cluster # 1511

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Anopheles gambiae
cluster # 1511 cluster # 1511 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1511#0 length = 895 sequences # 1

consensus_1511#1 length = 528 sequences # 1

consensusID : consensus_1511#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 895
fasta sequence

                              [AGGCAGAATTCCCGAGGTTAAGTTTTAGCAGGAGCAGAAGCAGAATATGAAGTTTGGCAAACTGGCAAGCAGAATAGTGCGCCACAGCAGAAGCGTTCGTCCTGTTGGAGCGTGAGTGCCTGGGTGTACGTAAATGGGCAAGTTACTTCCTTCGAGATATTATGGGCTGCCAGCTNCACTTCTCTTTAANATACAGCACTATNTACCAAAATTTNTGCCCTATGCAGGCTANNCTTTACTTGGAACCGCAACACAACCTTTCACACCCCCGGCCANGAAGGAAAACCCAAGGNTCTTGGCAAGCCCACTGGGTATACAACCGGGTTCCCACTCACNCAACTTNACTATATCANCCAACCCTTACTATCTCCTANCCATTAACCCNATATGGGCNACCCGACANCAAAATTCCGACCAGCACCCCCATATACCACACACACACCGGAGATACACACAACAAANGCTCNTACCCTTGGACTGGCTTNCCANCTTCTAACTTAACGCGAACACTTGGCCACACATTGGATTCCCACTTGGNACTTTCCCACACTTTGGCTTTCNAACNCATCGCGGCCCNGCTTCCCACNCACACTTTNACCACCACGGGCGCCCAACCTTNCACCNGCGGCATGGCACTACCCNGCGCGCCCCATCTNGCAAACCATGGCCAACATTGGAGNCATGGAAAACAACACCGGCGGCCGGACGCGCGTCNTGGGACCACNCCTCATGGGGCGCCCCAGCGAACATCTATCCAACAAGGGCCACAACCCCCGGTGGGCAACACAAACCCCACAAAGCCACCCAACACCCGNCGCCCACCTTNGCAGCCCACACGCCACACACGCGGGGCACAGCCAACGCCAACNNGAACGCAAAGGCAAAGANAACGCAN]

[+] EMBL AL692523             [AGGCAGAATTCCCGAGGTTAAGTTTTAGCAGGAGCAGAAGCAGAATATGAAGTTTGGCAAACTGGCAAGCAGAATAGTGCGCCACAGCAGAAGCGTTCGTCCTGTTGGAGCGTGAGTGCCTGGGTGTACGTAAATGGGCAAGTTACTTCCTTCGAGATATTATGGGCTGCCAGCTNCACTTCTCTTTAANATACAGCACTATNTACCAAAATTTNTGCCCTATGCAGGCTANNCTTTACTTGGAACCGCAACACAACCTTTCACACCCCCGGCCANGAAGGAAAACCCAAGGNTCTTGGCAAGCCCACTGGGTATACAACCGGGTTCCCACTCACNCAACTTNACTATATCANCCAACCCTTACTATCTCCTANCCATTAACCCNATATGGGCNACCCGACANCAAAATTCCGACCAGCACCCCCATATACCACACACACACCGGAGATACACACAACAAANGCTCNTACCCTTGGACTGGCTTNCCANCTTCTAACTTAACGCGAACACTTGGCCACACATTGGATTCCCACTTGGNACTTTCCCACACTTTGGCTTTCNAACNCATCGCGGCCCNGCTTCCCACNCACACTTTNACCACCACGGGCGCCCAACCTTNCACCNGCGGCATGGCACTACCCNGCGCGCCCCATCTNGCAAACCATGGCCAACATTGGAGNCATGGAAAACAACACCGGCGGCCGGACGCGCGTCNTGGGACCACNCCTCATGGGGCGCCCCAGCGAACATCTATCCAACAAGGGCCACAACCCCCGGTGGGCAACACAAACCCCACAAAGCCACCCAACACCCGNCGCCCACCTTNGCAGCCCACACGCCACACACGCGGGGCACAGCCAACGCCAACNNGAACGCAAAGGCAAAGANAACGCAN]




