These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [GAATNGCCCCCNGTTTTTTTTTTTTTTTTCTGTCNGCTCCTTTCTTTCATTCTGTACTCCCTATAGATGACATGATTATCAATCGTTTATCTCATAGTTTGAGCTCATTTTTTAAAAAAAATTTGCATTCCATCCCATCTCTTCAACAAAGTAGCACCAAATTTCCACCCCTGCCGCAGCGCGTAGATAGTGAAAATTGAACCTGTTTTAACTCCGAAATAGTAGGATACAAAAATCCAGCAAACTCTATCAACAGAGCCCGTTCCTGTTTCACCTGTTGTGGCATCGCCTCTTGTTACGTTAGAAGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGGTACTTGAACCTACTAAACAGGCGTCCCGGTCNTTGACAACACGGTTATCCCTAACCCGAGAGCCGCATTTATTTAAGCTTAAGGAAGGCTTTATGGTACAACTCACATCCAATGGGTCTATAAACAATTTCTACGGCGGNAAAAACCAATTCCAATTAGGGGGAACACAGGAAACCAATCCATCNCAACCAATGGGCTAAACCGGNNACGGGGGAAAACCTCATGGGTTACCTTTCCCAAAATCATCTATTGGGACACGGCCCAAAGCAATGCGAGNACACTT] [+] EMBL AL692305 [GAATNGCCCCCNGTTTTTTTTTTTTTTTTCTGTCNGCTCCTTTCTTTCATTCTGTACTCCCTATAGATGACATGATTATCAATCGTTTATCTCATAGTTTGAGCTCATTTTTTAAAAAAAATTTGCATTCCATCCCATCTCTTCAACAAAGTAGCACCAAATTTCCACCCCTGCCGCAGCGCGTAGATAGTGAAAATTGAACCTGTTTTAACTCCGAAATAGTAGGATACAAAAATCCAGCAAACTCTATCAACAGAGCCCGTTCCTGTTTCACCTGTTGTGGCATCGCCTCTTGTTACGTTAGAAGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGGTACTTGAACCTACTAAACAGGCGTCCCGGTCNTTGACAACACGGTTATCCCTAACCCGAGAGCCGCATTTATTTAAGCTTAAGGAAGGCTTTATGGTACAACTCACATCCAATGGGTCTATAAACAATTTCTACGGCGGNAAAAACCAATTCCAATTAGGGGGAACACAGGAAACCAATCCATCNCAACCAATGGGCTAAACCGGNNACGGGGGAAAACCTCATGGGTTACCTTTCCCAAAATCATCTATTGGGACACGGCCCAAAGCAATGCGAGNACACTT] consensusID : consensus_1460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCGGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGTACTTGAACCTACTAAACAGCGTCCCGTTTTGAAACACGTTTCCTACCGAGAGCGCATTATTTATTAGGAGCTTTGTAAACTCACTCATGTTTAACATTTAGGAACATCATGGAAGACACACACAGCACGAGGAACTTGTCTCAATTTGAGCAGAGAAATGAAGTCAAAGTGAAGATAGTAGAATAGTAGTGGCGGGGGGCGAGATGGCTGTAAGATATCAATTAGAAATGCATTGCGTTCGTTTGCTCAGATATTTCTTGTCCATTTCTAATACCCAACCAGCGCCACCAGTGGGCGTACATGTGTGTGTGTGTATGTCGGGTTGCATAGACATTTGCTCAAAACTATAGTATTGTAGTGGAATTCTGACCCAACCCAAGGTTTCCAGTTGTGTCACCCAGTGTCACCAGAAGCCCCCAAACAAGGTCCACACAACTTCCGGTGTATACTATTCCTTCCCAAACGATAGTCTCCTCCTGCGAGGAGGGGAAAAAACACAACAACAGTACAGGGGGTTTCCAGGTGTGTTCTCATAGTTGTGGGACACTTCCTTGACTCTTTCT] [+] EMBL BM617122 [CCGGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGTACTTGAACCTACTAAACAGCGTCCCGTTTTGAAACACGTTTCCTACCGAGAGCGCATTATTTATTAGGAGCTTTGTAAACTCACTCATGTTTAACATTTAGGAACATCATGGAAGACACACACAGCACGAGGAACTTGTCTCAATTTGAGCAGAGAAATGAAGTCAAAGTGAAGATAGTAGAATAGTAGTGGCGGGGGGCGAGATGGCTGTAAGATATCAATTAGAAATGCATTGCGTTCGTTTGCTCAGATATTTCTTGTCCATTTCTAATACCCAACCAGCGCCACCAGTGGGCGTACATGTGTGTGTGTGTATGTCGGGTTGCATAGACATTTGCTCAAAACTATAGTATTGTAGTGGAATTCTGACCCAACCCAAGGTTTCCAGTTGTGTCACCCAGTGTCACCAGAAGCCCCCAAACAAGGTCCACACAACTTCCGGTGTATACTATTCCTTCCCAAACGATAGTCTCCTCCTGCGAGGAGGGGAAAAAACACAACAACAGTACAGGGGGTTTCCAGGTGTGTTCTCATAGTTGTGGGACACTTCCTTGACTCTTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1460#0 