cluster # 1472

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Anopheles gambiae
cluster # 1472 cluster # 1472 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1472#0 length = 884 sequences # 1

consensus_1472#1 length = 602 sequences # 1

consensusID : consensus_1472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 884
fasta sequence

                              [GATCCCCGCGGTTAAACACATTTTGAATTGAATCCCATACAAAGAGGATTCTTAATTTGTTTATTACGGTGCGCGTATGGTGCTAGCACCTGTCCGTCCAGAATCTAGTGGCTTGTATGGTTTGGAGTAGTATATCATGACGCCGATTGACCGGCAATGCCTTGGAATGGGCTCGGATCGGTAGGTTCATAGTTTGGTCGCAGTGCCTTCCGTGTATTTAGTCTCGTCACAGCGGTAGCCCGGAGCAACTAAGTCCAAGATAAACTCTTACCCGGGTGTGGACTGCTACGCTAAGTTCTTATTAATTATATNTTATTGGCGTANTAGCCAANGCGATCATAGTCAGGCTATNTCCAGGCACTTGNGTACCACGTAGACGGAGACTGGGTGGCTAATCCCTTGCTACGCACGGCGGTTCATACGCGATTCAGAAACCANGAAGGGCATGCAGNATGTGCGGAATGATGGCGGTGCCGCTGGCCCGCTCCTATCCAGTGTNGCAAATTGCATACAGCATACTAGTCTACTGCCCGGTGCCATACGCAGACANGCCAGGGGNAGGATGAACATCCACAGANNAAAACNANAAACACANAACATCTAGAACGACGCGCGCCGCAAAGCTATATTACCCTATTAACGAATAGAAGGGTACAAACTTTTATAAGGANCTTTAGNGGCAATNGGGACCGGTCAGGATNTANAACAAACGGTCCGTGCACNTTGGGNGAANANAACNCTTGNGCGTTTAACCCCAAATTTAAATACGAGCCTTAGCCAGAACATCCCCACCNTTATCGAGCACGATGGACGGTAAATTAACGCCACAAACGGCCCGNNGACACCGNTATCGCCTTCCCCNACAGTGGAGCANACTTGAATTN]

[+] EMBL AL692340             [GATCCCCGCGGTTAAACACATTTTGAATTGAATCCCATACAAAGAGGATTCTTAATTTGTTTATTACGGTGCGCGTATGGTGCTAGCACCTGTCCGTCCAGAATCTAGTGGCTTGTATGGTTTGGAGTAGTATATCATGACGCCGATTGACCGGCAATGCCTTGGAATGGGCTCGGATCGGTAGGTTCATAGTTTGGTCGCAGTGCCTTCCGTGTATTTAGTCTCGTCACAGCGGTAGCCCGGAGCAACTAAGTCCAAGATAAACTCTTACCCGGGTGTGGACTGCTACGCTAAGTTCTTATTAATTATATNTTATTGGCGTANTAGCCAANGCGATCATAGTCAGGCTATNTCCAGGCACTTGNGTACCACGTAGACGGAGACTGGGTGGCTAATCCCTTGCTACGCACGGCGGTTCATACGCGATTCAGAAACCANGAAGGGCATGCAGNATGTGCGGAATGATGGCGGTGCCGCTGGCCCGCTCCTATCCAGTGTNGCAAATTGCATACAGCATACTAGTCTACTGCCCGGTGCCATACGCAGACANGCCAGGGGNAGGATGAACATCCACAGANNAAAACNANAAACACANAACATCTAGAACGACGCGCGCCGCAAAGCTATATTACCCTATTAACGAATAGAAGGGTACAAACTTTTATAAGGANCTTTAGNGGCAATNGGGACCGGTCAGGATNTANAACAAACGGTCCGTGCACNTTGGGNGAANANAACNCTTGNGCGTTTAACCCCAAATTTAAATACGAGCCTTAGCCAGAACATCCCCACCNTTATCGAGCACGATGGACGGTAAATTAACGCCACAAACGGCCCGNNGACACCGNTATCGCCTTCCCCNACAGTGGAGCANACTTGAATTN]




