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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1090 fasta sequence
[GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGGCGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCCCCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTATCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTGACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTATGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTATATGGTACGNAANCCNGCTACACGGTNGTTGNNCATGCCNTATCCCTGGAAACCCCACTTCATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCAACTTCCGGCCACAACACCGGCCAAACCGGNTCAACAACACAGGTTNATTCACNGGCTACCCCAATCTATGGGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGACATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCCCTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGCGACTTGGGCGNNAACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACATGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCCCGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCANATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCCAAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNACAGTTGATCAACANTCA]
[+] EMBL AL692220 [GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGGCGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCCCCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTATCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTGACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTATGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTATATGGTACGNAANCCNGCTACACGGTNGTTGNNCATGCCNTATCCCTGGAAACCCCACTTCATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCAACTTCCGGCCACAACACCGGCCAAACCGGNTCAACAACACAGGTTNATTCACNGGCTACCCCAATCTATGGGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGACATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCCCTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGCGACTTGGGCGNNAACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACATGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCCCGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCANATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCCAAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNACAGTTGATCAACANTCA]
consensusID : consensus_1446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CCGAAGCGATCGGTGGAGAGCATTATTCAAACGTTGCGGTTATTTTTTGCTCATTTGCTTCCCCCTCGGTCCTGCGTTCGAACTCCCTGGCGGTACCTGCCATACCGCATCACCAGCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTGTTCGTGAGGATTTGGTCTGCCGGTATGGCAAACGAGATAACCACGGAACAGCATCCGGAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTTGTGATATCCGTAATTTATGTCGCTAGCTTGTACGTATGGAACTCCAAACACGACCGCGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGCTCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCAGATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCACGAATGGTTCTTGTTTCTCGGTCCGCTCAGCGTACAGCTATCGAACGGCATCTGGCGCATCTACTTCCGAGCCGATGTACTGGACTGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGGTCGGAGGAATTCACCTTTCGTGCCTGTATGTTGC]
[+] EMBL BM584100 [CCGAAGCGATCGGTGGAGAGCATTATTCAAACGTTGCGGTTATTTTTTGCTCATTTGCTTCCCCCTCGGTCCTGCGTTCGAACTCCCTGGCGGTACCTGCCATACCGCATCACCAGCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTGTTCGTGAGGATTTGGTCTGCCGGTATGGCAAACGAGATAACCACGGAACAGCATCCGGAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTTGTGATATCCGTAATTTATGTCGCTAGCTTGTACGTATGGAACTCCAAACACGACCGCGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGCTCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCAGATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCACGAATGGTTCTTGTTTCTCGGTCCGCTCAGCGTACAGCTATCGAACGGCATCTGGCGCATCTACTTCCGAGCCGATGTACTGGACTGAATGCGGTGCGCAATCTGGTGTGGCTGCGGAACCACCTCGTGGCGCCACTGGTCGGAGGAATTCACCTTTCGTGCCTGTATGTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1446#0 GCAGAATCCCCCGAGTTATTTCTCGGTCGCTCAGCGTACAGCTATNGAACGGTNATCTGG 60