GAATNGCCCCCNGTTTTTTTTTTTTTTTTCTGTCNGCTCCTTTCTTTCATTCTGTACTC- 59 consensus_1460#1 ---------CCGGTCAGTGGTATGGTAGCGCGA-AACCCGTTAATGCAACTTTGTACTTG 50 ** ** * * * * * * * ** * * * ****** consensus_1460#0 --CCTA-TAGATGACATGATTATCAATCGTTTATCTCATAGTTTGAGCTCATTTTTTAAA 116 consensus_1460#1 AACCTACTAAACAGCGTCCCGTTTTGAAACACGTTTCCTACCGAGAGCGCATTATTTATT 110 **** ** * * * * * ** ** **** **** **** consensus_1460#0 AAAAA-TTTGCATTCCATCCCATCTCTTCAACAAAGTAGCACCAAATTTCCACCCCTGCC 175 consensus_1460#1 AGGAGCTTTGTAAACTCACTCATGTTTAACATTTAGGAACATCA---------------T 155 * * **** * * * *** * * * ** * ** ** consensus_1460#0 GCAGCGCGTAGATAGTGAAAATTGAACCTGTTTTAACTCCGAAATAGTAGGATACAAAAA 235 consensus_1460#1 GGAAGACACACACAGCACGAG--GAACTTGTCTCAATTTGAGCAGAGAAATGAAGTCAAA 213 * * * * * ** * **** *** * ** * * ** * * *** consensus_1460#0 TCCAGCAAACTCTATCAACAGAGCCCGTTCCTGTTTCACCTGTTGTGGCATCGCCTCTTG 295 consensus_1460#1 GTGAAGATAGTAGAATAGTAGTGGCGGGGGGCGAGATGGCTGTAA-GATATCAATTAGAA 272 * * * * * * ** * * * * **** * *** * consensus_1460#0 TTACGTTAGAAGTCAGTGGTATGGTAGCGCGAAACCCGTTAATGCAACTTTGGTACTTGA 355 consensus_1460#1 ATGCATTGC---------GTTCGTTTGCTCAGATATTTCTTGTCCATTTCTAATACCC-A 322 * * ** ** * * ** * * * * ** * * *** * consensus_1460#0 ACCTACTAAACAGGCGTCCCGGTCNTTGACAACACGGTTATCCCTAACCCGAGAGCCGCA 415 consensus_1460#1 ACCAGCGCCACCAGTGGGC--GTACATGTGTGTGTGTGTATGTCGGGTTGCATAG--ACA 378 *** * ** * * * ** ** * *** * * ** ** consensus_1460#0 TTTATTTAAGCTTAAGGAAGGCTTTATGGTACAACTCACATCCAAT---GGGTCTATAAA 472 consensus_1460#1 TTTGCTCAAAACTATAGTA----TTGTAGTGGAATTCTGACCCAACCCAAGGTTTCCAGT 434 *** * ** ** * * ** * ** ** ** * **** *** * * consensus_1460#0 CAATTTCTACGGCGGNAAAAACCAATTCCAATTAGGGGGAACACA---------GGAAAC 523 consensus_1460#1 TGTGTCACCCAGTGTCACCAGAAGCCCCCAAACAAGGTCCACACAACTTCCGGTGTATAC 494 * * * * * * **** * ** ***** * * ** consensus_1460#0 CAATCCATCNCAACCAATGGGCTAAACCGGNNACGGGGGAAAACCTCATGGGTTACCTTT 583 consensus_1460#1 TATTCCTTCCCAAACGATAGTCTCCTCCTGCGAGGAGGGGAAAAAACACAA-CAACAGTA 553 * *** ** *** * ** * ** ** * * * *** *** ** ** * consensus_1460#0 CCCAAAATCATCTATTGGGA---CACGGCC-CAAAGCAATGCGAGNACACTT--- 631 consensus_1460#1 CAGGGGGTTTCCAGGTGTGTTCTCATAGTTGTGGGACACTTCCTTGACTCTTTCT 608 * * * ** * ** * ** * * ** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||