cluster # 1572

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Anopheles gambiae
cluster # 1572 cluster # 1572 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1572#0 length = 719 sequences # 1

consensus_1572#1 length = 705 sequences # 1

consensusID : consensus_1572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 719
fasta sequence

                              [CCCCCGCAGGTTNACAATTACATTAACAATCATTCGGTGATNAGTTTGCGAAACGTCTTGCCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATCGTGGACTGATCGTTCGGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCGCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCTTCTGCCGCGACATGTCTCCATCGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGACGCCGTCGTCGCCGGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTGGTCGCCGTGAAAATGCTTCTAATGCACGGGTGAGTTGCATTATAACTACAAGCATACGTTTTTCCTTTCTTTAGTTTCAGCTAATGCCAGACGAACGATCGAATGACTGTTGCTTCGGAAAGGGACGGTCGCATTACAGATACCGACTTGGACATGATCCAGTCGGTCGGTTGCAGTTGTTCCATGGTGCTTCGGATAAGGCAACAACGGAGAAGCGCTCCGGACGCTCCGGAGAAGCTGATCGAGATCGGGAAGCGGGTA]

[+] EMBL AL692866             [CCCCCGCAGGTTNACAATTACATTAACAATCATTCGGTGATNAGTTTGCGAAACGTCTTGCCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATCGTGGACTGATCGTTCGGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCGCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCTTCTGCCGCGACATGTCTCCATCGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGACGCCGTCGTCGCCGGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTGGTCGCCGTGAAAATGCTTCTAATGCACGGGTGAGTTGCATTATAACTACAAGCATACGTTTTTCCTTTCTTTAGTTTCAGCTAATGCCAGACGAACGATCGAATGACTGTTGCTTCGGAAAGGGACGGTCGCATTACAGATACCGACTTGGACATGATCCAGTCGGTCGGTTGCAGTTGTTCCATGGTGCTTCGGATAAGGCAACAACGGAGAAGCGCTCCGGACGCTCCGGAGAAGCTGATCGAGATCGGGAAGCGGGTA]




>consensus_1572#0
CCCCCGCAGGTTNACAATTACATTAACAATCATTCGGTGATNAGTTTGCGAAACGTCTTG
CCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATCGTGGACTGATCGTTC
GGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTC
GTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTC
TCCTCCAGCGCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCTTCTGCCGCGACA
TGTCTCCATCGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGACGCCGTCGTCGCC
GGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAAT
TGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTGGTCGCCGTGAAAATGCTTCTAA
TGCACGGGTGAGTTGCATTATAACTACAAGCATACGTTTTTCCTTTCTTTAGTTTCAGCT
AATGCCAGACGAACGATCGAATGACTGTTGCTTCGGAAAGGGACGGTCGCATTACAGATA
CCGACTTGGACATGATCCAGTCGGTCGGTTGCAGTTGTTCCATGGTGCTTCGGATAAGGC
AACAACGGAGAAGCGCTCCGGACGCTCCGGAGAAGCTGATCGAGATCGGGAAGCGGGTA

consensusID : consensus_1572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 705
fasta sequence

                              [AAGAATCGCCACGAGGTGAAAGTTAAAAAGCATACAAAGCTCGCTCGCCGTTGGACGCTTGGACAATTACATTAACAATCATTCGGTGATCAGTTTGCGAAACGTCTTGCCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATACGTGGACTGATCGTTCGGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCGCCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCGTTCTGCCGCGACATGTCTCCATCGGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGAGCCGTCGGTCGCCGGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTTGTCGCCGGTGAAAATGCTTCTAATGCACGGGTGAGTTGCAGTTGATAGAGCTACGAGCATACGTNNGGAGTGTGCCTTGCTTNAGGTTTCAGCTAATGCCAGACGAACGATCGGAAATGACTGTTGCTTCGGAACGGGAGGGTCGCATTACAGGATACCCGNNTTGGACATGAGTCCAGGTCGGTCGGGNTGAA]

[+] EMBL BX469189             [AAGAATCGCCACGAGGTGAAAGTTAAAAAGCATACAAAGCTCGCTCGCCGTTGGACGCTTGGACAATTACATTAACAATCATTCGGTGATCAGTTTGCGAAACGTCTTGCCGCACGCCTGGTACAGGCCCTTCTTGTCCGCGTCGGTATCGATACGTGGACTGATCGTTCGGCAGCGTCAGCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGATCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCGCCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCGTTCTGCCGCGACATGTCTCCATCGGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGAGCCGTCGGTCGCCGGGCAGTATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAGCGCACAGCAAGAAACGTTACCGACAGTCTTTGTCGCCGGTGAAAATGCTTCTAATGCACGGGTGAGTTGCAGTTGATAGAGCTACGAGCATACGTNNGGAGTGTGCCTTGCTTNAGGTTTCAGCTAATGCCAGACGAACGATCGGAAATGACTGTTGCTTCGGAACGGGAGGGTCGCATTACAGGATACCCGNNTTGGACATGAGTCCAGGTCGGTCGGGNTGAA]