>consensus_1472#0
GATCCCCGCGGTTAAACACATTTTGAATTGAATCCCATACAAAGAGGATTCTTAATTTGT
TTATTACGGTGCGCGTATGGTGCTAGCACCTGTCCGTCCAGAATCTAGTGGCTTGTATGG
TTTGGAGTAGTATATCATGACGCCGATTGACCGGCAATGCCTTGGAATGGGCTCGGATCG
GTAGGTTCATAGTTTGGTCGCAGTGCCTTCCGTGTATTTAGTCTCGTCACAGCGGTAGCC
CGGAGCAACTAAGTCCAAGATAAACTCTTACCCGGGTGTGGACTGCTACGCTAAGTTCTT
ATTAATTATATNTTATTGGCGTANTAGCCAANGCGATCATAGTCAGGCTATNTCCAGGCA
CTTGNGTACCACGTAGACGGAGACTGGGTGGCTAATCCCTTGCTACGCACGGCGGTTCAT
ACGCGATTCAGAAACCANGAAGGGCATGCAGNATGTGCGGAATGATGGCGGTGCCGCTGG
CCCGCTCCTATCCAGTGTNGCAAATTGCATACAGCATACTAGTCTACTGCCCGGTGCCAT
ACGCAGACANGCCAGGGGNAGGATGAACATCCACAGANNAAAACNANAAACACANAACAT
CTAGAACGACGCGCGCCGCAAAGCTATATTACCCTATTAACGAATAGAAGGGTACAAACT
TTTATAAGGANCTTTAGNGGCAATNGGGACCGGTCAGGATNTANAACAAACGGTCCGTGC
ACNTTGGGNGAANANAACNCTTGNGCGTTTAACCCCAAATTTAAATACGAGCCTTAGCCA
GAACATCCCCACCNTTATCGAGCACGATGGACGGTAAATTAACGCCACAAACGGCCCGNN
GACACCGNTATCGCCTTCCCCNACAGTGGAGCANACTTGAATTN

consensusID : consensus_1472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [AAAGAGAATTCTGGATTTGTTTATTACGGTGCGCGTATGGTACTGCACCTGTCCGTCCAGAATCTAGCGGCTTGATGGCTTGGAGTCGTTATCATGATGCCGATTGACCGGCACTGCCTTGGAATGGGTTCGGATCGGTAGGTTCATGTTTTGGTCGATTGCATTCCGTTGATATGTCGCGCCACAGCGGGACACCCGGCAGTAACAAAGTCATGACAAACTTTTCCCCGGGTGTGGACAGCTATGCTAAGTTTTTCTTCTTCTTATTATTATTATTGGCATAATAGCAAACCCGATCATGCCGGCCTTTTCAGGACTTGAGTACCACGTAGCCGGATAGTCAGCCCTTGCTACGGCGGAGGTTCATACGCGGTTAGAACCCACGACGGGCATGCTGTTAAGATGTGCGGAATGATGCGGCGGATCCCGCGACAAGGGCCCCCGGAAAGATGGTCGTTGGGGCCCCGTGGCGGGAGAACCATTTGCCTCTAACCGCCTAGGGCCCCCGATTCCTCTATTCCACTACCAAGAACACGTTCCTTTCTTTGACCGATGGATCATAACATTCCGGAAGAAAACACATTTGGTGACAGTTTTGCACA]

[-] EMBL BX626858             [AAAGAGAATTCTGGATTTGTTTATTACGGTGCGCGTATGGTACTGCACCTGTCCGTCCAGAATCTAGCGGCTTGATGGCTTGGAGTCGTTATCATGATGCCGATTGACCGGCACTGCCTTGGAATGGGTTCGGATCGGTAGGTTCATGTTTTGGTCGATTGCATTCCGTTGATATGTCGCGCCACAGCGGGACACCCGGCAGTAACAAAGTCATGACAAACTTTTCCCCGGGTGTGGACAGCTATGCTAAGTTTTTCTTCTTCTTATTATTATTATTGGCATAATAGCAAACCCGATCATGCCGGCCTTTTCAGGACTTGAGTACCACGTAGCCGGATAGTCAGCCCTTGCTACGGCGGAGGTTCATACGCGGTTAGAACCCACGACGGGCATGCTGTTAAGATGTGCGGAATGATGCGGCGGATCCCGCGACAAGGGCCCCCGGAAAGATGGTCGTTGGGGCCCCGTGGCGGGAGAACCATTTGCCTCTAACCGCCTAGGGCCCCCGATTCCTCTATTCCACTACCAAGAACACGTTCCTTTCTTTGACCGATGGATCATAACATTCCGGAAGAAAACACATTTGGTGACAGTTTTGCACA]




>consensus_1472#1
AAAGAGAATTCTGGATTTGTTTATTACGGTGCGCGTATGGTACTGCACCTGTCCGTCCAG
AATCTAGCGGCTTGATGGCTTGGAGTCGTTATCATGATGCCGATTGACCGGCACTGCCTT
GGAATGGGTTCGGATCGGTAGGTTCATGTTTTGGTCGATTGCATTCCGTTGATATGTCGC
GCCACAGCGGGACACCCGGCAGTAACAAAGTCATGACAAACTTTTCCCCGGGTGTGGACA
GCTATGCTAAGTTTTTCTTCTTCTTATTATTATTATTGGCATAATAGCAAACCCGATCAT
GCCGGCCTTTTCAGGACTTGAGTACCACGTAGCCGGATAGTCAGCCCTTGCTACGGCGGA
GGTTCATACGCGGTTAGAACCCACGACGGGCATGCTGTTAAGATGTGCGGAATGATGCGG
CGGATCCCGCGACAAGGGCCCCCGGAAAGATGGTCGTTGGGGCCCCGTGGCGGGAGAACC
ATTTGCCTCTAACCGCCTAGGGCCCCCGATTCCTCTATTCCACTACCAAGAACACGTTCC
TTTCTTTGACCGATGGATCATAACATTCCGGAAGAAAACACATTTGGTGACAGTTTTGCA
CA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1472#0      GATCCCCGCGGTTAAACACATTTTGAATTGAATCCCATACAAAGAGGATTCTTAATTTGT 60
consensus_1472#1      ----------------------------------------AAAGAGAATTCTGGATTTGT 20
                                                              ****** *****  ******

