These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 809 fasta sequence [CAGAATCCCCGCNGGTTAAATAGAACTACAAAAACAAAACGATAGCAAAACGATAAGGAAATCTCTTTGCACCTTCCCATTTTGTCTAGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACCGCTCACTTAAAACACTCACCCACTTTCCCTAGCCTCACTTTGACCAGCTACTCAGCAGCTAACGTGCCGGCAGTGAGAAGGAAACGGAACAACAATCAATCGTACTCGTTCTTTCGCTTTTATAAACTAGCCTATAAGCCAACCTTACCTTACCTACCCAATTACTTGTACACTTCTGAAACGTCATGCAACACTTACCAACCTAACTCATACGTTTGCCACCAACATTACCATCACACATGATGCTGCTACTAATTATGATCGCATCACGAGTATGTCGANATGTCGCATNNGATTCTTAATCGTNCGAATCCTTTANTCGCGATGGCGCGCACTGTGTCGTACGTNAACCCTCCCCGTAGCCAGTGTNACATACCATTGGCGGCTTCACTGACCTTGTGGCTTTCAGCAATCTATGTGCAAGCTTATACGGGGAACANACAATTACCCACACACACAAATGGGCACCTAACTTACCTCCACAATTNTGNTTGCCATCCATCCGGTCNACCGTGTAGCACGCTTTCAAACACGCTCNTTGAACCGGATTTAAAGGCAAACAAACAACCACNCAGGAGACAACGTNCGTACCGCCTTATGNTTACACAAAAAAAACGACATCNTCGCTATATTAATGCTAAGGCTACANAGNGTGTACNCCTAACTGG] [+] EMBL AL692539 [CAGAATCCCCGCNGGTTAAATAGAACTACAAAAACAAAACGATAGCAAAACGATAAGGAAATCTCTTTGCACCTTCCCATTTTGTCTAGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACCGCTCACTTAAAACACTCACCCACTTTCCCTAGCCTCACTTTGACCAGCTACTCAGCAGCTAACGTGCCGGCAGTGAGAAGGAAACGGAACAACAATCAATCGTACTCGTTCTTTCGCTTTTATAAACTAGCCTATAAGCCAACCTTACCTTACCTACCCAATTACTTGTACACTTCTGAAACGTCATGCAACACTTACCAACCTAACTCATACGTTTGCCACCAACATTACCATCACACATGATGCTGCTACTAATTATGATCGCATCACGAGTATGTCGANATGTCGCATNNGATTCTTAATCGTNCGAATCCTTTANTCGCGATGGCGCGCACTGTGTCGTACGTNAACCCTCCCCGTAGCCAGTGTNACATACCATTGGCGGCTTCACTGACCTTGTGGCTTTCAGCAATCTATGTGCAAGCTTATACGGGGAACANACAATTACCCACACACACAAATGGGCACCTAACTTACCTCCACAATTNTGNTTGCCATCCATCCGGTCNACCGTGTAGCACGCTTTCAAACACGCTCNTTGAACCGGATTTAAAGGCAAACAAACAACCACNCAGGAGACAACGTNCGTACCGCCTTATGNTTACACAAAAAAAACGACATCNTCGCTATATTAATGCTAAGGCTACANAGNGTGTACNCCTAACTGG] consensusID : consensus_1503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [GAATCCCCCGAGGTTTAAAAGTCGAAACACGGTCCAAAACGTGCGAGGGCNTTCATTTCGTATTGTGAAGCTTTCAATGTGTATGTCGTTGCGTTATTGTAGTTATGTCTAGTAGCAATTTTTAGCCGAGTTCACAGAATGGTTGCTTTAGGATTCAAACATTGCGTTACCATACGAATACGATTTGGTAATTTACTGTTACAATTAGTGCAAGTGATGCATCTGTTGTAGGGTTGTAACATTAACATTTGTGTGTAGTNTTATCTTATACTTACAATAGAACAATTGCTCATTCAAAGCTACTAGTCTAGTGCAAGCTGAAAACATTACATACATTAATTTCAATGTATAAAATCTAAAAATAGAACTACAAAAACCAAAACCGATAGCAAAACGAACAGGANAATCTCTTTGCACCTTCCCATTTGTCTAGGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACACACACACACACACCATGCAAAACCATGCAAACCATACCGTATATGGCATTACACACTATGATAGGCAATATGCGAGCAAACNNATTTAGGCNATATGCACGCGCGCGCCCGCACAAAGCTAATAGTAAGTGGCCTGCAAAGCACGGACC] [+] EMBL AL692482 [GAATCCCCCGAGGTTTAAAAGTCGAAACACGGTCCAAAACGTGCGAGGGCNTTCATTTCGTATTGTGAAGCTTTCAATGTGTATGTCGTTGCGTTATTGTAGTTATGTCTAGTAGCAATTTTTAGCCGAGTTCACAGAATGGTTGCTTTAGGATTCAAACATTGCGTTACCATACGAATACGATTTGGTAATTTACTGTTACAATTAGTGCAAGTGATGCATCTGTTGTAGGGTTGTAACATTAACATTTGTGTGTAGTNTTATCTTATACTTACAATAGAACAATTGCTCATTCAAAGCTACTAGTCTAGTGCAAGCTGAAAACATTACATACATTAATTTCAATGTATAAAATCTAAAAATAGAACTACAAAAACCAAAACCGATAGCAAAACGAACAGGANAATCTCTTTGCACCTTCCCATTTGTCTAGGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACACACACACACACACCATGCAAAACCATGCAAACCATACCGTATATGGCATTACACACTATGATAGGCAATATGCGAGCAAACNNATTTAGGCNATATGCACGCGCGCGCCCGCACAAAGCTAATAGTAAGTGGCCTGCAAAGCACGGACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1503#0 