cluster # 1562

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Anopheles gambiae
cluster # 1562 cluster # 1562 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1562#0 length = 670 sequences # 1

consensus_1562#1 length = 588 sequences # 1

consensusID : consensus_1562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCTTCCGCATACACCGCCCCCGCCACTGCCACCGATTGCAGCACCGCCAGCGCAATCGCCCCATCACGTCCAGACAGCCCGCCTCCTCTCCGGCCGGAGCGCTGATAAATGTAAGCTCTTCTTCTACTGCCGTCGCCGCCGCCACATCGTGTTCATCGTCGTCCGCGTCGGCTGCTGGCGGTGGTGCTGGTGCTGGTGGTGGCACTGGATCGGTGCCGGTGGCTTCGTAAGCCGCTGCCACCGCCCCGCCGTCGTCATCCTTCTTAGCATCCTTTCGGAAGTGGGAGGATGGACCTCAGGGGTGTGGTAGGGTTGCTGTACCAAACAACAACACCCACCCTCCCCATCCTCTCCAAAACCGTTTTCTCTCGGGCCCACCAAATTCTGCACTATGCTGCACTGCAACTTCTCCTGCACGAGTGCGCGATACTGTGGTAACATTGTTTTACTTCGGTAAGTTTAGTTTTAATTTAGTTCAAATGTACGCATAATGTGTATCCCCTGCATATAATATAATATCTCCTTACGGAGAGGAAAGAAGGGTTCGTGTAAAGAGTATATAGAAAGCGAAAAGCAAATAGGCTATAGGCGCAAGAGCGAGAGATTTATATTAGGGACACGCTCGCACCACCCGTCGGTGTGTGCGTGTG]

[+] EMBL BM646186             [CCGCCCACGCGTCCGCCCACGCTTCCGCATACACCGCCCCCGCCACTGCCACCGATTGCAGCACCGCCAGCGCAATCGCCCCATCACGTCCAGACAGCCCGCCTCCTCTCCGGCCGGAGCGCTGATAAATGTAAGCTCTTCTTCTACTGCCGTCGCCGCCGCCACATCGTGTTCATCGTCGTCCGCGTCGGCTGCTGGCGGTGGTGCTGGTGCTGGTGGTGGCACTGGATCGGTGCCGGTGGCTTCGTAAGCCGCTGCCACCGCCCCGCCGTCGTCATCCTTCTTAGCATCCTTTCGGAAGTGGGAGGATGGACCTCAGGGGTGTGGTAGGGTTGCTGTACCAAACAACAACACCCACCCTCCCCATCCTCTCCAAAACCGTTTTCTCTCGGGCCCACCAAATTCTGCACTATGCTGCACTGCAACTTCTCCTGCACGAGTGCGCGATACTGTGGTAACATTGTTTTACTTCGGTAAGTTTAGTTTTAATTTAGTTCAAATGTACGCATAATGTGTATCCCCTGCATATAATATAATATCTCCTTACGGAGAGGAAAGAAGGGTTCGTGTAAAGAGTATATAGAAAGCGAAAAGCAAATAGGCTATAGGCGCAAGAGCGAGAGATTTATATTAGGGACACGCTCGCACCACCCGTCGGTGTGTGCGTGTG]




>consensus_1562#0
CCGCCCACGCGTCCGCCCACGCTTCCGCATACACCGCCCCCGCCACTGCCACCGATTGCA
GCACCGCCAGCGCAATCGCCCCATCACGTCCAGACAGCCCGCCTCCTCTCCGGCCGGAGC
GCTGATAAATGTAAGCTCTTCTTCTACTGCCGTCGCCGCCGCCACATCGTGTTCATCGTC
GTCCGCGTCGGCTGCTGGCGGTGGTGCTGGTGCTGGTGGTGGCACTGGATCGGTGCCGGT
GGCTTCGTAAGCCGCTGCCACCGCCCCGCCGTCGTCATCCTTCTTAGCATCCTTTCGGAA
GTGGGAGGATGGACCTCAGGGGTGTGGTAGGGTTGCTGTACCAAACAACAACACCCACCC
TCCCCATCCTCTCCAAAACCGTTTTCTCTCGGGCCCACCAAATTCTGCACTATGCTGCAC
TGCAACTTCTCCTGCACGAGTGCGCGATACTGTGGTAACATTGTTTTACTTCGGTAAGTT
TAGTTTTAATTTAGTTCAAATGTACGCATAATGTGTATCCCCTGCATATAATATAATATC
TCCTTACGGAGAGGAAAGAAGGGTTCGTGTAAAGAGTATATAGAAAGCGAAAAGCAAATA
GGCTATAGGCGCAAGAGCGAGAGATTTATATTAGGGACACGCTCGCACCACCCGTCGGTG
TGTGCGTGTG