consensus_1472#0      TTATTACGGTGCGCGTATGGTGCTAGCACCTGTCCGTCCAGAATCTAGTGGCTTGTATGG 120
consensus_1472#1      TTATTACGGTGCGCGTATGGTACT-GCACCTGTCCGTCCAGAATCTAGCGGCTTG-ATGG 78
                      ********************* ** *********************** ****** ****

consensus_1472#0      TTTGGAGTAGTATATCATGACGCCGATTGACCGGCAATGCCTTGGAATGGGCTCGGATCG 180
consensus_1472#1      CTTGGAGTCGT-TATCATGATGCCGATTGACCGGCACTGCCTTGGAATGGGTTCGGATCG 137
                       ******* ** ******** *************** ************** ********

consensus_1472#0      GTAGGTTCATAGTTTGGTCGCAGTGCCTTCCGTGTATTTAGTCTCGTCACAGCGGTA-GC 239
consensus_1472#1      GTAGGTTCATGTTTTGGTCG-ATTGCATTCCGTTGATAT-GTCGCGCCACAGCGGGACAC 195
                      **********  ******** * *** ******  ** * *** ** ******** *  *

consensus_1472#0      CCGG-AGCAACTAAGTCCAAGATAAACTCTTACCCGGGTGTGGACTGCTACGCTAAGTTC 298
consensus_1472#1      CCGGCAGTAACAAAGTC-ATGACAAACTTTTCCCCGGGTGTGGACAGCTATGCTAAGTTT 254
                      **** ** *** ***** * ** ***** ** ************* **** ******** 

consensus_1472#0      TTATTAATTATATN----TTATTGGCGTANTAGCCAANGCGATCATAGTCAGGCTATNTC 354
consensus_1472#1      TTCTTCTTCTTATTATTATTATTGGCATAATAGCAAACCCGATCATG--CCGGCC-TTTT 311
                      ** **  *  ***     ******** ** **** **  *******   * ***  * * 

consensus_1472#0      CAGGCACTTGNGTACCACGTAGACGGAGACTGGGTGGCTAATCCCTTGCTACGCACGGCG 414
consensus_1472#1      CAGG-ACTTGAGTACCACGTAGCCGGATAGTCAG--------CCCTTGCTACG-GCGGAG 361
                      **** ***** *********** **** * *  *        ***********  *** *

consensus_1472#0      GTTCATACGCGATTCAGAAACCANGAAGGGCATGC----AGNATGTGCGGAATGATG--G 468
consensus_1472#1      GTTCATACGCGGTT-AGAACCCACGACGGGCATGCTGTTAAGATGTGCGGAATGATGCGG 420
                      *********** ** **** *** ** ********    *  ***************  *

consensus_1472#0      CGGTGCCGCTGGCCCGCTCCTATCCAGTGTNGCAAATTGCATACAGCATACTAGTCTACT 528
consensus_1472#1      CGGATCCCGCGACAAGGGCCCCCGGAAAGATGGTCGTTGGGGCCCCGTGGCGGGAGAACC 480
                      ***  **   * *  *  **     *  *  *    ***    *      *  *   ** 

consensus_1472#0      GCCCGGTGCCATACGCAGACANGCCAGGGGNAGGATGAACATCCACAGANNAAAACNANA 588
consensus_1472#1      ATTTGCCTCTAACCGC-------CTAGGGCCC---CCGATTCCTCTATTCCACTACCAAG 530
                          *   * *  ***       * ****         *   *   *    *  ** *  

consensus_1472#0      AACACANAACATCTAGAACGACGCGCGCCGCAAAGCTATATTACCCTATTAACGAATAGA 648
consensus_1472#1      AACACGTTCCTTT--------CTTTGACCGATGGATCATAACATTCCGGAAGAAAACACA 582
                      *****    * *         *     ***       ***  *  *    *   ** * *

consensus_1472#0      AGGGTACAAACTTTTATAAGGANCTTTAGNGGCAATNGGGACCGGTCAGGATNTANAACA 708
consensus_1472#1      TTTGGTGACAGTTTTGCACA---------------------------------------- 602
                         *   * * ****  *                                          

consensus_1472#0      AACGGTCCGTGCACNTTGGGNGAANANAACNCTTGNGCGTTTAACCCCAAATTTAAATAC 768
consensus_1472#1      ------------------------------------------------------------
                                                                                  

consensus_1472#0      GAGCCTTAGCCAGAACATCCCCACCNTTATCGAGCACGATGGACGGTAAATTAACGCCAC 828
consensus_1472#1      ------------------------------------------------------------
                                                                                  

consensus_1472#0      AAACGGCCCGNNGACACCGNTATCGCCTTCCCCNACAGTGGAGCANACTTGAATTN 884
consensus_1472#1      --------------------------------------------------------