These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1262 fasta sequence [GCAGATNCCGNGGTTAATAGGGAACAGAACAAAAAACCCAGTTGCTTAAAGTATCTTACTCCTGCAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACGATGTGTGTTCAGCTTTTAGTAGCATNTCGGAGAAGTGGAGGACACAGCAGCACGAAGCAGAAGACAGGAACCGAGAAGTGGTAGAAGATTAGAATACCAAGCCCTACCACAAAACCCACTACTATCTGCAGGAGCTATTTGCGCGGGTCCCAGACNGGGAGAGCATGATTCAGTAAAGCANANAACGNTATACTANTCATTTNACGATGTAACAACTCNTAATNGTACCCCTATANNAGGGACCTAATACCCCANAATACAAGACAAAACAAGGGGAATCATGGTAAGGNACGGGCCATTGATTCCCTTAGGCTCCAATTTACACGAACACCAAGGAACACACACTTAAATTAACCAGCANACCACCCGAAACACGCCTCANCCANACACAACCCACAGCAGCATTGGCAACTCAAAAAATTGANCCACTAGCACTTATTNCCNACAAGTTAACAAAAACGGTAGGTCACGTCGGGTCTAGGAAGAGANCCGAAAAAGGNTGGGAGCAAACGGGGANTTCCGGCACTTAGGCACGGCGNGTNGGTATGGTAAACGGTAACGACCACAGNTTAGACACNAAAGCTTTACACCCNAAGNTANCGTTGGTTCTCACCCGTACTGAGGNAAACGNCAGNGGAGCAATTAGCCCAGTATCGGGTTCATTNTTCGCAAGAGATAACTNTAGAAGTCACAGNNCNGTATATGAGGCGAGTTAAAGAGAGTAAGCAANTCTTCCTCCGCTTAACCCNTTGGTCACAATTNATTGACATATGGGGNTGACATAGGGTANTAGACCCGGNATAAACGNNCANGGGGNGAACCCCCAAATNCTAANGCCANTANAAGGGGGATGTANCCCCAAACAAGAAACCAACAACNAGCAAGACCAAACACAATGTTAACGTCACAGANACAATGCATAACANNCANAATCCCGNTCGTGNGTGGTGACAACTTGGTTGGTTAGTGTACGACAGACACGGGTTATTTCCATNCGGCTTNAANCTGGNTCGATCACGNANACTATTTTGTGACCGGANAGNCATTAATAACGTCACTATACTATTANTAACCTANNTGTAGGGCTAAAATGGCATAACANTCTGCNAACTANTNAGNTTTNTTAGCGGNTNAGAACGCNA] [+] EMBL AL692713 [GCAGATNCCGNGGTTAATAGGGAACAGAACAAAAAACCCAGTTGCTTAAAGTATCTTACTCCTGCAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACGATGTGTGTTCAGCTTTTAGTAGCATNTCGGAGAAGTGGAGGACACAGCAGCACGAAGCAGAAGACAGGAACCGAGAAGTGGTAGAAGATTAGAATACCAAGCCCTACCACAAAACCCACTACTATCTGCAGGAGCTATTTGCGCGGGTCCCAGACNGGGAGAGCATGATTCAGTAAAGCANANAACGNTATACTANTCATTTNACGATGTAACAACTCNTAATNGTACCCCTATANNAGGGACCTAATACCCCANAATACAAGACAAAACAAGGGGAATCATGGTAAGGNACGGGCCATTGATTCCCTTAGGCTCCAATTTACACGAACACCAAGGAACACACACTTAAATTAACCAGCANACCACCCGAAACACGCCTCANCCANACACAACCCACAGCAGCATTGGCAACTCAAAAAATTGANCCACTAGCACTTATTNCCNACAAGTTAACAAAAACGGTAGGTCACGTCGGGTCTAGGAAGAGANCCGAAAAAGGNTGGGAGCAAACGGGGANTTCCGGCACTTAGGCACGGCGNGTNGGTATGGTAAACGGTAACGACCACAGNTTAGACACNAAAGCTTTACACCCNAAGNTANCGTTGGTTCTCACCCGTACTGAGGNAAACGNCAGNGGAGCAATTAGCCCAGTATCGGGTTCATTNTTCGCAAGAGATAACTNTAGAAGTCACAGNNCNGTATATGAGGCGAGTTAAAGAGAGTAAGCAANTCTTCCTCCGCTTAACCCNTTGGTCACAATTNATTGACATATGGGGNTGACATAGGGTANTAGACCCGGNATAAACGNNCANGGGGNGAACCCCCAAATNCTAANGCCANTANAAGGGGGATGTANCCCCAAACAAGAAACCAACAACNAGCAAGACCAAACACAATGTTAACGTCACAGANACAATGCATAACANNCANAATCCCGNTCGTGNGTGGTGACAACTTGGTTGGTTAGTGTACGACAGACACGGGTTATTTCCATNCGGCTTNAANCTGGNTCGATCACGNANACTATTTTGTGACCGGANAGNCATTAATAACGTCACTATACTATTANTAACCTANNTGTAGGGCTAAAATGGCATAACANTCTGCNAACTANTNAGNTTTNTTAGCGGNTNAGAACGCNA] consensusID : consensus_1549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCGGTTGCTAAAGTAACTTACTCCTGAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACGATGTGTGTTAGCTTTTAGTAGCATTCGGAGAAGGGAGGACACAGCAGCACGAAGCAGAAGAAGGAACCGAAAGTGGTAGAAGATTAGAATCCACCCCTCCACAAACCCCCTCTTTGCAGGACTTTTGCCGCTCCCAGCAGGAGGAATGATTAGAAACAAAACGATATATTTTTCGATGTAAACTTTTTGTCCCCTTTTAGCCTATCCCAATCAAAAAACAGGATTGTTGACGGCATGATCCTGCTCATTCACACACAGACACACATAATACACACACAGAAAGCTACAGAAACAACACATGAACTAAAATGAAATGCCTTTTCAAAGTACAAACGTGTTTGTTGAAGCGAAGTGGAAAGGATCGATGGAGGTGTGTAGTAGAAGTGAAAGTTCCGAGTAGTGTTCCGTGGGAGGGGGGCATGCGTTGTATTTGAAGTAGTGAGTCGTCGTTTTGCGTAGGTTTATCTCTCGTACCTTGTACATATGATTTGGTGCTGGTTTGCCCGTAACGGAGGGAACCATCTAGCTAGGGTGACCAAAAACAAAAAAACACAAAATCTCTTCTCGTGTGTTTGTGTGCGTGTCTGTTACCTGTCATTAGTGTAGTGGATGTGGAATAGATTAA] [+] EMBL BM623250 [CCGGTTGCTAAAGTAACTTACTCCTGAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACGATGTGTGTTAGCTTTTAGTAGCATTCGGAGAAGGGAGGACACAGCAGCACGAAGCAGAAGAAGGAACCGAAAGTGGTAGAAGATTAGAATCCACCCCTCCACAAACCCCCTCTTTGCAGGACTTTTGCCGCTCCCAGCAGGAGGAATGATTAGAAACAAAACGATATATTTTTCGATGTAAACTTTTTGTCCCCTTTTAGCCTATCCCAATCAAAAAACAGGATTGTTGACGGCATGATCCTGCTCATTCACACACAGACACACATAATACACACACAGAAAGCTACAGAAACAACACATGAACTAAAATGAAATGCCTTTTCAAAGTACAAACGTGTTTGTTGAAGCGAAGTGGAAAGGATCGATGGAGGTGTGTAGTAGAAGTGAAAGTTCCGAGTAGTGTTCCGTGGGAGGGGGGCATGCGTTGTATTTGAAGTAGTGAGTCGTCGTTTTGCGTAGGTTTATCTCTCGTACCTTGTACATATGATTTGGTGCTGGTTTGCCCGTAACGGAGGGAACCATCTAGCTAGGGTGACCAAAAACAAAAAAACACAAAATCTCTTCTCGTGTGTTTGTGTGCGTGTCTGTTACCTGTCATTAGTGTAGTGGATGTGGAATAGATTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1549#0 GCAGATNCCGNGGTTAATAGGGAACAGAACAAAAAACCCAGTTGCTTAAAGTATCTTACT 60 consensus_1549#1 -------------------------------------CCGGTTGCT-AAAGTAACTTACT 22 ** ****** ****** ****** consensus_1549#0 CCTGCAAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACG 120 consensus_1549#1 CCTG-AAACACGGATGGAGAAATAGAAGCAAACCAAAACACTGTAGATACGCCTTGAACG 81 **** ******************************************************* consensus_1549#0 ATGTGTGTTCAGCTTTTAGTAGCATNTCGGAGAAGTGGAGGACACAGCAGCACGAAGCAG 180 consensus_1549#1 ATGTGTGTT-AGCTTTTAGTAGCATT-CGGAGAAG-GGAGGACACAGCAGCACGAAGCAG 138 ********* *************** ******** ************************ consensus_1549#0 AAGACAGGAACCGAGAAGTGGTAGAAGATTAGAATACCAAGCCCTACCACAAAACCCACT 240 consensus_1549#1 AAGA-AGGAACCGA-AAGTGGTAGAAGATTAGAATCC---ACCCCTCCACAAACCCC--- 190 **** ********* ******************** * *** ******* *** consensus_1549#0 ACTATCTGCAGGAGCTATTTGCGCGGGTCCCAGACNGGGAGAGCATGATTCAGTAAAGCA 300 consensus_1549#1 -CTCTTTGCAGGA----CTTTTGCCGCTCCCAG-CAGGAGGA--ATGATT-----AGAAA 237 ** * ******* ** ** * ****** * ** ** ****** * * consensus_1549#0 NANAACGNTATACTANTCATTTNACGATGTAACAACTCNTAATNGTACCCCTATANNAGG 360 consensus_1549#1 CAAAACGATATA-------TTTTTCGATGTAA--ACTTTT---TGTCCCCTTTTAGCC-- 283 * **** **** *** ******** *** * ** *** * ** consensus_1549#0 GACCTAATACCCCANAATACAAGACAAAACAAGGGGAATCATGGTAAGGNACGGGCCATT 