>consensus_1572#1
AAGAATCGCCACGAGGTGAAAGTTAAAAAGCATACAAAGCTCGCTCGCCGTTGGACGCTT
GGACAATTACATTAACAATCATTCGGTGATCAGTTTGCGAAACGTCTTGCCGCACGCCTG
GTACAGGCCCTTCTTGTCCGCGTCGGTATCGATACGTGGACTGATCGTTCGGCAGCGTCA
GCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGA
TCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCG
CCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCGTTCTGCCGCGACATGTCTCCA
TCGGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGAGCCGTCGGTCGCCGGGCAGT
ATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAAG
CGCACAGCAAGAAACGTTACCGACAGTCTTTGTCGCCGGTGAAAATGCTTCTAATGCACG
GGTGAGTTGCAGTTGATAGAGCTACGAGCATACGTNNGGAGTGTGCCTTGCTTNAGGTTT
CAGCTAATGCCAGACGAACGATCGGAAATGACTGTTGCTTCGGAACGGGAGGGTCGCATT
ACAGGATACCCGNNTTGGACATGAGTCCAGGTCGGTCGGGNTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1572#0      -----------------------------------------------CCCCCGCAGGTTN 13
consensus_1572#1      AAGAATCGCCACGAGGTGAAAGTTAAAAAGCATACAAAGCTCGCTCGCCGTTGGACGCTT 60
                                                                     **   * * * * 

consensus_1572#0      --ACAATTACATTAACAATCATTCGGTGATNAGTTTGCGAAACGTCTTGCCGCACGCCTG 71
consensus_1572#1      GGACAATTACATTAACAATCATTCGGTGATCAGTTTGCGAAACGTCTTGCCGCACGCCTG 120
                        **************************** *****************************

consensus_1572#0      GTACAGGCCCTTCTTGTCCGCGTCGGTATCGAT-CGTGGACTGATCGTTCGGCAGCGTCA 130
consensus_1572#1      GTACAGGCCCTTCTTGTCCGCGTCGGTATCGATACGTGGACTGATCGTTCGGCAGCGTCA 180
                      ********************************* **************************

consensus_1572#0      GCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGA 190
consensus_1572#1      GCATCATCACCTTCATCTGCGGGTAGTTGTGGTACGGCACAGTTCCGGTCGTCATCTCGA 240
                      ************************************************************

consensus_1572#0      TCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCG 250
consensus_1572#1      TCGCGGTAATGCCGAACGACTAGAAGCCGTATCCGTGGTCCCGCTCCGTCTCCTCCAGCG 300
                      ************************************************************

consensus_1572#0      C-ATCCAGCACGACGTGCCGATAAACGTGTGGTACACC-TTCTGCCGCGACATGTCTCCA 308
consensus_1572#1      CCATCCAGCACGACGTGCCGATAAACGTGTGGTACACCGTTCTGCCGCGACATGTCTCCA 360
                      * ************************************ *********************

consensus_1572#0      TCGG-TGGCGAGCCACGCGCTCATCCGCTATATTTAAGGACGCCGTCG-TCGCCGGGCAG 366
consensus_1572#1      TCGGGTGGCGAGCCACGCGCTCATCCGCTATATTTAAGGA-GCCGTCGGTCGCCGGGCAG 419
                      **** *********************************** ******* ***********

consensus_1572#0      TATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAA 426
consensus_1572#1      TATGATGGCCACCTTGATGTCCACGTAATGAGCAATGCGAAATGTGCTCTCAATTGGCAA 479
                      ************************************************************

consensus_1572#0      GCGCACAGCAAGAAACGTTACCGACAGTCTTGGTCGCCG-TGAAAATGCTTCTAATGCAC 485
consensus_1572#1      GCGCACAGCAAGAAACGTTACCGACAGTCTTTGTCGCCGGTGAAAATGCTTCTAATGCAC 539
                      ******************************* ******* ********************

consensus_1572#0      GGGTGAGTTGCATT----ATAACTACAAGCATACGTTT------TTCCTTTCTTTAG-TT 534
consensus_1572#1      GGGTGAGTTGCAGTTGATAGAGCTACGAGCATACGTNNGGAGTGTGCCTTGCTTNAGGTT 599
                      ************ *    * * **** *********        * **** *** ** **

consensus_1572#0      TCAGCTAATGCCAGACGAACGATCG--AATGACTGTTGCTTCGGAAAGGGACGGTCGCAT 592
consensus_1572#1      TCAGCTAATGCCAGACGAACGATCGGAAATGACTGTTGCTTCGGAACGGGAGGGTCGCAT 659
                      *************************  ******************* **** ********

consensus_1572#0      TACAG-ATACC-GACTTGGACATGA-TCCAG-TCGGTCGGTTGCAGTTGTTCCATGGTGC 648
consensus_1572#1      TACAGGATACCCGNNTTGGACATGAGTCCAGGTCGGTCGGGNTGAA-------------- 705
                      ***** ***** *  ********** ***** ********    *               

consensus_1572#0      TTCGGATAAGGCAACAACGGAGAAGCGCTCCGGACGCTCCGGAGAAGCTGATCGAGATCG 708
consensus_1572#1      ------------------------------------------------------------
                                                                                  

consensus_1572#0      GGAAGCGGGTA 719
consensus_1572#1      -----------