cluster # 1475

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Anopheles gambiae
cluster # 1475 cluster # 1475 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1475#0 length = 489 sequences # 1

consensus_1475#1 length = 486 sequences # 1

consensusID : consensus_1475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTTCTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGGCGGCGAGGC]

[+] EMBL BM609812             [CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTTCTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGGCGGCGAGGC]




>consensus_1475#0
CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTT
CTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGA
CGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTC
CGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAG
GCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCA
CGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCC
GGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAA
GGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGG
CGGCGAGGC

consensusID : consensus_1475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [CGCCACGAGGTGTAGCGATCAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACGGCGGGGCGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACGGAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG]

[+] EMBL BX469517             [CGCCACGAGGTGTAGCGATCAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACGGCGGGGCGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACGGAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG]




>consensus_1475#1
CGCCACGAGGTGTAGCGATCAGCTGTTCGACGAGAACAAGAGCCTGGGCGGGTTCAACCT
GCGCCATCTGCTGTACCAGCAGGACGGGTCCGAGTACGTGCGCTCGACCGTGGACAAGAT
CTTCGGGCTGTGGAAGGACGGCAAGGTGAGGCCGGTGGTCGATTCGGCCTGGGCGCTCGA
GGACGTGGCGGAAGCGATGCAGAAGATGCACGACCGCAAGAACATCGGCAAGCTGGTGCT
GGACCCGTCGATGGAACCGAAGCCGAAGCCGGCCACGCCCGCCAAGAGCAAGTCGAAGAA
GCAGGCCAGCGAGGACAAGGGCGGCAAGAAGGACAAGGAGAACGGCGAGGAGGGCGGCGA
GGCGGCCCACGTGAACGGGGACGGCGGGGCGGCAGAGCAGAAGGAGGAACCGGCCGCCGC
CGCCGCCGNTACCAATGGCGATAGCGACGGAGAGTGAGAAGAAGGAATCGAGTTGAACGG
TTAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1475#0      CCGCCCACGCGTCCGCCTGTACGGCTCGTCGAACGTTGTCACCGGCGAGACGAAGAGCTT 60
consensus_1475#1      ------------------------------------------------------------
                                                                                  

consensus_1475#0      CTTCTGCGTTGCCCGCTCGTGGTGGCAGGTGGACAAAGTGTCGCCGATCAAGCTGTTCGA 120
consensus_1475#1      ----------------------------CGCCACGAGGTGTAGC-GATCA-GCTGTTCGA 30
                                                      ** * **** ** ***** *********

consensus_1475#0      CGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTC 180
consensus_1475#1      CGAGAACAAGAGCCTGGGCGGGTTCAACCTGCGCCATCTGCTGTACCAGCAGGACGGGTC 90
                      ************************************************************

consensus_1475#0      CGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAG 240
consensus_1475#1      CGAGTACGTGCGCTCGACCGTGGACAAGATCTTCGGGCTGTGGAAGGACGGCAAGGTGAG 150
                      ************************************************************

consensus_1475#0      GCCGGTGGTCGATTCCGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCA 300
consensus_1475#1      GCCGGTGGTCGATTCGGCCTGGGCGCTCGAGGACGTGGCGGAAGCGATGCAGAAGATGCA 210
                      *************** ********************************************

consensus_1475#0      CGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCC 360
consensus_1475#1      CGACCGCAAGAACATCGGCAAGCTGGTGCTGGACCCGTCGATGGAACCGAAGCCGAAGCC 270
                      ************************************************************

consensus_1475#0      GGCCACGCCCGCCAAGAGCAAGTCCAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAA 420
consensus_1475#1      GGCCACGCCCGCCAAGAGCAAGTCGAAGAAGCAGGCCAGCGAGGACAAGGGCGGCAAGAA 330
                      ************************ ***********************************

consensus_1475#0      GGACAAGGAGGACGACAAGAAGTCGGCCGAGAATGGGGGCGGCGACGAGAAGAAGGAGGG 480
consensus_1475#1      GGACAAGGAGAACGGCGAGGAGGGCGGCGAGGCGGCCCACGTGAACGGGGACG-GCGGGG 389
                      ********** *** * ** **   * ****   *    **   *** * *   *  ***

consensus_1475#0      CGGCGAGGC--------------------------------------------------- 489
consensus_1475#1      CGGCAGAGCAGAAGGAGGAACCGGCCGCCGCCGCCGCCGNTACCAATGGCGATAGCGACG 449
                      ****   **                                                   

consensus_1475#0      -------------------------------------
consensus_1475#1      GAGAGTGAGAAGAAGGAATCGAGTTGAACGGTTAGCG 486