consensusID : consensus_1562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [AGAATCCCCGCGGTTAATTCGGTAAGTTTAGTTTCCNTTTAGTTCAAATGTTCGCATAATGTGTATCCCCTGCATATAATATAATATCTCCTTACGGAGAGGAAAGAAGGGTTCGTGTAAAGAGTATATAGAAAGCGAAAAGCAAATAGGCTATAGGCGCAAGAGCGAGAGATTTATATTAGGCACACGCTCGCACCACCCGTCGGTGTGTGCGTGTGTGTGTTAGAAATCAGCGAAGCTATAGGGAAAAGAGCAAAGAAAAGAAGCACTTAGGCGCAAAGAAAGGCGACACGAATTATATTGTATAGAAATGTATTACAGGGCTATTAGACTTGCTANNTTACCTCTTCTGTANATCGTTCAATTGTNATGAATTTCAAAGCCTCCAAAAGACTTGTATGAAATTACTAATTTGCAAATTACGCTACACCTTACGATTAATACTGCTACTACTACTACTACTACCACTACTACGCTTAGTCTCGAGACCCTGAAGCTCTCGTACGGCACATTTCAGTAATATGTAGATGGCGTNGCGACGAAATAGTGGATACTTGTTAGCAGAAAAGCGTTGAACAAAAGAGCAAG]

[+] EMBL AL692764             [AGAATCCCCGCGGTTAATTCGGTAAGTTTAGTTTCCNTTTAGTTCAAATGTTCGCATAATGTGTATCCCCTGCATATAATATAATATCTCCTTACGGAGAGGAAAGAAGGGTTCGTGTAAAGAGTATATAGAAAGCGAAAAGCAAATAGGCTATAGGCGCAAGAGCGAGAGATTTATATTAGGCACACGCTCGCACCACCCGTCGGTGTGTGCGTGTGTGTGTTAGAAATCAGCGAAGCTATAGGGAAAAGAGCAAAGAAAAGAAGCACTTAGGCGCAAAGAAAGGCGACACGAATTATATTGTATAGAAATGTATTACAGGGCTATTAGACTTGCTANNTTACCTCTTCTGTANATCGTTCAATTGTNATGAATTTCAAAGCCTCCAAAAGACTTGTATGAAATTACTAATTTGCAAATTACGCTACACCTTACGATTAATACTGCTACTACTACTACTACTACCACTACTACGCTTAGTCTCGAGACCCTGAAGCTCTCGTACGGCACATTTCAGTAATATGTAGATGGCGTNGCGACGAAATAGTGGATACTTGTTAGCAGAAAAGCGTTGAACAAAAGAGCAAG]




>consensus_1562#1
AGAATCCCCGCGGTTAATTCGGTAAGTTTAGTTTCCNTTTAGTTCAAATGTTCGCATAAT
GTGTATCCCCTGCATATAATATAATATCTCCTTACGGAGAGGAAAGAAGGGTTCGTGTAA
AGAGTATATAGAAAGCGAAAAGCAAATAGGCTATAGGCGCAAGAGCGAGAGATTTATATT
AGGCACACGCTCGCACCACCCGTCGGTGTGTGCGTGTGTGTGTTAGAAATCAGCGAAGCT
ATAGGGAAAAGAGCAAAGAAAAGAAGCACTTAGGCGCAAAGAAAGGCGACACGAATTATA
TTGTATAGAAATGTATTACAGGGCTATTAGACTTGCTANNTTACCTCTTCTGTANATCGT
TCAATTGTNATGAATTTCAAAGCCTCCAAAAGACTTGTATGAAATTACTAATTTGCAAAT
TACGCTACACCTTACGATTAATACTGCTACTACTACTACTACTACCACTACTACGCTTAG
TCTCGAGACCCTGAAGCTCTCGTACGGCACATTTCAGTAATATGTAGATGGCGTNGCGAC
GAAATAGTGGATACTTGTTAGCAGAAAAGCGTTGAACAAAAGAGCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1562#0      CCGCCCACGCGTCCGCCCACGCTTCCGCATACACCGCCCCCGCCACTGCCACCGATTGCA 60
consensus_1562#1      ------------------------------------------------------------
                                                                                  

