cluster # 1547

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Anopheles gambiae
cluster # 1547 cluster # 1547 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1547#0 length = 819 sequences # 1

consensus_1547#1 length = 526 sequences # 1

consensusID : consensus_1547#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 819
fasta sequence

                              [AATCCCCCGAGGTTTANTGTCNCGGTAAAGGGCCANCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTAGTTTTAGGATTTTTTATTACACAGATGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCGCAGGCACAGCCATCTTCTGGCGCAGGCCCTCTACCTGGTGCGATCCGGACTCGTTCAACACGACGCGGGAGTGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGTGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATACACGGGTACGCCGGCTGGTGATGATACGCTACCGATTGCCGTTCTGCGAGATGCTTACATCAATCATGGCTGGTTACAACGTGTTCCTTGTCGATTGGGGCGCCCTCTGTCAGCCACCGTGCTATGTGGCGGCGGTGTACAATATACGGCCGGTGGCAACATGTCTTGGCGCCAGAGCTTGATGCACGTTAAGAGACCCTTGGATTGCCCGGTGGGAGATGACGCACCCTGCGTGGGACAACTCGCTCGGGGGCACAATAATCTGGGACTAATGGCAACTATCTCAAACTTCCGAATTGNNGCGAATTATTACACCGGATCCACCGCGGCCCCTATAAACGGGTGGACGTAACAACTTGATCCGGGAGCAGTTTTTGCAGGTCT]

[+] EMBL AL932508             [AATCCCCCGAGGTTTANTGTCNCGGTAAAGGGCCANCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTAGTTTTAGGATTTTTTATTACACAGATGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCGCAGGCACAGCCATCTTCTGGCGCAGGCCCTCTACCTGGTGCGATCCGGACTCGTTCAACACGACGCGGGAGTGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGTGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATACACGGGTACGCCGGCTGGTGATGATACGCTACCGATTGCCGTTCTGCGAGATGCTTACATCAATCATGGCTGGTTACAACGTGTTCCTTGTCGATTGGGGCGCCCTCTGTCAGCCACCGTGCTATGTGGCGGCGGTGTACAATATACGGCCGGTGGCAACATGTCTTGGCGCCAGAGCTTGATGCACGTTAAGAGACCCTTGGATTGCCCGGTGGGAGATGACGCACCCTGCGTGGGACAACTCGCTCGGGGGCACAATAATCTGGGACTAATGGCAACTATCTCAAACTTCCGAATTGNNGCGAATTATTACACCGGATCCACCGCGGCCCCTATAAACGGGTGGACGTAACAACTTGATCCGGGAGCAGTTTTTGCAGGTCT]




>consensus_1547#0
AATCCCCCGAGGTTTANTGTCNCGGTAAAGGGCCANCCATCGGTGTGTGGCTCCTGGTGT
GTGAGAAGTAGTTTTAGGATTTTTTATTACACAGATGTCCAAGTGATCCAACCCAAACGT
CCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAA
TGATTTACGCGCAGGCACAGCCATCTTCTGGCGCAGGCCCTCTACCTGGTGCGATCCGGA
CTCGTTCAACACGACGCGGGAGTGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTT
GTCCGGATGAGTGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTT
AAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAG
AACATCATACTGATACACGGGTACGCCGGCTGGTGATGATACGCTACCGATTGCCGTTCT
GCGAGATGCTTACATCAATCATGGCTGGTTACAACGTGTTCCTTGTCGATTGGGGCGCCC
TCTGTCAGCCACCGTGCTATGTGGCGGCGGTGTACAATATACGGCCGGTGGCAACATGTC
TTGGCGCCAGAGCTTGATGCACGTTAAGAGACCCTTGGATTGCCCGGTGGGAGATGACGC
ACCCTGCGTGGGACAACTCGCTCGGGGGCACAATAATCTGGGACTAATGGCAACTATCTC
AAACTTCCGAATTGNNGCGAATTATTACACCGGATCCACCGCGGCCCCTATAAACGGGTG
GACGTAACAACTTGATCCGGGAGCAGTTTTTGCAGGTCT

consensusID : consensus_1547#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [AGAATCCCCACGAGGTTCAGCACGGACCTGGTGGTGCCTGGTGGTCAGTCATGTCGTCTGTTGGCAGGTGTCGGGTAAAGGGCCAGCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTAGTTTTAGGATTTTTTATTACACAGTGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCGCAGGCACAGCATCTTCTGGCGCAGGCCCTCTACCTGGGCGATCCGGACTCGTTCAACACGACGCGGGAGGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATACACGGGTACGCCGGCGGTGATGATACGCTACCGATTGCCGTTCTGC]

