These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCGCATCATCGCACCATTCGCCAAAAAGGAAACCCCCGCGGAGGAGACAAAACGCATTTTGGTCGCTCGTTCCGTTCGTCCTGTTGTAGTTTTCGCGAAATCGCCAGCGCGTGTATAGTGAGTGTGTGTGTTTGTGTGTGCGTACGGAAGGAAGGAATAAGAACACTGCCGGTGCCGGAAAAGCTGCGTCGCTCGACGTTTTCATCTACCCCTCTTTCCCGCGCGCTATCGTTTATTCGGTGATTTCGTTTCGTGCGTGTGCGTTTTATTGTTTCTTCTACGTTACTTTAACGAGTTCAGCAAACAGTGTGTACTGCTTACTGTAAGCAATGTCGACCGAAAAGGAAATGAATCCCGCGGAGGTGGAGCAGGAGGAACACGACAGCAACTATCAGCCACCGCCGCAGAAAACGATCGAGGAAATTATGGCCGCCGATGCGGAGGACGAAAGCTTGCGAAAGTACAAGGAGGCACTGCTCGGCGAGGCACAGGCGGAAAAGATTATCTTTGATGAATCCGATCCACGGAAGGTGATCGTGAAAAAGCTTGCCCTGCTGGTGGCCGATCGTGATCCGATGGAGCTCGATTTGACTGGCGATTTAACGAAGCTGAAAAAGAATGTGTTCGTCATTAAGGAAGGCATTCAGTACAAAATTCGCATCGATTTCGTAGTGCAGCGGGAGATTGTGCACG] [+] EMBL BM614939 [CCGCATCATCGCACCATTCGCCAAAAAGGAAACCCCCGCGGAGGAGACAAAACGCATTTTGGTCGCTCGTTCCGTTCGTCCTGTTGTAGTTTTCGCGAAATCGCCAGCGCGTGTATAGTGAGTGTGTGTGTTTGTGTGTGCGTACGGAAGGAAGGAATAAGAACACTGCCGGTGCCGGAAAAGCTGCGTCGCTCGACGTTTTCATCTACCCCTCTTTCCCGCGCGCTATCGTTTATTCGGTGATTTCGTTTCGTGCGTGTGCGTTTTATTGTTTCTTCTACGTTACTTTAACGAGTTCAGCAAACAGTGTGTACTGCTTACTGTAAGCAATGTCGACCGAAAAGGAAATGAATCCCGCGGAGGTGGAGCAGGAGGAACACGACAGCAACTATCAGCCACCGCCGCAGAAAACGATCGAGGAAATTATGGCCGCCGATGCGGAGGACGAAAGCTTGCGAAAGTACAAGGAGGCACTGCTCGGCGAGGCACAGGCGGAAAAGATTATCTTTGATGAATCCGATCCACGGAAGGTGATCGTGAAAAAGCTTGCCCTGCTGGTGGCCGATCGTGATCCGATGGAGCTCGATTTGACTGGCGATTTAACGAAGCTGAAAAAGAATGTGTTCGTCATTAAGGAAGGCATTCAGTACAAAATTCGCATCGATTTCGTAGTGCAGCGGGAGATTGTGCACG] consensusID : consensus_152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [CCGCCCACGCGTCCGGCCGGGCGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCACCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAATTAAATATATGTATTAC] [+] EMBL BM584467 [CCGCCCACGCGTCCGGCCGGGCGCAGCGGCCGGCGGTCCCGCCGGTAATGACAAAAACCGAAAGAGGAAATAAACGGGACACGTTCCGTGCACCGGCCACCAGCCTCTGTGATTGCTGTTGCAGAAGCAGAAGCAAAGTCGGCCGCCACAACGTGTCATCATTCCTCACCACAAATTAAATATATGTATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_152#0 CCGCATCATCGCACCATTCGCCAAAAAGGAAACCCCCGCGGAGGAGACAAAACGCATTTT 60 consensus_152#1 ------------------------------------------------------------ consensus_152#0 GGTCGCTCGTTCCGTTCGTCCTGTTGTAGTTTTCGCGAAATCGCCAGCGCGTGTATAGTG 120 consensus_152#1 ------------------------------------------------------------ consensus_152#0 AGTGTGTGTGTTTGTGTGTGCGTACGGAAGGAAGGAATAAGAACACTGCCGGTGCCGGAA 180 consensus_152#1 ------------------------------------------------------------ consensus_152#0 AAGCTGCGTCGCTCGACGTTTTCATCTACCCCTCTTTCCCGCGCGCTATCGTTTATTCGG 240 consensus_152#1 ------------------------------------------------------------ consensus_152#0 TGATTTCGTTTCGTGCGTGTGCGTTTTATTGTTTCTTCTACGTTACTTTAACGAGTTCAG 300 consensus_152#1 ---------------------------------CCGCCCACGC-GTCCGGCCGGGCGCAG 26 * * *** ** * *** consensus_152#0 CAAACAGTGTGTACTGCTTACTGTAAGCAATGTCGACCGAAAAGGAAATGAATCCCGCGG 360 consensus_152#1 CGGCCGGCG-GTCCCGCCGGTAATGACAAAAACCGA---AAGAGGAAATAAACGGGACAC 82 * * * * ** * ** * * ** *** ** ******* ** * consensus_152#0 AGGTGGAGCAGGAGGAACACGACAGCAACTATCAGCCACCGCCGCAGAAAACGATCGAGG 420 consensus_152#1 GTTCCGTGCACCGGCCAC----CAGCCTCTGTGA-TTGCTGTTGCAGAAGCAGA---AGC 134 * *** * ** **** ** * * * * ****** ** ** consensus_152#0 AAATTATGGCCGCCGATGCGGAGGACGAAAGCTTGCGA--AAGTACAAGGAGGCACTGCT 478 consensus_152#1 AAAGT-CGGCCGCCACAACGTGTCATCATTCCTCACCACAAATTAAATATATGTATTAC- 192 *** * ******* ** * * ** * * ** ** * * * * * * consensus_152#0 CGGCGAGGCACAGGCGGAAAAGATTATCTTTGATGAATCCGATCCACGGAAGGTGATCGT 538 consensus_152#1 ------------------------------------------------------------ consensus_152#0 GAAAAAGCTTGCCCTGCTGGTGGCCGATCGTGATCCGATGGAGCTCGATTTGACTGGCGA 598 consensus_152#1 ------------------------------------------------------------ consensus_152#0 TTTAACGAAGCTGAAAAAGAATGTGTTCGTCATTAAGGAAGGCATTCAGTACAAAATTCG 658 consensus_152#1 ------------------------------------------------------------ consensus_152#0 CATCGATTTCGTAGTGCAGCGGGAGATTGTGCACG 693 consensus_152#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||