cluster # 1463

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1463 cluster # 1463 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1463#0 length = 675 sequences # 1

consensus_1463#1 length = 462 sequences # 1

consensusID : consensus_1463#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [GCAGAATCCCCGCGTTTATCTCTATGTTGCTACTTATAAGATCTAACAATAAAGAAGCTTGTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTTATAATCACAATACATCCGTTATTAGGGAACTAAATACAACAAGTGCGTAATAAAAAGGGGCACAAATGTGGTTTTCCCCTGGCCAATCCTTGGTTCGAAAGCCAAAGTCAGCAAAACCCACATTCTNTCTTATGTTCATCCCCCACGTTTTATCATTTTCCCCACCGGTTNTNCNAAAGGCCCAAAGCAAANGACGGTCTCCACAGTGGACTAACACACAACACACGAGCAGGACAAACCAAAGTTAATTGTGNTTGNATTCCTGGATAGNGCTACAACCATGCGGGTATTACACACAAATTAACCAGCACGAGACAACTTCAAATTTAAAGCTTNGGCTTCAAATTTGGACNCCACGGGTANCTTAAACCACAATTAAAGGTTTGGTCATAGCATANACATCAGGACANACCACAACAAAACACCTGGNAT]

[+] EMBL AL692314             [GCAGAATCCCCGCGTTTATCTCTATGTTGCTACTTATAAGATCTAACAATAAAGAAGCTTGTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTTATAATCACAATACATCCGTTATTAGGGAACTAAATACAACAAGTGCGTAATAAAAAGGGGCACAAATGTGGTTTTCCCCTGGCCAATCCTTGGTTCGAAAGCCAAAGTCAGCAAAACCCACATTCTNTCTTATGTTCATCCCCCACGTTTTATCATTTTCCCCACCGGTTNTNCNAAAGGCCCAAAGCAAANGACGGTCTCCACAGTGGACTAACACACAACACACGAGCAGGACAAACCAAAGTTAATTGTGNTTGNATTCCTGGATAGNGCTACAACCATGCGGGTATTACACACAAATTAACCAGCACGAGACAACTTCAAATTTAAAGCTTNGGCTTCAAATTTGGACNCCACGGGTANCTTAAACCACAATTAAAGGTTTGGTCATAGCATANACATCAGGACANACCACAACAAAACACCTGGNAT]




>consensus_1463#0
GCAGAATCCCCGCGTTTATCTCTATGTTGCTACTTATAAGATCTAACAATAAAGAAGCTT
GTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCA
TCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAAC
GAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCC
CTTATAATCACAATACATCCGTTATTAGGGAACTAAATACAACAAGTGCGTAATAAAAAG
GGGCACAAATGTGGTTTTCCCCTGGCCAATCCTTGGTTCGAAAGCCAAAGTCAGCAAAAC
CCACATTCTNTCTTATGTTCATCCCCCACGTTTTATCATTTTCCCCACCGGTTNTNCNAA
AGGCCCAAAGCAAANGACGGTCTCCACAGTGGACTAACACACAACACACGAGCAGGACAA
ACCAAAGTTAATTGTGNTTGNATTCCTGGATAGNGCTACAACCATGCGGGTATTACACAC
AAATTAACCAGCACGAGACAACTTCAAATTTAAAGCTTNGGCTTCAAATTTGGACNCCAC
GGGTANCTTAAACCACAATTAAAGGTTTGGTCATAGCATANACATCAGGACANACCACAA
CAAAACACCTGGNAT

consensusID : consensus_1463#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [CCGCTGAAACATATTTTCCTATGGTAACTGTTTGTGTTTTGACCTGTACATCACGATTATTAATCATTTATAGCATTTAAATCTTTCTTCACTGTACCTCTCCACGACTTATATTACTTTTAGTCTTACTATTTTCCTCTATGTTGCTACTTATAAGATGTAACAATAAAGAAGCTTGTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTTATAATCACAATACATCCTTTTTAGGGAATAATAAAAATGCTAATAAAAAGGGCAAATTTGTTTCCTTGCCATCTTGTTCGAACCAAATCACCAAACCACCCT]

[+] EMBL BM618279             [CCGCTGAAACATATTTTCCTATGGTAACTGTTTGTGTTTTGACCTGTACATCACGATTATTAATCATTTATAGCATTTAAATCTTTCTTCACTGTACCTCTCCACGACTTATATTACTTTTAGTCTTACTATTTTCCTCTATGTTGCTACTTATAAGATGTAACAATAAAGAAGCTTGTGAAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCTGTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAGAGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTTATAATCACAATACATCCTTTTTAGGGAATAATAAAAATGCTAATAAAAAGGGCAAATTTGTTTCCTTGCCATCTTGTTCGAACCAAATCACCAAACCACCCT]




