCACTCTCACAACACANCCATTT 767
* *** * **** * * *** * * ** ** * * **** * ** *
consensus_1444#0 TCACGNTTAAAAGTTCACNTTGGANTTCACAACCACAACTCTANCGGCTAACTTAACTTA 770
consensus_1444#1 TCA--TCCAAGATTCCACACTTCNTC-CAATTCGTCCATTCACACANCCATTCTCTCAAG 824
*** ** * * *** * ** * * * ** * * * * *
consensus_1444#0 CAACACTNATCTCAACTTACATCTCNNCNAACACGGNTTAACTCTTTCANACTTCTCTCG 830
consensus_1444#1 CGTTCCAATCTCCAATTTACAAC--ACACATCTTNTTCCAATTCCATC-CACAACCAAGC 881
* * *** ***** * * * ** ** ** ** *
consensus_1444#0 GACTTAAAGGGGGCTCTTCTGNCACACGTCGG-AACACGGGAAACCCTCTTCCGAGCCAC 889
consensus_1444#1 GTTTCAACAATTCTACACNAATTATTCNTCGGCAATACAAAGGAGTGTACTCT-ACTCAC 940
* * ** * * * **** ** ** * * ** * ***
consensus_1444#0 ACACTTNTAANACACTACTTAACTTTTCCACCCCTGGGTAGTATAACAGCNAAAGAAAAC 949
consensus_1444#1 AACAGTTCGGGCCACCAGGCCACGATTCTTCCCCGGCG------AGCCCCACAACAAATT 994
* * *** * ** *** **** * * * * * ** ***
consensus_1444#0 ACCCAATTGTTCATTCTTCAGCAGGGCACATTGTTTAAACTTTATTATACAACAGGATCA 1009
consensus_1444#1 CTTCAACAA--CAAT-TTCAAT----TCCATTTTCCCAACCCCCCTGTGGAGTNTTATTA 1047
*** ** * **** **** * *** * * * ** *
consensus_1444#0 TAAGGCCCCTTGGTCCCCCCACGTGGCCAGATTTTTTTTCAACACAAGCGGGACCCCGAG 1069
consensus_1444#1 AAAAACCCCA-------------------------------------------------- 1057
** ****
consensus_1444#0 CGAGGGCANACATTTTATAGGAACCCCGGCTTGCCGACACGGCTAACCATTACAGTCCAA 1129
consensus_1444#1 ------------------------------------------------------------
consensus_1444#0 CTCAAGGTNCCCTTTTCTACTAACTTCTAGANCAGCGGCGTGGAGCTACTATGAACTGGG 1189
consensus_1444#1 ------------------------------------------------------------
consensus_1444#0 GTTTGGACACATGGCACGAAATACTTANTAACCCTGGATA 1229
consensus_1444#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||