These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1519#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [GAATCCCGAGGTTAANTAAACATACTCTCTTAAGCATCAGTGCAGTCGCCATGGCCAGTTTATCGCATCGACAGTGTTCGGTGAAGTAGTTCAAGTGCGTCAAAATGAACGCCCTGCTCGCTCTGGTGGTTCTTGATGGCGGCGACGTCTAGCCGCTCCGGTCGACAGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGACGTGCAACGGATGGATCCTTCAATATGCGTAAATGTCNNGCGCGTGAAGGTGGCCGTAGGCACANACAACACCCTTCTGTTTGAGGTTGCTCATCCTATATCAAATGTTCCTTTCCCTCTCTCTCTCTATCTAACTATCAGATTTTGAATCAGCAAATGGNACTCAAGGTTGAAGGATCAGGGGATCGATCAAGTCAAATCAAGGTGCCCGAAGCTGGATGAAAACTTGGCCGGCAGAATTCGGGGAGGGAANATTGTGGCAGGTTTCCGCGGTACAGACGGGCTTCCTTCCAGT] [+] EMBL AL695114 [GAATCCCGAGGTTAANTAAACATACTCTCTTAAGCATCAGTGCAGTCGCCATGGCCAGTTTATCGCATCGACAGTGTTCGGTGAAGTAGTTCAAGTGCGTCAAAATGAACGCCCTGCTCGCTCTGGTGGTTCTTGATGGCGGCGACGTCTAGCCGCTCCGGTCGACAGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGACGTGCAACGGATGGATCCTTCAATATGCGTAAATGTCNNGCGCGTGAAGGTGGCCGTAGGCACANACAACACCCTTCTGTTTGAGGTTGCTCATCCTATATCAAATGTTCCTTTCCCTCTCTCTCTCTATCTAACTATCAGATTTTGAATCAGCAAATGGNACTCAAGGTTGAAGGATCAGGGGATCGATCAAGTCAAATCAAGGTGCCCGAAGCTGGATGAAAACTTGGCCGGCAGAATTCGGGGAGGGAANATTGTGGCAGGTTTCCGCGGTACAGACGGGCTTCCTTCCAGT] consensusID : consensus_1519#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [CCCGAGGTTAATCTAAAACATTAACTCTCTTAGAGCCATCAGTGCAGTCGCCCAGTGGCCAGTTTACTCGCATTCGACCAGTGTTTCGGTGAAGTAGTTCAAGTGCATCAAAATGAACGCCCTGCTCGCTCTGGTGGTTCTGATGGCGGCGACCGTCTACGCTGCTCCGGTCGACAGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGGACGTGCAACCGGATGGTTCCTTCAACTATGCATTTGAATCAGCAAATGGAATCAAGGTTGAAGATCAGGGATCGATCAAGTCAATCAAGGTGCCGAAGCTGGATGAAACTGGCCGCCAGATCGGGGAGGAAGATGTGCAGGTTTCGGTACAGACGGGCTCCTTCCAGTATACCGCACCCGACGGTCAGGTCTACACGCTAAGATACATCGCGGACGAGAATGGATTCCAACCGCAGGCCGACCACCTCCCGGTCGCTCCCAGCGCCTAGGCG] [+] EMBL AL692565 [CCCGAGGTTAATCTAAAACATTAACTCTCTTAGAGCCATCAGTGCAGTCGCCCAGTGGCCAGTTTACTCGCATTCGACCAGTGTTTCGGTGAAGTAGTTCAAGTGCATCAAAATGAACGCCCTGCTCGCTCTGGTGGTTCTGATGGCGGCGACCGTCTACGCTGCTCCGGTCGACAGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGGACGTGCAACCGGATGGTTCCTTCAACTATGCATTTGAATCAGCAAATGGAATCAAGGTTGAAGATCAGGGATCGATCAAGTCAATCAAGGTGCCGAAGCTGGATGAAACTGGCCGCCAGATCGGGGAGGAAGATGTGCAGGTTTCGGTACAGACGGGCTCCTTCCAGTATACCGCACCCGACGGTCAGGTCTACACGCTAAGATACATCGCGGACGAGAATGGATTCCAACCGCAGGCCGACCACCTCCCGGTCGCTCCCAGCGCCTAGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1519#0 GAATCCCGAGGTTAANT--AAACAT--ACTCTCTTAAG--CATCAGTGCAGTCGCC--AT 52 consensus_1519#1 ----CCCGAGGTTAATCTAAAACATTAACTCTCTTAGAGCCATCAGTGCAGTCGCCCAGT 56 *********** ****** ********* **************** * consensus_1519#0 GGCCAGTTTA-TCGCAT-CGAC-AGTGTT-CGGTGAAGTAGTTCAAGTGCGTCAAAATGA 108 consensus_1519#1 GGCCAGTTTACTCGCATTCGACCAGTGTTTCGGTGAAGTAGTTCAAGTGCATCAAAATGA 116 ********** ****** **** ****** ******************** ********* consensus_1519#0 ACGCCCTGCTCGCTCTGGTGGTTCTTGATGGCGGCGAC-GTCTA-GCCGCTCCGGTCGAC 166 consensus_1519#1 ACGCCCTGCTCGCTCTGGTGGTTCT-GATGGCGGCGACCGTCTACGCTGCTCCGGTCGAC 175 ************************* ************ ***** ** ************ consensus_1519#0 AGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCG-ACGTGCAAC-GGATGGATCCTTC 224 consensus_1519#1 AGTGATGCCCAGGCACAGATCGTCAGCCAGACGTCGGACGTGCAACCGGATGGTTCCTTC 235 ************************************ ********* ****** ****** consensus_1519#0 AA-TATGCGTAAATGTCNNGCGCGTGAAGGTGGCCGTAGGCACANACAACACCCTTCTGT 283 consensus_1519#1 AACTATGCATTTGAATCAGCAAATGGAATCAAGGTTGAAGATCAGGGATCGATCAAGTCA 295 ** ***** * ** *** * * * ** * * * * consensus_1519#0 TTGAGGTTGCTCATCCTATATCAAATGTTCCTTTCCCTCTCTCTCTCTATCTAACTAT-C 342 consensus_1519#1 ATCAAGGTGCCGAAGCTGGATGAAA-----CTGGCCGCCAGATCGGGGAGGAAGATGTGC 350 * * * *** * ** ** *** ** ** * * * * * * consensus_1519#0 AGATTTTGAATCAGCAAATGGNACTCAAGGTTGAAGGATCAGGGGATC-GATCAAGTCAA 401 consensus_1519#1 AGGTTTCGGTACAGACGGGCTCCTTCCAGTATACCGCACCCGACGGTCAGGTCTA--CAC 408 ** *** * *** ** ** * * * * * * ** * ** * ** consensus_1519#0 ATCAAGGTGCCCGAAGCTGGATGAAAACTTGGCCGGCAGAATTCGGGGAGGGAANATTGT 461 consensus_1519#1 GCTAAGATACATCG---CGGACGAGAA--TGGATTCCA-ACCGCAGGCCGACCACCTCCC 462 *** * * *** ** ** *** ** * * ** * * * consensus_1519#0 GGCAGGTTTCCGCGGTACAGACGGGCTTCCTTCCAGT 498 consensus_1519#1 GGTCGCTCCCAGCG-CCTAGGCG-------------- 484 ** * * * *** ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||