>consensus_1463#1
CCGCTGAAACATATTTTCCTATGGTAACTGTTTGTGTTTTGACCTGTACATCACGATTAT
TAATCATTTATAGCATTTAAATCTTTCTTCACTGTACCTCTCCACGACTTATATTACTTT
TAGTCTTACTATTTTCCTCTATGTTGCTACTTATAAGATGTAACAATAAAGAAGCTTGTG
AAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCT
GTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAG
AGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTT
ATAATCACAATACATCCTTTTTAGGGAATAATAAAAATGCTAATAAAAAGGGCAAATTTG
TTTCCTTGCCATCTTGTTCGAACCAAATCACCAAACCACCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1463#0      ------------------------------------------------------------
consensus_1463#1      CCGCTGAAACATATTTTCCTATGGTAACTGTTTGTGTTTTGACCTGTACATCACGATTAT 60
                                                                                  

consensus_1463#0      ---------------------------------------------------------GCA 3
consensus_1463#1      TAATCATTTATAGCATTTAAATCTTTCTTCACTGTACCTCTCCACGACTTATATTACTTT 120
                                                                                  

consensus_1463#0      GAATCCCCGCGTTTATCTCTATGTTGCTACTTATAAGATCTAACAATAAAGAAGCTTGTG 63
consensus_1463#1      TAGTCTTACTATTTTCCTCTATGTTGCTACTTATAAGATGTAACAATAAAGAAGCTTGTG 180
                       * **      ***  *********************** ********************

consensus_1463#0      AAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCT 123
consensus_1463#1      AAAACTAGAACTATAGAAAAGGCAAATGAAAGGAGAGACATAGAGAGAACAAGTGCATCT 240
                      ************************************************************

consensus_1463#0      GTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAG 183
consensus_1463#1      GTATAAAGCTCCATCCAAAAAATACAATTCATTACACTAACTCGCTGCAAAGCAAACGAG 300
                      ************************************************************

consensus_1463#0      AGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTT 243
consensus_1463#1      AGCATAACAACAGATTCGATGGTAACCGTTGATAGAACAATTTCACAAGAACCGTCCCTT 360
                      ************************************************************

consensus_1463#0      ATAATCACAATACATCCGTTATTAGGGAACTAAATACAACAAGTGCGTAATAAAAAGGGG 303
consensus_1463#1      ATAATCACAATACATCC-TTTTTAGGGAA-----TAATAAAAATGC-TAATAAAAAGGG- 412
                      ***************** ** ********     **  * ** *** ************ 

consensus_1463#0      CACAAATGTGGTTTTCCCCTGGCCAATCCTTGGTTCGAAAGCCAAAGTCAGCAAAACCCA 363
consensus_1463#1      --CAAAT----TTGTTTCCTTGCCA---TCTTGTTCGAA---CCAAATCACCAAA--CCA 458
                        *****    ** *  *** ****     * *******   * ** *** ****  ***

consensus_1463#0      CATTCTNTCTTATGTTCATCCCCCACGTTTTATCATTTTCCCCACCGGTTNTNCNAAAGG 423
consensus_1463#1      CCCT-------------------------------------------------------- 462
                      *  *                                                        

consensus_1463#0      CCCAAAGCAAANGACGGTCTCCACAGTGGACTAACACACAACACACGAGCAGGACAAACC 483
consensus_1463#1      ------------------------------------------------------------
                                                                                  

consensus_1463#0      AAAGTTAATTGTGNTTGNATTCCTGGATAGNGCTACAACCATGCGGGTATTACACACAAA 543
consensus_1463#1      ------------------------------------------------------------
                                                                                  

consensus_1463#0      TTAACCAGCACGAGACAACTTCAAATTTAAAGCTTNGGCTTCAAATTTGGACNCCACGGG 603
consensus_1463#1      ------------------------------------------------------------
                                                                                  

consensus_1463#0      TANCTTAAACCACAATTAAAGGTTTGGTCATAGCATANACATCAGGACANACCACAACAA 663
consensus_1463#1      ------------------------------------------------------------
                                                                                  

consensus_1463#0      AACACCTGGNAT 675
consensus_1463#1      ------------