420 consensus_1549#1 -------TATCCCAA---TCAA---AAAACAGGATTGTTGACGGCATGATCCTGCTCATT 330 ** **** *** ****** * * * ** * * * * **** consensus_1549#0 GATTCCCTTAGGCTCCAATTTACACGAACACCAAGGAACACACACTTAAATTAACCAGCA 480 consensus_1549#1 CACACAC---AGACACACATAATACACACACAGAAAGCTACA-----GAAACAACACATG 382 * * * * ** * * ** **** * *** ** *** consensus_1549#0 NACCACCCGAAACACGCCTCANCCANACACAACCCACAGCAGCATTGGCAACTCAAAAAA 540 consensus_1549#1 AACTAAAATGAA-ATGCCTTTTCAAAGTACAAAC----GTGTTTGTTGAAGCGAAGTGGA 437 ** * ** * **** * * **** * * * * * * * * consensus_1549#0 TTGANCCACTAGCACTTATTNCCNACAAGTTAACAAAAACGGTAGGTCACGTCGGGTCTA 600 consensus_1549#1 AAGGATCGATGG-AGGTGTGTAGTAGAAGT----GAAAGTTCCGAGTAGTGTTCCG--TG 490 * * * * * * * * **** *** ** ** * * consensus_1549#0 GGAAGAGANCCGAAAAAGGNTGGGAGCAAACGGGGANTTCCGGCACTTAGGCACGGCGNG 660 consensus_1549#1 GGAGGGGGGCATGCGTTGTATTTGAAGTAGTGAGTCGTCGTTTTGCGTAGGTTTATCTCT 550 *** * * * * * ** * * * * * **** * consensus_1549#0 TNGGTATGGTAAACGGTAACGACCACAGNTTAGACACNAAAGCTTTACACCCNAAGNTAN 720 consensus_1549#1 CGTACCTTGTACATATGATTTGGTGCTGGTTTGCCCGTAACG----------GAGGGAAC 600 * *** * * * * ** * * ** * * * * consensus_1549#0 CGTTGGTTCTCACCCGTACTGAGGNAAACGNCAGNGGAGCAATTAGCCCAGTATCGGGTT 780 consensus_1549#1 CAT-----CTAGC---TAGGGTGACCAAAAACAAAAAAACACAAAATCTCTTCTCGTGTG 652 * * ** * ** * * ** ** * ** * * * *** ** consensus_1549#0 CAT-TNTTCGCAAGAGATAACTNTAGAAGTCACAGNNCNGTATATGAGGCGAGTTAAAGA 839 consensus_1549#1 TTTGTGTGCGTGTCTGTTACCTGTC---ATTAGTGTAGTGGATGTGGAATAGATTAA--- 706 * * * ** * ** ** * * * * * ** ** **** consensus_1549#0 GAGTAAGCAANTCTTCCTCCGCTTAACCCNTTGGTCACAATTNATTGACATATGGGGNTG 899 consensus_1549#1 ------------------------------------------------------------ consensus_1549#0 ACATAGGGTANTAGACCCGGNATAAACGNNCANGGGGNGAACCCCCAAATNCTAANGCCA 959 consensus_1549#1 ------------------------------------------------------------ consensus_1549#0 NTANAAGGGGGATGTANCCCCAAACAAGAAACCAACAACNAGCAAGACCAAACACAATGT 1019 consensus_1549#1 ------------------------------------------------------------ consensus_1549#0 TAACGTCACAGANACAATGCATAACANNCANAATCCCGNTCGTGNGTGGTGACAACTTGG 1079 consensus_1549#1 ------------------------------------------------------------ consensus_1549#0 TTGGTTAGTGTACGACAGACACGGGTTATTTCCATNCGGCTTNAANCTGGNTCGATCACG 1139 consensus_1549#1 ------------------------------------------------------------ consensus_1549#0 NANACTATTTTGTGACCGGANAGNCATTAATAACGTCACTATACTATTANTAACCTANNT 1199 consensus_1549#1 ------------------------------------------------------------ consensus_1549#0 GTAGGGCTAAAATGGCATAACANTCTGCNAACTANTNAGNTTTNTTAGCGGNTNAGAACG 1259 consensus_1549#1 ------------------------------------------------------------ consensus_1549#0 CNA 1262 consensus_1549#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||