[+] EMBL AL692689             [AGAATCCCCACGAGGTTCAGCACGGACCTGGTGGTGCCTGGTGGTCAGTCATGTCGTCTGTTGGCAGGTGTCGGGTAAAGGGCCAGCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTAGTTTTAGGATTTTTTATTACACAGTGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCGCAGGCACAGCATCTTCTGGCGCAGGCCCTCTACCTGGGCGATCCGGACTCGTTCAACACGACGCGGGAGGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATACACGGGTACGCCGGCGGTGATGATACGCTACCGATTGCCGTTCTGC]




>consensus_1547#1
AGAATCCCCACGAGGTTCAGCACGGACCTGGTGGTGCCTGGTGGTCAGTCATGTCGTCTG
TTGGCAGGTGTCGGGTAAAGGGCCAGCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGTA
GTTTTAGGATTTTTTATTACACAGTGTCCAAGTGATCCAACCCAAACGTCCAGCATGGTG
CTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACGCG
CAGGCACAGCATCTTCTGGCGCAGGCCCTCTACCTGGGCGATCCGGACTCGTTCAACACG
ACGCGGGAGGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATGAGGAC
ATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGATCATCGG
CTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATACTGATA
CACGGGTACGCCGGCGGTGATGATACGCTACCGATTGCCGTTCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1547#0      ---------------------------------------------------AATCCCCCG 9
consensus_1547#1      AGAATCCCCACGAGGTTCAGCACGGACCTGGTGGTGCCTGGTGGTCAGTCATGTCGTCTG 60
                                                                           **  * *

consensus_1547#0      AGGTTTANTGTCNCGGTAAAGGGCCANCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGT 69
consensus_1547#1      TTGGCAGGTGTCG-GGTAAAGGGCCAGCCATCGGTGTGTGGCTCCTGGTGTGTGAGAAGT 119
                        *     ****  ************ *********************************

consensus_1547#0      AGTTTTAGGATTTTTTATTACACAGATGTCCAAGTGATCCAACCCAAACGTCCAGCATGG 129
consensus_1547#1      AGTTTTAGGATTTTTTATTACACAG-TGTCCAAGTGATCCAACCCAAACGTCCAGCATGG 178
                      ************************* **********************************

consensus_1547#0      TGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACG 189
consensus_1547#1      TGCTGCTAGTGAAGATCGCACTCTGCTCGATGCTGGTCAGCGGTGGTGTAATGATTTACG 238
                      ************************************************************

consensus_1547#0      CGCAGGCACAGCCATCTTCTGGCGCAGGCCCTCTACCTGGTGCGATCCGGACTCGTTCAA 249
consensus_1547#1      CGCAGGCACAGC-ATCTTCTGGCGCAGGCCCTCTACCTGG-GCGATCCGGACTCGTTCAA 296
                      ************ *************************** *******************

consensus_1547#0      CACGACGCGGGAGTGACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATG 309
consensus_1547#1      CACGACGCGGGAG-GACTGCGTGTGGAAGCGAGGCAATGGGCAGGACGTTTGTCCGGATG 355
                      ************* **********************************************

consensus_1547#0      AGTGACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGAT 369
consensus_1547#1      AG-GACATTAGCATCTACCTCTACACGTCCGGCATCGTGAAGGATAAGTTTAAGTTCGAT 414
                      ** *********************************************************

consensus_1547#0      CATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATA 429
consensus_1547#1      CATCGGCTTCGGGACTGGTTGAACAACACCGAATGGGATCACTCAAAGGAGAACATCATA 474
                      ************************************************************

consensus_1547#0      CTGATACACGGGTACGCCGGCTGGTGATGATACGCTACCGATTGCCGTTCTGCGAGATGC 489
consensus_1547#1      CTGATACACGGGTACGCCGGC-GGTGATGATACGCTACCGATTGCCGTTCTGC------- 526
                      ********************* *******************************       

consensus_1547#0      TTACATCAATCATGGCTGGTTACAACGTGTTCCTTGTCGATTGGGGCGCCCTCTGTCAGC 549
consensus_1547#1      ------------------------------------------------------------
                                                                                  

consensus_1547#0      CACCGTGCTATGTGGCGGCGGTGTACAATATACGGCCGGTGGCAACATGTCTTGGCGCCA 609
consensus_1547#1      ------------------------------------------------------------
                                                                                  

consensus_1547#0      GAGCTTGATGCACGTTAAGAGACCCTTGGATTGCCCGGTGGGAGATGACGCACCCTGCGT 669
consensus_1547#1      ------------------------------------------------------------
                                                                                  

consensus_1547#0      GGGACAACTCGCTCGGGGGCACAATAATCTGGGACTAATGGCAACTATCTCAAACTTCCG 729
consensus_1547#1      ------------------------------------------------------------
                                                                                  

consensus_1547#0      AATTGNNGCGAATTATTACACCGGATCCACCGCGGCCCCTATAAACGGGTGGACGTAACA 789
consensus_1547#1      ------------------------------------------------------------
                                                                                  

consensus_1547#0      ACTTGATCCGGGAGCAGTTTTTGCAGGTCT 819
consensus_1547#1      ------------------------------