consensus_1562#0      GCACCGCCAGCGCAATCGCCCCATCACGTCCAGACAGCCCGCCTCCTCTCCGGCCGGAGC 120
consensus_1562#1      -----------AGAATCCCCGCGGTTAATTCGGTAAGTTTAGTTTCCNTTTAGTTCAAAT 49
                                   **** ** *      * * *  **      * *  *   *    *  

consensus_1562#0      GCTGATAAA---TGTAAGCTCTTCTTCTACTGCCGTCGCCGCCGCCACATCGTGTTCATC 177
consensus_1562#1      GTTCGCATAATGTGTATCCCCTGCATATAATATAATATC--TCCTTACGGAGAGGAAAGA 107
                      * *   * *   ****  * ** * * ** *    *  *   *   **   * *   *  

consensus_1562#0      GTCGTCCGCGTCGGCTGCTGGCGGTGGTGCTGGTGCTGGTGGTGGCACTGGATCGGTGCC 237
consensus_1562#1      AGGGTTCGTGTAAAGAGTATATAGAAAGCGAAAAGCAAATAG-GCTATAGGCGCAAGAGC 166
                         ** ** **     *      *          **   * * *  *  **  *     *

consensus_1562#0      GGTGGCTTCGTA--AGCCGCTGCCACCGCCCCGCCGTCGTCATCCTTCTTAGCATCCTTT 295
consensus_1562#1      GAGAGATTTATATTAGGCACACGCTCGCACCACCCGTCGGTGTGTGCGTGTGTGTGTTAG 226
                      *   * **  **  ** * *   * *   **  ******   *     *  *  *  *  

consensus_1562#0      CGGA-AGTGGGAGGATGGACCTCAGGGGTGTGGTAGGGTTGCTGTACCAAACAACAACAC 354
consensus_1562#1      AAATCAGCGAAGCTATAGGGAAAAGAGCAAAGAAAAGAAGCACTTAGGCGCAAAGAAAGG 286
                           ** *     ** *     ** *    *  * *       **      ** **   

consensus_1562#0      CCACCCTCCCCATCCTCTCCAAAACCGTTTTCTCTCGGGCCCACCAAATTCTGCACTATG 414
consensus_1562#1      CGACACGAATTATATTGTATAGAAATGTATTA---CAGGGCTATTAGACTTGCTANNTTA 343
                      * ** *     **  * *  * **  ** **    * ** * *  * * *    *   * 

consensus_1562#0      CTGCA-CTGCAACTTCTCCTG----CACGAGTGCGCGATACTGTGGTAACATTGTTTTAC 469
consensus_1562#1      CCTCTTCTGTANATCGTTCAATTGTNATGAATTTCAAAGCCTCCAAAAGACTTGTATGAA 403
                      *  *  *** *  *  * *       * ** *     *  **     *   **** * * 

consensus_1562#0      TTCGGTAAGTTTAGTTTTAATTTAGTTCAAATGTACGCATAATG-TGTATCCCCTGCATA 528
consensus_1562#1      ATTACTAATTTG----CAAATTACGCTACACCTTACGATTAATACTGCTACTACTACTAC 459
                       *   *** **       ****  * *  *   ****  ****  **   *  ** *   

consensus_1562#0      TAATATAATATCTCCTTACGGAGAGGAAAGA--AGGGTTCGTGTAAAGAGTATATAGAAA 586
consensus_1562#1      TACTACCACTACTACGCTTAGTCTCGAGACCCTGAAGCTCTCGTACGGCACATTTC---A 516
                      ** **  *   ** *     *    ** *       * **  ***  *   ** *    *

consensus_1562#0      GCGAAAAGCAAATAGGCTATAGGCGCAAGAGCGAGAGATTTATATTAGGGACACGCTCGC 646
consensus_1562#1      GTAATATGTAGATGGCGTNGCGACGAAATAGTGGATACTTGTTAGCAGAAAAGCGTT-GA 575
                      *  * * * * ** *  *   * ** ** ** *     **  **  **  *  ** * * 

consensus_1562#0      ACCACCCGTCGGTGTGTGCGTGTG 670
consensus_1562#1      ACAAAAGAGCAAG----------- 588
                      ** *     *