cluster # 15

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Anopheles gambiae
cluster # 15 cluster # 15 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15#0 length = 633 sequences # 1

consensus_15#1 length = 526 sequences # 1

consensusID : consensus_15#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [ACAACAAAAAAACATTGAAACCTTCTGCTCTAAGCGCAACACAAAACAAGTGAAAAAGTGGACGGGATCGAAAATTGATCGAAGAAAACTGAACAAAAAGCAACGTGTAATCCAAACAGGTTAAACTGGCGACAAAACTTGCAAAAAAAAAGCAACAAAATTGTATTATAAAAAGAGCAAAGCGGAGAAGAAAAGAAGAATCTGTTTCGGCAGTATAGAGAACGAACGAGAGAGAGAGACAGCTAAAAACCGAACGGTTTGTTTATTGTTCCGTTGGCTCTCCCCTCCGGAGTGAAGTTCAGTATCAGTTGTGGATAGAAGCTATGGTACACTTAAGATGTGTTAAATGTGTAAGATTGGAATGTAAAACATTACCTAAACCGAAAGGGCAGGCTAGTAAGAAAGTATTTAAACGGAATGGGCGGAAGCAAAGCGAGATGAAAACGACATCGCGGTATATAAATATATATATACACACACACACATATAACGATAAGCTTATCGGTAAAACCTTGAGTTGTGTAAGGGCAGTTGCGTTATTCTATTACACTTTAGTAGACCCAAAAGGTAAATATAGTACACTGAAGGAAGAGGAGGTGTGGAGGGTTCAGCTTGCGGAGGACGCGGAAGCAG]

[+] EMBL BM632031             [ACAACAAAAAAACATTGAAACCTTCTGCTCTAAGCGCAACACAAAACAAGTGAAAAAGTGGACGGGATCGAAAATTGATCGAAGAAAACTGAACAAAAAGCAACGTGTAATCCAAACAGGTTAAACTGGCGACAAAACTTGCAAAAAAAAAGCAACAAAATTGTATTATAAAAAGAGCAAAGCGGAGAAGAAAAGAAGAATCTGTTTCGGCAGTATAGAGAACGAACGAGAGAGAGAGACAGCTAAAAACCGAACGGTTTGTTTATTGTTCCGTTGGCTCTCCCCTCCGGAGTGAAGTTCAGTATCAGTTGTGGATAGAAGCTATGGTACACTTAAGATGTGTTAAATGTGTAAGATTGGAATGTAAAACATTACCTAAACCGAAAGGGCAGGCTAGTAAGAAAGTATTTAAACGGAATGGGCGGAAGCAAAGCGAGATGAAAACGACATCGCGGTATATAAATATATATATACACACACACACATATAACGATAAGCTTATCGGTAAAACCTTGAGTTGTGTAAGGGCAGTTGCGTTATTCTATTACACTTTAGTAGACCCAAAAGGTAAATATAGTACACTGAAGGAAGAGGAGGTGTGGAGGGTTCAGCTTGCGGAGGACGCGGAAGCAG]




>consensus_15#0
ACAACAAAAAAACATTGAAACCTTCTGCTCTAAGCGCAACACAAAACAAGTGAAAAAGTG
GACGGGATCGAAAATTGATCGAAGAAAACTGAACAAAAAGCAACGTGTAATCCAAACAGG
TTAAACTGGCGACAAAACTTGCAAAAAAAAAGCAACAAAATTGTATTATAAAAAGAGCAA
AGCGGAGAAGAAAAGAAGAATCTGTTTCGGCAGTATAGAGAACGAACGAGAGAGAGAGAC
AGCTAAAAACCGAACGGTTTGTTTATTGTTCCGTTGGCTCTCCCCTCCGGAGTGAAGTTC
AGTATCAGTTGTGGATAGAAGCTATGGTACACTTAAGATGTGTTAAATGTGTAAGATTGG
AATGTAAAACATTACCTAAACCGAAAGGGCAGGCTAGTAAGAAAGTATTTAAACGGAATG
GGCGGAAGCAAAGCGAGATGAAAACGACATCGCGGTATATAAATATATATATACACACAC
ACACATATAACGATAAGCTTATCGGTAAAACCTTGAGTTGTGTAAGGGCAGTTGCGTTAT
TCTATTACACTTTAGTAGACCCAAAAGGTAAATATAGTACACTGAAGGAAGAGGAGGTGT
GGAGGGTTCAGCTTGCGGAGGACGCGGAAGCAG

