These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1576#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [CGCAGAATCCCCNCGAGTTTATTGGGCCCTGACCTTTTGTAAAAAATNAGAAGCTGCGGGGAATTGAGATGTATTTAACAAGACCTTTCAAACATATTTAATTGCATTAACCAAGCTACACCTACAACTGAATAGTGCTTTGCATGCGTCCATTTGTTCCATTCTGTCATTCAACGCTTTCTTTTCGACTTTCTCATGCAGCAACGCCAACGCACAAGCATCAGCAACACAGCAACACGCAACACTTTACCCCCGAACACCATGGACCAATCTNATTCTGCTAGGGCAATTCGGCTTTGCCTAANCAGCACACTAACCAACCAAACCAAGCAACCAACTAACTAACTTAAATTACTTACTACTAACACCAACCACCACATGGCCACACAGCTTAACACTTTCACCAATTCCANATCACATTAAACCACTTCACCAGGAAGTTGGCCGGCCTATTAGNGTTGCGGTNACCGCTAGGCGCACAGGTCCAGGCATTCACCGTTATCANTTAAAAACTTCAAATCCTTATTTCCCTANCCAACCCTCTTCNGGAAAGATGGCTGGTTNCAACAGGAAGGGCATTNGGCGCTNCTCGGATGAAAATTTATACCNGGAGNTTCACATTGGGTCNTCTCTAAACTCGGGTTTTNCCCGGCTCACAGGTTGGCACAACACTTATTCCCGGNNTCNCCGGGCATCTTAAAAGACCCCCAATCCCGGAACTCGGTCGGGTCGGTTAGGTTAGAATATACCGGAAAAACCGACATCTTAANAACAACCAAGGTTGGGCCACTTTA] [+] EMBL AL692874 [CGCAGAATCCCCNCGAGTTTATTGGGCCCTGACCTTTTGTAAAAAATNAGAAGCTGCGGGGAATTGAGATGTATTTAACAAGACCTTTCAAACATATTTAATTGCATTAACCAAGCTACACCTACAACTGAATAGTGCTTTGCATGCGTCCATTTGTTCCATTCTGTCATTCAACGCTTTCTTTTCGACTTTCTCATGCAGCAACGCCAACGCACAAGCATCAGCAACACAGCAACACGCAACACTTTACCCCCGAACACCATGGACCAATCTNATTCTGCTAGGGCAATTCGGCTTTGCCTAANCAGCACACTAACCAACCAAACCAAGCAACCAACTAACTAACTTAAATTACTTACTACTAACACCAACCACCACATGGCCACACAGCTTAACACTTTCACCAATTCCANATCACATTAAACCACTTCACCAGGAAGTTGGCCGGCCTATTAGNGTTGCGGTNACCGCTAGGCGCACAGGTCCAGGCATTCACCGTTATCANTTAAAAACTTCAAATCCTTATTTCCCTANCCAACCCTCTTCNGGAAAGATGGCTGGTTNCAACAGGAAGGGCATTNGGCGCTNCTCGGATGAAAATTTATACCNGGAGNTTCACATTGGGTCNTCTCTAAACTCGGGTTTTNCCCGGCTCACAGGTTGGCACAACACTTATTCCCGGNNTCNCCGGGCATCTTAAAAGACCCCCAATCCCGGAACTCGGTCGGGTCGGTTAGGTTAGAATATACCGGAAAAACCGACATCTTAANAACAACCAAGGTTGGGCCACTTTA] consensusID : consensus_1576#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [ACCTTTCAAACATATTTAATTGCATTAACCAAGCTACACCTACAACTGAATAGTGCTTTGATGCGTCATTTGTTCATTTGTATTAACGCTTTCTTTTCGACTTTCTATGCAGCAACGCAACGCACAAGATAGAAAAGAAACGAAACTTTACCCCCGAAAATGGACCATTTTTTGCTAGGAATTGTTTGCCTAAAGAACTAACCAACCAACCAACCACCACTACTAATACTACTACTACTACCACCACTGCAAAGACTTACATTACAATCAATAATAACACTACAGAGTGCGCTTAGGTGCGTACGCTAGGGAAGGTAGATACGTTTTTTAAACTCAACTCTTTTCCTACCACCTCTTAGAGTGTGTTTGAGATGCTTTGTATTTCGGTATGTTTTTATGTTCGTAGTGAAATTCGTTCGTTGACCACCGATGTGTGTGTTTTTCGAACGACTAAACAGTGCATTTC] [+] EMBL BX618103 [ACCTTTCAAACATATTTAATTGCATTAACCAAGCTACACCTACAACTGAATAGTGCTTTGATGCGTCATTTGTTCATTTGTATTAACGCTTTCTTTTCGACTTTCTATGCAGCAACGCAACGCACAAGATAGAAAAGAAACGAAACTTTACCCCCGAAAATGGACCATTTTTTGCTAGGAATTGTTTGCCTAAAGAACTAACCAACCAACCAACCACCACTACTAATACTACTACTACTACCACCACTGCAAAGACTTACATTACAATCAATAATAACACTACAGAGTGCGCTTAGGTGCGTACGCTAGGGAAGGTAGATACGTTTTTTAAACTCAACTCTTTTCCTACCACCTCTTAGAGTGTGTTTGAGATGCTTTGTATTTCGGTATGTTTTTATGTTCGTAGTGAAATTCGTTCGTTGACCACCGATGTGTGTGTTTTTCGAACGACTAAACAGTGCATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1576#0 