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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence
[ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACCACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACTAGTACACTTCCCCGTGCGGTAGATGATAAATTAACAAAGCAAAAAACAATATTTAACTTAATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGTCTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGACACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACTACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCACACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTACCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTTCCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGTGCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCCTCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGACACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTGCTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC]
[+] EMBL AL692453 [ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACCACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACTAGTACACTTCCCCGTGCGGTAGATGATAAATTAACAAAGCAAAAAACAATATTTAACTTAATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGTCTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGACACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACTACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCACACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTACCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTTCCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGTGCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCCTCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGACACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTGCTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC]
consensusID : consensus_1493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence
[CGATACAGCATAAACACAGACACACACATACACACACTCACACATAATAATTACAATATATTAGAATGAAGAAAAATTTAAATGCGAACGGGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGATTTTTCGATGGAGGCGCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTACACACACACACATTTGCTTATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAGGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGTGCGGTA]
[+] EMBL BX617156 [CGATACAGCATAAACACAGACACACACATACACACACTCACACATAATAATTACAATATATTAGAATGAAGAAAAATTTAAATGCGAACGGGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGATTTTTCGATGGAGGCGCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTACACACACACACATTTGCTTATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAGGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATGTTTTTAGCTGTTGATGATGATATCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGTGCGGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1493#0 ATTCCGAGGTTAAGTGGAAAATTGAGGCTACGCTTTGCTTATTCCGGTTTTAAATGTACC 60
consensus_1493#1 ---------------------------CGATACAGCA-TAAACACAGACACACACATAC- 31
* * * * * * * * * ***
consensus_1493#0 ACACATACGATCGAAAAAAGAAGAACACATAATCTTATAGCCAAGAGACAAATGTTGATG 120
consensus_1493#1 ACACACTCACACATAATAATTACAATATATTAGAATGAAGA-AAAATTTAAATGCGAACG 90
***** * * ** ** * ** * ** * * ** ** * ***** * *
consensus_1493#0 T--TTTTAGCTGTTGATGATGATATCGCACCACGTGTTTGGCATGTTTTCTGTGGCGACT 178
consensus_1493#1 GGGCTTCCACCTTCGGTTCTGTTTTTATACAAGATATGGCGGAT-TTTTCGATGGAGGC- 148
** * * * * ** * * ** * * * * ** ***** *** * *
consensus_1493#0 AGTACACTTCCCCGTGCGGTAGATG-ATAAATTAACAAAGCAAAAAACAATATTTAACTT 237
consensus_1493#1 -GCGCGCATTGGTGTGTTGAAAATGGATTAAAGAAGAGCGGGGGGAAAAACACATACCTA 207
* * * * *** * * *** ** ** ** * * ** ** * ** **
consensus_1493#0 AATCAGCGCACCTTCTACTACTACTACATATAACCTCTTTTAGCCCAGCTCATCATCTGT 297
consensus_1493#1 CACACACACACATT-TGCT--TATTCCGTTTTAAATGTACCACATACGATCAAAAAAAAG 264
* * *** ** * ** ** * * * * * * * * * *** *
consensus_1493#0 CTGCGGTACCCATTCTTATCGGCTATGCTGATAGAAAGTTAGCACACAGAAACTCCGGGA 357
consensus_1493#1 GAAGAACACATAATCTTATAG------CCAAGAGACAA-----ATGTTGATGTTTTTAGC 313
** * ****** * * * *** * * ** * *
consensus_1493#0 CACTTATTACAACCAACCTTCTTAGCACACACAACGGCTGTCAGCTAAGGAACGTACACT 417
consensus_1493#1 TGTTGATGATGATA-----TCGTACCACATGTTTGGCATGTTTTCAGTGGCACTTTCAGT 368
* ** * * ** ** **** * *** * ** ** * ** *
consensus_1493#0 ACGCAAACTGCTCTGCAGCCACAATCTTCCATTAACCCAGCTCGGAGTAGGCACCGCGCA 477
consensus_1493#1 GCGGTA------------------------------------------------------ 374
** *
consensus_1493#0 CACACTTACCAGCAAACCTGCANTAACTCTNCTACTTCACTGCNATCTTCCAGGCTTTTA 537
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 CCAACCAAACCACCGAAATAATGGTACACGCGCGCGAAANGAGGCTTAAGCGACAAATTT 597
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 CCCTTGCCAAATTATTACCTCAAATAACCGGGGCTCCGGGCACTTCCTCGTTTCCAGCGT 657
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 GCGCACGCGGCCGCNTGGCACTTGCACGCGCNCAGCGNTGCTTTCACTCCCCCCCACCCC 717
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 TCTGGCCCTGGCTTCCCCCCTCCCTGCNACCTGCTGNCTTGCTGCTNNCCTGGCCCCGAC 777
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 ACCCGGCNGCACCCCGCNNGCCTACCCGCCTACCCGCGGCTTGACTTCCACCTAGCCCTG 837
consensus_1493#1 ------------------------------------------------------------
consensus_1493#0 CTGGCTCCGCANCCGCTGNGGGGCTCTACTTGCCCNCNNCCCCGGCGGC 886
consensus_1493#1 -------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||