consensusID : consensus_15#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [TATAAAAAGAGCAAAGCGGAGAAGAAAAGAAGAATCTGTTTCGGCAGTATAGAGAACAAACGAGAGAGAGAGAGAGACAGCTAAAAACCGAACGGTTTGTTTATTGTTCCGTTGGCTCTCCCCTCCGGAGTGAAGTTCAGTATCAGTTGTGGATAGAATCTATGGTACACTTAAGATGTGTTAAATGTGTAAGATTGGAATGTAAAACATTACCAAAACCGAAAGGGCAGGCTAGTAAGAAAGTATTTAAACGGAATGGGCGGAAGCAAAGCGAGATGAAAACGACATCGCGGTATATAAATATATATATACACACACACATATAACGATAAGCTTATCGGTAAAACCTTGAGTTGTGTAAGGGCAGTTGCGTTATTCTATTACACTTTAATAGGAAGAGGAGGTGTGGAGGGTTCAGCTTGCGGAGGACGCGGAAGCAGAGGAGCGAAACACAAAACGAGACGAGACAGCAAACGGTTGGATGATACTTCAGAATAAAATCAATCAAATCTAGTTAGAGAACAAA]

[+] EMBL BX609691             [TATAAAAAGAGCAAAGCGGAGAAGAAAAGAAGAATCTGTTTCGGCAGTATAGAGAACAAACGAGAGAGAGAGAGAGACAGCTAAAAACCGAACGGTTTGTTTATTGTTCCGTTGGCTCTCCCCTCCGGAGTGAAGTTCAGTATCAGTTGTGGATAGAATCTATGGTACACTTAAGATGTGTTAAATGTGTAAGATTGGAATGTAAAACATTACCAAAACCGAAAGGGCAGGCTAGTAAGAAAGTATTTAAACGGAATGGGCGGAAGCAAAGCGAGATGAAAACGACATCGCGGTATATAAATATATATATACACACACACATATAACGATAAGCTTATCGGTAAAACCTTGAGTTGTGTAAGGGCAGTTGCGTTATTCTATTACACTTTAATAGGAAGAGGAGGTGTGGAGGGTTCAGCTTGCGGAGGACGCGGAAGCAGAGGAGCGAAACACAAAACGAGACGAGACAGCAAACGGTTGGATGATACTTCAGAATAAAATCAATCAAATCTAGTTAGAGAACAAA]




>consensus_15#1
TATAAAAAGAGCAAAGCGGAGAAGAAAAGAAGAATCTGTTTCGGCAGTATAGAGAACAAA
CGAGAGAGAGAGAGAGACAGCTAAAAACCGAACGGTTTGTTTATTGTTCCGTTGGCTCTC
CCCTCCGGAGTGAAGTTCAGTATCAGTTGTGGATAGAATCTATGGTACACTTAAGATGTG
TTAAATGTGTAAGATTGGAATGTAAAACATTACCAAAACCGAAAGGGCAGGCTAGTAAGA
AAGTATTTAAACGGAATGGGCGGAAGCAAAGCGAGATGAAAACGACATCGCGGTATATAA
ATATATATATACACACACACATATAACGATAAGCTTATCGGTAAAACCTTGAGTTGTGTA
AGGGCAGTTGCGTTATTCTATTACACTTTAATAGGAAGAGGAGGTGTGGAGGGTTCAGCT
TGCGGAGGACGCGGAAGCAGAGGAGCGAAACACAAAACGAGACGAGACAGCAAACGGTTG
GATGATACTTCAGAATAAAATCAATCAAATCTAGTTAGAGAACAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15#0      ACAACAAAAAAACATTGAAACCTTCTGCTCTAAGCGCAACACAAAACAAGTGAAAAAGTG 60
consensus_15#1      ------------------------------------------------------------
                                                                                