>consensus_1511#0
AGGCAGAATTCCCGAGGTTAAGTTTTAGCAGGAGCAGAAGCAGAATATGAAGTTTGGCAA
ACTGGCAAGCAGAATAGTGCGCCACAGCAGAAGCGTTCGTCCTGTTGGAGCGTGAGTGCC
TGGGTGTACGTAAATGGGCAAGTTACTTCCTTCGAGATATTATGGGCTGCCAGCTNCACT
TCTCTTTAANATACAGCACTATNTACCAAAATTTNTGCCCTATGCAGGCTANNCTTTACT
TGGAACCGCAACACAACCTTTCACACCCCCGGCCANGAAGGAAAACCCAAGGNTCTTGGC
AAGCCCACTGGGTATACAACCGGGTTCCCACTCACNCAACTTNACTATATCANCCAACCC
TTACTATCTCCTANCCATTAACCCNATATGGGCNACCCGACANCAAAATTCCGACCAGCA
CCCCCATATACCACACACACACCGGAGATACACACAACAAANGCTCNTACCCTTGGACTG
GCTTNCCANCTTCTAACTTAACGCGAACACTTGGCCACACATTGGATTCCCACTTGGNAC
TTTCCCACACTTTGGCTTTCNAACNCATCGCGGCCCNGCTTCCCACNCACACTTTNACCA
CCACGGGCGCCCAACCTTNCACCNGCGGCATGGCACTACCCNGCGCGCCCCATCTNGCAA
ACCATGGCCAACATTGGAGNCATGGAAAACAACACCGGCGGCCGGACGCGCGTCNTGGGA
CCACNCCTCATGGGGCGCCCCAGCGAACATCTATCCAACAAGGGCCACAACCCCCGGTGG
GCAACACAAACCCCACAAAGCCACCCAACACCCGNCGCCCACCTTNGCAGCCCACACGCC
ACACACGCGGGGCACAGCCAACGCCAACNNGAACGCAAAGGCAAAGANAACGCAN

consensusID : consensus_1511#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [CCGCGCCACCAGCAGAAGCGTTCGTCTTGTTGGAGCGTGAGTGCCGGGTGTCACGTAAATGGGCAAGTTACTTCCTTCGGTTTTGGTTGCAGTTTTTTTTTTTGCTTTCCAATTTGCTTGAGCTAGTTTGGACAAAACTTCAACCCGCAGAGAACCAGTCTGGAGCCATGGTTTTTGTTTTATTTTATTTTTTCACTTTTACTACTTGTCGTTATCGGCCTTTTTTTCTGGTTTTTAGTTACTGTGTTTTATTAATAGGAATGCAGTGTCATGATAAATGTCAGTCGGCGTTAAAATTAAAGGGCATTCGGTGTCCGTGCTTGTTGATGGTGAAACGGCGGGGTGGCTTTGTGCAGGATTTTTGCAAACGGAAACAACACAACGGATGAGAGGAGGGAGAGAGAGAGAGAGATGGGGTGAAAACTTGTTTTGATAAACGTTTATATACAAACATTTCTCGAGTTCTGCCAAATATTATAGAGCAAGTCGTTTGGTGAAGGGCAAAATGAGACCCTCGGTTATTAATTT]

[+] EMBL BM643008             [CCGCGCCACCAGCAGAAGCGTTCGTCTTGTTGGAGCGTGAGTGCCGGGTGTCACGTAAATGGGCAAGTTACTTCCTTCGGTTTTGGTTGCAGTTTTTTTTTTTGCTTTCCAATTTGCTTGAGCTAGTTTGGACAAAACTTCAACCCGCAGAGAACCAGTCTGGAGCCATGGTTTTTGTTTTATTTTATTTTTTCACTTTTACTACTTGTCGTTATCGGCCTTTTTTTCTGGTTTTTAGTTACTGTGTTTTATTAATAGGAATGCAGTGTCATGATAAATGTCAGTCGGCGTTAAAATTAAAGGGCATTCGGTGTCCGTGCTTGTTGATGGTGAAACGGCGGGGTGGCTTTGTGCAGGATTTTTGCAAACGGAAACAACACAACGGATGAGAGGAGGGAGAGAGAGAGAGAGATGGGGTGAAAACTTGTTTTGATAAACGTTTATATACAAACATTTCTCGAGTTCTGCCAAATATTATAGAGCAAGTCGTTTGGTGAAGGGCAAAATGAGACCCTCGGTTATTAATTT]




>consensus_1511#1
CCGCGCCACCAGCAGAAGCGTTCGTCTTGTTGGAGCGTGAGTGCCGGGTGTCACGTAAAT
GGGCAAGTTACTTCCTTCGGTTTTGGTTGCAGTTTTTTTTTTTGCTTTCCAATTTGCTTG
AGCTAGTTTGGACAAAACTTCAACCCGCAGAGAACCAGTCTGGAGCCATGGTTTTTGTTT
TATTTTATTTTTTCACTTTTACTACTTGTCGTTATCGGCCTTTTTTTCTGGTTTTTAGTT
ACTGTGTTTTATTAATAGGAATGCAGTGTCATGATAAATGTCAGTCGGCGTTAAAATTAA
AGGGCATTCGGTGTCCGTGCTTGTTGATGGTGAAACGGCGGGGTGGCTTTGTGCAGGATT
TTTGCAAACGGAAACAACACAACGGATGAGAGGAGGGAGAGAGAGAGAGAGATGGGGTGA
AAACTTGTTTTGATAAACGTTTATATACAAACATTTCTCGAGTTCTGCCAAATATTATAG
AGCAAGTCGTTTGGTGAAGGGCAAAATGAGACCCTCGGTTATTAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1511#0      AGGCAGAATTCCCGAGGTTAAGTTTTAGCAGGAGCAGAAGCAGAATATGAAGTTTGGCAA 60
consensus_1511#1      ------------------------------------------------------------
                                                                                  