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 CGCATCTACTCCGAGCCGATGTACTGGATAGAATGCGGTGCGCAATCTGGTGTGGCTGCG 120
consensus_1446#1 ----------------------------------------------------------CC 2
*
consensus_1446#0 GAACCACCTCGTGGCGC-CACTGTACGGAGGAATTCACCTTTCGTGCCTGCTATGTTGCC 179
consensus_1446#1 GAAGCGATCGGTGGAGAGCATTATTCAAACG---TTGCGGTTATTTTTTGCTCATTTGCT 59
*** * **** * ** * * * * * * * ** * **** ****
consensus_1446#0 CCTGACTGCTGCAAACGTTATCGACCATCAATCGCAATGCTGATCACACCGNTATCTGTA 239
consensus_1446#1 TCCCCCTCGGTCCTGCGT--TCGAAC-TCCCTGGCGGTACCTGCCATACCGC-ATCACCA 115
* ** * *** **** * ** * ** * * ** **** *** *
consensus_1446#0 TCGGGCTGGACGCATACTGNAACATATTAAGGAGCGCCTGCAGAACAGGGGCGCCCACTG 299
consensus_1446#1 GCTTGCCAAACGAATGCCAAAGTGGAACAGCTGGTACCGATTTTGCAGCGCTGGGATCTG 175
* ** *** ** * * * * * ** *** * * ***
consensus_1446#0 ACGGGNAGGTGCTGATAACTATCGTTCTTCCAAAATATTCACTACANACAACCAATCTTA 359
consensus_1446#1 TTCGTGAGGATTTGGT--CTGCCGGTATGGCAAACGAGATAAC-CACGGAACAGCATCCG 232
* *** ** * ** ** * * **** * * ** ***
consensus_1446#0 TGGGCCATTCTTACCTCGGGCACCATCCTATTCCGGTGCAGGGTCCGCGAGACANTNTAT 419
consensus_1446#1 GAGGCCACGGGCACAGTGACCGTTTACCTATCGCCCTTCGTGTCGGTTGGGGCCTGTTTT 292
***** ** * * ***** * * * * * * * * *
consensus_1446#0 ATGGTACGNAANCCNGCTACACGGTNG-TTGNNCATGCCNTATCCCTGGAAACCCCACTT 478
consensus_1446#1 GTGATATCCGTAATTTATGT-CGCTAGCTTGTACGTATGGAACTCC---AAACACGACCG 348
** ** * ** * * *** * * * ** **** * **
consensus_1446#0 CATTGNGGAATATACCCCGGCACNGCTCCCACANAACNGGCTCGCCA-ACTTCCGGCCAC 537
consensus_1446#1 CGATCATCCTTCAACCATAAAGCGACGGTTTTTTAGCGTGTTTGTGGTAATGCTCGTAGC 408
* * * *** * * * * * * * * * * * *
consensus_1446#0 AACACCGGCCAAACCGGNTC--AACAACACAGGTTNATTCACNGGCTACCCCAATCTATG 595
consensus_1446#1 TCCATTTTTCGTGCTAACCCTTACCAGCAAGGATGTGTTCCAGCGGTACACGATGTGGCA 468
** * * * * ** ** * * *** * *** * *
consensus_1446#0 GGGAATTCATCACAAACCGCTTGGCGNCCCCGCGACCATGGCAAANCNGANGCTTCGGAC 655
consensus_1446#1 GATAATGGGCTTCCGGAAGGAAGGGCTGTTTACCGCCACGTTCGTTCCCCTGCTCCTCAC 528
* *** * * ** * *** * * *** * **
consensus_1446#0 ATNTCGATCCCCTTANCATGGGCNTCACNCACTNACACNCCACNACCGGCACCNAACGCC 715
consensus_1446#1 GAAT-GGTTCTTGTTTCTCGGTCCGCTCA-GCGTACAGCTATCGAACGGCATCTGGCGCA 586
* * * * * * ** * * * * *** * * ***** * ***
consensus_1446#0 CTCGGNNTTACACCACCTNCAACCCAACATNACCGNAGCNCNNNGGC-GACTTGGGCGNN 774
consensus_1446#1 TCTACTTCCGAGCCGATGT--ACTGGAC-TGAATGCGGTGCGCAATCTGGTGTGGCTGCG 643
** ** ** * * * * * * * *** *
consensus_1446#0 AACNNACCTANAATTAACACACTTCTTATAACGGAGGACAACGCANNGACACCGGANACA 834
consensus_1446#1 GAACCACCTCGTG-----GCGCCACTGGT--CGGAGGA--ATTCACCTTTCGTGCCTGTA 694
* **** * * ** * ******* * ** * *
consensus_1446#0 TGNGNCNGCCCCACATTTTGTCAGACTNAACTATTGACCCCATGGCGGTATGGGTACCCC 894
consensus_1446#1 TGTTGC------------------------------------------------------ 700
** *
consensus_1446#0 CGCTATTTACAACNNGGTTAGCGGTACTAGGTCTGGTNCCCAAATAGACTACTCTNGCCA 954
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 NATTGANTNNAAANAAAAATAGCNTCNNACAAGTCCCGTATCCCCTCAGATGGTTGACCC 1014
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 AAACNGACNAGTTTNATCCCCTTAAACTTGNTATACACCCAAAAGATACAGCGACACNAC 1074
consensus_1446#1 ------------------------------------------------------------
consensus_1446#0 AGTTGATCAACANTCA 1090
consensus_1446#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||