CGCAGAATCCCCNCGAGTTTATTGGGCCCTGACCTTTTGTAAAAAATNAGAAGCTGCGGG 60 consensus_1576#1 ------------------------------------------------------------ consensus_1576#0 GAATTGAGATGTATTTAACAAGACCTTTCAAACATATTTAATTGCATTAACCAAGCTACA 120 consensus_1576#1 ----------------------ACCTTTCAAACATATTTAATTGCATTAACCAAGCTACA 38 ************************************** consensus_1576#0 CCTACAACTGAATAGTGCTTTGCATGCGTCCATTTGTTCCATTCTGTCATTCAACGCTTT 180 consensus_1576#1 CCTACAACTGAATAGTGCTTTG-ATGCGTC-ATTTGTTCATTTGTATTA----ACGCTTT 92 ********************** ******* ******** ** * * * ******* consensus_1576#0 CTTTTCGACTTTCTCATGCAGCAACGCCAACGCACAAGCATCAGCAACACAGCAACACGC 240 consensus_1576#1 CTTTTCGACTTTCT-ATGCAGCAACGC-AACGCACAAG-----ATAGAAAAGAAACG--- 142 ************** ************ ********** * * ** *** consensus_1576#0 AACACTTTACCCCCGAACACCATGGACCAATCTNATTCTGCTAGGGCAATTCGGCTTTGC 300 consensus_1576#1 -AAACTTTACCCCCGAAAA---TGGACCATTTTT----TGCTAGG--AATTG---TTTGC 189 * ************** * ******* * * ******* **** ***** consensus_1576#0 CTAANCAGCACACTAACCAACCAAACCAAGCAACCAACTAACTAACTTAAATTACTTACT 360 consensus_1576#1 CTAAAGA----ACTAACCAACCAA-CCAACCACC--ACTA-CTAA-------TACT-ACT 233 **** * ************* **** ** * **** **** **** *** consensus_1576#0 ACTAACACCAACCACCACATGGCCACACAGCTTAA-CACTTTCACCAATTCCANATCACA 419 consensus_1576#1 ACTACTACCA-CCACTGCAAAGACTTACATTACAATCAATAATAACACTACAGAGTGCGC 292 **** **** **** ** * * *** ** ** * * ** * * * consensus_1576#0 TTAAACCACTTCACCAGGAAGTTGGCCGGCCTATTAGNGTTGCGGTNACCGCTAGGCGCA 479 consensus_1576#1 TTAGGTGCGTACGCTAGGGAA--GGTAGATACGTT--TTTTAAACTCAACTCTTTTCCTA 348 *** * * * *** * ** * ** ** * * * ** * * consensus_1576#0 CAGGTCCAGGCATTCACCGTTATCANTTAAAAACTTCAAATCCTTATTTCCCTANCCAAC 539 consensus_1576#1 CCACCTC------TTAGAGT-GTGTTTGAGATGCTTTGTATTTCGGTATGTTTTT---AT 398 * * * * ** * * * * *** ** * * * * consensus_1576#0 CCTCTTCNGGAAAGATGGCTGGTTNCAACAGGAAGGGCATTNGGCGCTNCTCGGATGAAA 599 consensus_1576#1 GTTCGTAGTGAAATTCGTTCGTTGACCACCGATG------TGTGTGTTTTTCGAACGA-- 450 ** * **** * * * * ** * * * * * *** * ** consensus_1576#0 ATTTATACCNGGAGNTTCACATTGGGTCNTCTCTAAACTCGGGTTTTNCCCGGCTCACAG 659 consensus_1576#1 --CTAAACAGTGCATTTC------------------------------------------ 466 ** ** * *** consensus_1576#0 GTTGGCACAACACTTATTCCCGGNNTCNCCGGGCATCTTAAAAGACCCCCAATCCCGGAA 719 consensus_1576#1 ------------------------------------------------------------ consensus_1576#0 CTCGGTCGGGTCGGTTAGGTTAGAATATACCGGAAAAACCGACATCTTAANAACAACCAA 779 consensus_1576#1 ------------------------------------------------------------ consensus_1576#0 GGTTGGGCCACTTTA 794 consensus_1576#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||