consensus_1511#0      ACTGGCAAGCAGAATAGTGCGCCAC-AGCAGAAGCGTTCGTCCTGTTGGAGCGTGAGTGC 119
consensus_1511#1      ----------------CCGCGCCACCAGCAGAAGCGTTCGTCTTGTTGGAGCGTGAGTGC 44
                                        ******* **************** *****************

consensus_1511#0      CTGGGTGTACGTAAATGGGCAAGTTACTTCCTTCGAGATATTATGGGCTGCCAGCTNCAC 179
consensus_1511#1      CGGGTGTCACGTAAATGGGCAAGTTACTTCCTTCGG------------TTTTGGTTGCAG 92
                      * **    ***************************             *    * * ** 

consensus_1511#0      TTCTCTTTAANATACAGCACTATNTACCAAAATTTNTGCCCTATGCAGGCTANNCTTTAC 239
consensus_1511#1      TTTTTTTTT----------TTGCTTTCCAA----TTTGCTTGAGCTAGTTTGGACAAAAC 138
                      ** * ***            *   * ****    * ***   *   **  *   *   **

consensus_1511#0      TTGGAACCGCAACACAACCTTTCACACCCCCGGCCANGAAGGAAAACCCAAGGNTCTTGG 299
consensus_1511#1      TTCAACCCGCAGAGAACCAGTCTGGAGCCATGGTTTTT--GTTTTATTTTATTTTTTCAC 196
                      **  * *****    * *  *    * **  **       *    *    *   * *   

consensus_1511#0      CAAGCCCACTGGGTATACAACCGGGTTCCCACTCACNCAACTTNACTATATCANCCAACC 359
consensus_1511#1      TTTTACTACTTGTCGT--TATCGG---CCTTTTTTTCTGGTTTT----TAGTTACTGTGT 247
                           * *** *   *   * ***   **   *        **     **    *     

consensus_1511#0      CTTACTATCTCCTANCCATTAACCCNATATGGGCNACCCGACANCAAAATTCCGACCAGC 419
consensus_1511#1      TTTATTAATAGGAATGCAGTGTCATGATAAATGTCAGTCGGCGTTAAAATT--AAAGGGC 305
                       *** **      *  ** *  *   ***   *  *  ** *   ******   *   **

consensus_1511#0      ACCCCCATATACCACACACACACCGGAGATACACACAACAAANGCTCNTACCCTTGGACT 479
consensus_1511#1      ATTC---GGTGTC-CGTGCTTGTTGATGGTGAA-ACGGCGGGG-----TGGCTTTGTGCA 355
                      *  *     *  * *   *     *  * *  * **  *         *  * ***  * 

consensus_1511#0      GGCTTNCCANCTTCTAACTTAACGCGAACACTTGGCCACACATTGGATTCCCACTTGGNA 539
consensus_1511#1      GGATTTTTGCAAACGGAAACAACACAACGGATGAGAGGAGGGAGAGAGAGAGA---GAGA 412
                      ** **        *  *   *** * *    *  *          **     *   *  *

consensus_1511#0      CTTTCCCACACTTTGGCTTTCNAACNCATCGCGGCCCNGCTTCCCACNCACACT-TTNAC 598
consensus_1511#1      TGGGGTGAAAACTTGTTTTGATAAACGTTTATATACAAACATTTCTCGAGTTCTGCCAAA 472
                             * *  ***  **   **    *      *   * *  * *     **    * 

consensus_1511#0      CACCACGGGCGCCCAACCTTNCACCNGCGGCATGGCACTACCCNGCGCGCCCCATCTNGC 658
consensus_1511#1      TATTATAGA-GCAAGTCGTTTGGTGAAGGGCAAAATGAGACCCTCGGTTATTAATTT--- 528
                       *  *  *  **    * **        ****       ****   *      ** *   

consensus_1511#0      AAACCATGGCCAACATTGGAGNCATGGAAAACAACACCGGCGGCCGGACGCGCGTCNTGG 718
consensus_1511#1      ------------------------------------------------------------
                                                                                  

consensus_1511#0      GACCACNCCTCATGGGGCGCCCCAGCGAACATCTATCCAACAAGGGCCACAACCCCCGGT 778
consensus_1511#1      ------------------------------------------------------------
                                                                                  

consensus_1511#0      GGGCAACACAAACCCCACAAAGCCACCCAACACCCGNCGCCCACCTTNGCAGCCCACACG 838
consensus_1511#1      ------------------------------------------------------------
                                                                                  

consensus_1511#0      CCACACACGCGGGGCACAGCCAACGCCAACNNGAACGCAAAGGCAAAGANAACGCAN 895
consensus_1511#1      ---------------------------------------------------------