cluster # 1466

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Anopheles gambiae
cluster # 1466 cluster # 1466 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1466#0 length = 634 sequences # 1

consensus_1466#1 length = 604 sequences # 1

consensusID : consensus_1466#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [CCGCCGAGAGAGAGCAGCAAGAAAAATGTGTGTGTGTGTGTAGTATGAAAATATAAGAATCTCAAATTCGGTGTAGCCTGTTTGCTGCCATAATTTGCTCCATTTTCAATGCAACGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGATCGTGGATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGTGCGTGTCTGTTTGCTCAAGAATGTTAATTAGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGCTGAATACGCAAGAAGTTTTATCGAATTATAATAATTAGTGGTTTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCCCATCGTGTCGTCTTCGAATGGACGGGTACAATGC]

[+] EMBL BM630551             [CCGCCGAGAGAGAGCAGCAAGAAAAATGTGTGTGTGTGTGTAGTATGAAAATATAAGAATCTCAAATTCGGTGTAGCCTGTTTGCTGCCATAATTTGCTCCATTTTCAATGCAACGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGATCGTGGATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGTGCGTGTCTGTTTGCTCAAGAATGTTAATTAGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGCTGAATACGCAAGAAGTTTTATCGAATTATAATAATTAGTGGTTTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCCCATCGTGTCGTCTTCGAATGGACGGGTACAATGC]




>consensus_1466#0
CCGCCGAGAGAGAGCAGCAAGAAAAATGTGTGTGTGTGTGTAGTATGAAAATATAAGAAT
CTCAAATTCGGTGTAGCCTGTTTGCTGCCATAATTTGCTCCATTTTCAATGCAACGCCGA
CGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGAT
TCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGA
TCGTGGATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGTGCGTGTCTGTTTGCT
CAAGAATGTTAATTAGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGC
TGAATACGCAAGAAGTTTTATCGAATTATAATAATTAGTGGTTTGATCGCACCGCCGCGA
CCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTC
CCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCT
GTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCC
CATCGTGTCGTCTTCGAATGGACGGGTACAATGC

consensusID : consensus_1466#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [CCGCGGACGCGTGGGGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGATCGTGCATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGCGTGTCTGTTTGCTCAAGAATGTTAATTTGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGCTGAATACGCATGAAGTTTTATCGAATTATAATAATTAGTGATTTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCCTAACGTGTCGTCTTCGAATGGACGGGTACAATGCTCAGTTTACATCAGTCACCACACCGTAGCAAATCCTCTTACCGGCGTGGTGTGGTAGTAGGTAGCGTACACG]

[+] EMBL BM609967             [CCGCGGACGCGTGGGGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGATCGTGCATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGCGTGTCTGTTTGCTCAAGAATGTTAATTTGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGCTGAATACGCATGAAGTTTTATCGAATTATAATAATTAGTGATTTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCCTAACGTGTCGTCTTCGAATGGACGGGTACAATGCTCAGTTTACATCAGTCACCACACCGTAGCAAATCCTCTTACCGGCGTGGTGTGGTAGTAGGTAGCGTACACG]




>consensus_1466#1
CCGCGGACGCGTGGGGCCGACGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATT
CCAAAAAAAGACCAAACGATTCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCC
GCAATATACGTAGCATTTGATCGTGCATAGATCGTGACATACCTTCCGTGTGCGTGCGTG
CGTGCGTGTCTGTTTGCTCAAGAATGTTAATTTGAAAAGGGAAGAGAGAAAGAGAAAAAA
AGCGAGACATTAAAATGCTGAATACGCATGAAGTTTTATCGAATTATAATAATTAGTGAT
TTGATCGCACCGCCGCGACCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGC
ATACTGCCCTTCCCCTTCCCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAG
TGGGTTTTAAGTGGTCCTGTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTT
ACGAATGCTCCGTGCCCCTAACGTGTCGTCTTCGAATGGACGGGTACAATGCTCAGTTTA
CATCAGTCACCACACCGTAGCAAATCCTCTTACCGGCGTGGTGTGGTAGTAGGTAGCGTA
CACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1466#0      CCGCCGAGAGAGAGCAGCAAGAAAAATGTGTGTGTGTGTGTAGTATGAAAATATAAGAAT 60
consensus_1466#1      ------------------------------------------------------------
                                                                                  

consensus_1466#0      CTCAAATTCGGTGTAGCCTGTTTGCTGCCATAATTTGCTCCATTTTCAATGCAACGCCGA 120
consensus_1466#1      ---------------------------------------CCGCGGACG-CGTGGGGCCGA 20
                                                             **     *   *    *****

consensus_1466#0      CGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGAT 180
consensus_1466#1      CGAGTGTACAGGGGTTTGCTGCGTTGCTACAATTTTCATTCCAAAAAAAGACCAAACGAT 80
                      ************************************************************

consensus_1466#0      TCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGA 240
consensus_1466#1      TCTTCGAATGAGATCATTACAAACGAAACAACCATGCGCCGCAATATACGTAGCATTTGA 140
                      ************************************************************

consensus_1466#0      TCGTGGATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTGTGCGTGTCTGTTTGCT 300
consensus_1466#1      TCGTGCATAGATCGTGACATACCTTCCGTGTGCGTGCGTGCGTG--CGTGTCTGTTTGCT 198
                      ***** **************************************  **************

consensus_1466#0      CAAGAATGTTAATTAGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGC 360
consensus_1466#1      CAAGAATGTTAATTTGAAAAGGGAAGAGAGAAAGAGAAAAAAAGCGAGACATTAAAATGC 258
                      ************** *********************************************

consensus_1466#0      TGAATACGCAAGAAGTTTTATCGAATTATAATAATTAGTGGTTTGATCGCACCGCCGCGA 420
consensus_1466#1      TGAATACGCATGAAGTTTTATCGAATTATAATAATTAGTGATTTGATCGCACCGCCGCGA 318
                      ********** ***************************** *******************

consensus_1466#0      CCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTC 480
consensus_1466#1      CCCGATCAATCAGTCCGCTGTCAAAGGGGACAAAGCAACCGCATACTGCCCTTCCCCTTC 378
                      ************************************************************

consensus_1466#0      CCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCT 540
consensus_1466#1      CCCTTTTATTGCGATTGAATATTCAAAATATTCTCTGTTTAGTGGGTTTTAAGTGGTCCT 438
                      ************************************************************

consensus_1466#0      GTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCC 600
consensus_1466#1      GTGTGTGCGTGCGTCTTTTTTACCGCCGTCTTTTTGCTATTTACGAATGCTCCGTGCCCC 498
                      ************************************************************

consensus_1466#0      CATCGTGTCGTCTTCGAATGGACGGGTACAATGC-------------------------- 634
consensus_1466#1      TAACGTGTCGTCTTCGAATGGACGGGTACAATGCTCAGTTTACATCAGTCACCACACCGT 558
                       * *******************************                          

consensus_1466#0      ----------------------------------------------
consensus_1466#1      AGCAAATCCTCTTACCGGCGTGGTGTGGTAGTAGGTAGCGTACACG 604