consensus_15#0      GACGGGATCGAAAATTGATCGAAGAAAACTGAACAAAAAGCAACGTGTAATCCAAACAGG 120
consensus_15#1      ------------------------------------------------------------
                                                                                

consensus_15#0      TTAAACTGGCGACAAAACTTGCAAAAAAAAAGCAACAAAATTGTATTATAAAAAGAGCAA 180
consensus_15#1      ----------------------------------------------TATAAAAAGAGCAA 14
                                                                  **************

consensus_15#0      AGCGGAGAAGAAAAGAAGAATCTGTTTCGGCAGTATAGAGAACGAACGAGAGAGAGAGA- 239
consensus_15#1      AGCGGAGAAGAAAAGAAGAATCTGTTTCGGCAGTATAGAGAACAAACGAGAGAGAGAGAG 74
                    ******************************************* *************** 

consensus_15#0      ---CAGCTAAAAACCGAACGGTTTGTTTATTGTTCCGTTGGCTCTCCCCTCCGGAGTGAA 296
consensus_15#1      AGACAGCTAAAAACCGAACGGTTTGTTTATTGTTCCGTTGGCTCTCCCCTCCGGAGTGAA 134
                       *********************************************************

consensus_15#0      GTTCAGTATCAGTTGTGGATAGAAGCTATGGTACACTTAAGATGTGTTAAATGTGTAAGA 356
consensus_15#1      GTTCAGTATCAGTTGTGGATAGAATCTATGGTACACTTAAGATGTGTTAAATGTGTAAGA 194
                    ************************ ***********************************

consensus_15#0      TTGGAATGTAAAACATTACCTAAACCGAAAGGGCAGGCTAGTAAGAAAGTATTTAAACGG 416
consensus_15#1      TTGGAATGTAAAACATTACCAAAACCGAAAGGGCAGGCTAGTAAGAAAGTATTTAAACGG 254
                    ******************** ***************************************

consensus_15#0      AATGGGCGGAAGCAAAGCGAGATGAAAACGACATCGCGGTATATAAATATATATATACAC 476
consensus_15#1      AATGGGCGGAAGCAAAGCGAGATGAAAACGACATCGCGGTATATAAATATATATATACAC 314
                    ************************************************************

consensus_15#0      ACACACACATATAACGATAAGCTTATCGGTAAAACCTTGAGTTGTGTAAGGGCAGTTGCG 536
consensus_15#1      ACACACA--TATAACGATAAGCTTATCGGTAAAACCTTGAGTTGTGTAAGGGCAGTTGCG 372
                    *******  ***************************************************

consensus_15#0      TTATTCTATTACACTTTAGTAGACCCAAAAGGTAAATATAGTACA-CTGAAGGAAGAGGA 595
consensus_15#1      TTATTCTATTACACTTTAATAGGAAGAGGAGGTGTGGAGGGTTCAGCTTGCGGAGGACGC 432
                    ****************** ***    *  ****    *  ** ** **   *** ** * 

consensus_15#0      GGTGTGGAGGGTTCAGCTTGCGGAGGACGCGGAAGCAG---------------------- 633
consensus_15#1      GGAAGCAGAGGAGCGAAACACAAAACGAGACGAGACAGCAAACGGTTGGATGATACTTCA 492
                    **       **  *      *  *    *  **  ***                      

consensus_15#0      ----------------------------------
consensus_15#1      GAATAAAATCAATCAAATCTAGTTAGAGAACAAA 526