These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [CCGAAAAGATTTGTAGTTGAAACTGCCTAAAAATTGTTCCGGGAAATTACTTCGGATATACCGCCATCGCGTACATAGAACATCCACCGAATAGCGGCAGCAGCAGCAGCGATTCAAAGTGTTTGTGTGTGTGTGTGTATGTATGTGTGCGCGAAGATTCGTCTTGCGGGCGTTTCTCTCTCTCCTCGGTAGATTTGATGGCGCGGGTACGGTTCCGTCGCCAAGTGCAGTTTGCAGCCATAGTTTCGTCCCTGCCAAAAGGAGTGTGAAAAGATCTTCTAGTAGAGTATCTCTTAACGGCGCACGACGGCGGTTGGTGGTGGTTGTCCATTTTGGGTTTTTTTCGCTTTACTTCACGTGGACGATAATGCAATGAATCGGTGCTGTGCGATTTCAGCGGTATCATATCGGTATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAATGAGCGAAACCCCCGGAGTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGGCTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGTTGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCTAACCATTGCACTGC] [+] EMBL BM610194 [CCGAAAAGATTTGTAGTTGAAACTGCCTAAAAATTGTTCCGGGAAATTACTTCGGATATACCGCCATCGCGTACATAGAACATCCACCGAATAGCGGCAGCAGCAGCAGCGATTCAAAGTGTTTGTGTGTGTGTGTGTATGTATGTGTGCGCGAAGATTCGTCTTGCGGGCGTTTCTCTCTCTCCTCGGTAGATTTGATGGCGCGGGTACGGTTCCGTCGCCAAGTGCAGTTTGCAGCCATAGTTTCGTCCCTGCCAAAAGGAGTGTGAAAAGATCTTCTAGTAGAGTATCTCTTAACGGCGCACGACGGCGGTTGGTGGTGGTTGTCCATTTTGGGTTTTTTTCGCTTTACTTCACGTGGACGATAATGCAATGAATCGGTGCTGTGCGATTTCAGCGGTATCATATCGGTATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAATGAGCGAAACCCCCGGAGTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGGCTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGTTGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCTAACCATTGCACTGC] consensusID : consensus_1450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGCCCACGCGTCCGATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAATGAGCGAAACCCCCGGAGTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGGCTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGTTGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCTAACCATTGCACTGCTTCCGATTGCTCAAAAACTACAAAAGCGATCTAACTCGAACCAACTGCAAGGATATTCAAATAGTTCCTTTCGTTTTAAGAGAAGCTGTATTTATGTATATTTATTATTCACACTGTTTAAAAAAATGCATGCGCATATTGTATAAGTCGTCGTTAGCGTACGTCATATAAATTAAAAACACTCTGCGACTGATCCATTGCAAAAATGCCCATCAGCCTGTGTCTAACGAATTCGTGTGGCTCACCGTCTACCGTCGTGCCAGAGGCACCGCAAACGACTTGCACGGAGATGGACCGAGATCGACAGAATGTAAATGAAGATAATTGCGAAAAACAGTCCAACTCCAACAAAGTGTTTAAAAAATCAAC] [+] EMBL BM654351 [CCGCCCACGCGTCCGATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAATGAGCGAAACCCCCGGAGTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGGCTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGTTGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCTAACCATTGCACTGCTTCCGATTGCTCAAAAACTACAAAAGCGATCTAACTCGAACCAACTGCAAGGATATTCAAATAGTTCCTTTCGTTTTAAGAGAAGCTGTATTTATGTATATTTATTATTCACACTGTTTAAAAAAATGCATGCGCATATTGTATAAGTCGTCGTTAGCGTACGTCATATAAATTAAAAACACTCTGCGACTGATCCATTGCAAAAATGCCCATCAGCCTGTGTCTAACGAATTCGTGTGGCTCACCGTCTACCGTCGTGCCAGAGGCACCGCAAACGACTTGCACGGAGATGGACCGAGATCGACAGAATGTAAATGAAGATAATTGCGAAAAACAGTCCAACTCCAACAAAGTGTTTAAAAAATCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1450#0 ------------CCGAAAAGATTTGTAGTTGAAACT---GCCTAAAAATTGTTCCGGGAA 45 consensus_1450#1 CCGCCCACGCGTCCGATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGA 60 **** * ** * **** ** * ** ** * * consensus_1450#0 ATTACTTCGGATATACCGCCATCGCGTACATAGAACATCCACCGAATAGCGGCAGCAGCA 105 consensus_1450#1 AATGAG-CGAAACCCCCGGAGTCGTCGATATAGAACACCT------TAG--GCAAATGAG 111 * * ** * *** *** * ******** * *** *** * consensus_1450#0 GCAGCGATTCAAAGTGTTTGTGTGTGTGTGTGTATGTATGTGTGCGCGAA---GATTCGT 162 consensus_1450#1 CCATTCGTACGAAGAAGTTGTGTTTCGGTTGATATAAGTAAATGCGGAAATTGGCTGTGG 171 ** * * *** ****** * ** *** * **** ** * * * consensus_1450#0 CTTGCGGGCGTTTCTCTCTCTCCTCGGTAGATTTGATGGCGCGGGTACGGTTCCGTC-GC 221 consensus_1450#1 CTCACAAACGAAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAAGT 231 ** * ** * * * * **** * * ** * ***** * * consensus_1450#0 CAAGTGCAGTTTGCAGC-CATAGTTTCGTCCCTGCCAAAAGGAGTGTGAAAAGATCTTCT 280 consensus_1450#1 TGATCTTTATTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTAT---AGCGTAGGAC 288 * ** * ** ** * ** ** * * ** * * * consensus_1450#0 AGTAGAGTATCTCTTAACGGCGCACGACGGCGGTTGGTGGTGGTTGTCCATTTTGGGTTT 340 consensus_1450#1 AGATGACCATCTAACCATTGCAC-TGCTTCCGATTGCTCAAAAACTACAAAAGCGA---- 343 ** ** **** * ** * * ** *** * * * * consensus_1450#0 TTTTCGCTTTACTTCACGTGGACGATAATGCAATGAATCGGTGCTGTGCGATTTCAGCGG 400 consensus_1450#1 -TCTAACTCGAACCAACTGCAAGGATATTCAAATAGTTCCTTTCGTTTTAAGAGAAGCTG 402 * * ** * ** * **** * *** ** * * * * *** * consensus_1450#0 TATCATATCGGTATCAAGCATGAGCATAAAACATGAGCGTGAAGATCGGAAAACTGAAAT 460 consensus_1450#1 TATT-TATGTATATTTATTATTCACACTGTTTAAAAAAATGC--ATGCGCATATTGTATA 459 *** *** *** * ** ** * * ** ** * * * ** * consensus_1450#0 GAGCGAAACCCCCGGA-GTCGTCGATATAGAACACCTTAGGCAAATGAGCCATTCGTACG 519 consensus_1450#1 AGTCGTCGTTAGCGTACGTCATATAAATTAAAAACACTCTGCGACTGATCCAT---TGCA 516 ** ** * *** * * ** ** ** * ** * *** **** * * consensus_1450#0 AAGAAGTTGTGTTTCGGTTGATATA-AGTAAATGCGGAAATTGGCTGTGGCTCACAAACG 578 consensus_1450#1 AAAA---TGCCCATCAGCCTGTGTCTAACGAATTCGT--GTGGCTCACCGTCTACCGTCG 571 ** * ** ** * * * * *** ** * * * ** ** consensus_1450#0 AAACGAAGGATACACTGTAGCTGGCTGATTACAGGAATTGTTCCATAA-GTTGATCTTTA 637 consensus_1450#1 TGCCAGAGG---CACCGCAAACGACTTGC-ACGGAGATGGACCGAGATCGACAGAATGTA 627 * *** *** * * * ** ** * ** * * * * * * ** consensus_1450#0 TTCGGAGAACAAAATTAGGTGGCGATTATTCACCGTATAGCGTAGGACAGATGACCATCT 697 consensus_1450#1 AATGAAGATAATTGCGAAAAACAGTCCAACTCCAACAAAGTGTTTAAAAAATCAAC---- 683 * *** * * * * * * ** ** * * ** * * consensus_1450#0 AACCATTGCACTGC 711 consensus_1450#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||