CAGAATCCCCGCNGGTTAAATAGAACTACAAAAACAAAACGATAGCAAAACGATAAGGAA 60 consensus_1503#1 ------------------------------------------------------------ consensus_1503#0 ATCTCTTTGCACCTTCCCATTTTGTCTAGTCCATAGTACGTCAGCAGACTTCACAACTCA 120 consensus_1503#1 ------------------------------------------------------------ consensus_1503#0 CAAATTTTGCCAGAACATACCGCTCACTTAAAACACTCACCCACTTTCCCTAGCCTCACT 180 consensus_1503#1 -----------------------------------------GAATCCCCCGAGGTTTAA- 18 * * *** ** * * consensus_1503#0 TTGACCAGCTACTCAGCAGCTAACGTGCC--GGCAGTGAGAAGGAAACGGAACAACAATC 238 consensus_1503#1 --AAGTCGAAACACGGTCCAAAACGTGCGAGGGCNTTCATTTCGTATTGTGA-AGCTTTC 75 * * ** * * ******* *** * * * * * * * * ** consensus_1503#0 AATCGTACTCGTTCTTTCGCTTTTATAAACTAGCCTATAAGCCAACCTTACCTTACCTAC 298 consensus_1503#1 AAT-GTGTATGTCGTTGCGTTATTGTAGTTATGTCTAGTAGCAATTTTTAGCCGAGTTCA 134 *** ** ** ** ** * ** ** * *** *** * *** * * * consensus_1503#0 CCAATTACTTG-TACACTTCTGAAACGTCATGCAACACTTACCAACCTAACTCATACGTT 357 consensus_1503#1 CAGAATGGTTGCTTTAGGATTCAAACATTGCGTTAC-CATACGAATACGATTTGGTAATT 193 * * * *** * * * **** * * ** * *** ** * * ** consensus_1503#0 TGCCACCAACATTACCATCACACATGATGCTGCTACTAATTATGATCGCATCACGAGTAT 417 consensus_1503#1 TACTGTTACAATTAGTG---CAAGTGATGCATCTGTTG--TAGGGTTGTAACATTAACAT 248 * * * **** ** ****** ** * ** * * * * ** * ** consensus_1503#0 GTCGANAT-GTCGCATNNGATTCTTA-ATCGTNCGAATCCTTTANTCGCGATGGCGCGCA 475 consensus_1503#1 TTGTGTGTAGTNTTATCTTATACTTACAATAGAACAATTGCTCATTCAAAGCTACTAGTC 308 * * ** ** ** **** * *** * * ** * * consensus_1503#0 CTGTGTCGTACGTNAACCCTCCCCGTAGCCAGTGTNACATA------CCATTGGCGGCTT 529 consensus_1503#1 TAGTGCAAGCTGAAAACATTACATACATTAATTTCAATGTATAAAATCTAAAAATAGAAC 368 *** * *** * * * * * * ** * * * consensus_1503#0 CACTGACCTTGTGGCTTTCAGCAATCTATGTGCAAGCTTATACGGGGAACANACAATT-A 588 consensus_1503#1 TACAAAAACCAAAACCGATAGCAAAACGAACAGGANAATCTCTTTGCACCTTCCCATTTG 428 ** * * ***** * * * * * * * *** consensus_1503#0 CCCACACACACAAATGGGCACCTAACTTACCTCCACAATTNTGNTTGCCATCCATCCGGT 648 consensus_1503#1 TCTAGGTCCATAGTACGTCAGCAGACTTCACAACTCACAAATTTTGCCAGAACATACACA 488 * * ** * * ** * **** * * ** * * * *** * consensus_1503#0 CNACCGTGTAGCACGCTTTCAAACACGCTCNTTGAACCGGATTTAAAGGCAAACAAACAA 708 consensus_1503#1 CACACACACACCATGCAA--AACCATGCAAACCATACCGTATATGGCATTACACAC---- 542 * * * ** ** ** ** ** **** ** * * *** consensus_1503#0 CCACNCAGGAGACAACGTNCGTACCGCCTTATGNTTACACAAAAAAAACG-ACATCNTCG 767 consensus_1503#1 ---TATGATAGGCAATATGCGAGCAAACNNATTTAGGCNATATGCACGCGCGCGCCCGCA 599 ** *** * ** * * ** * * * ** * * * consensus_1503#0 CTATATTAATGCTAAGG---CTACANAGNGTGTACNCCTAACTGG 809 consensus_1503#1 CAAAGCTAATAGTAAGTGGCCTGCAAAGCACGGACC--------- 635 * * **** **** ** ** ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||