cluster # 1598

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Anopheles gambiae
cluster # 1598 cluster # 1598 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1598#0 length = 689 sequences # 1

consensus_1598#1 length = 292 sequences # 1

consensusID : consensus_1598#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 689
fasta sequence

                              [CCGCCCACGCGTCCGATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACGATCCATTTGATGATGTAAGCTCTTCATCGGAAGTATCCCAGCCAAGTGGAAGCAGCGTAGCTGGGAAGAGTTCGACAAACATTGATCCTCTTAGCAAACCACTTTTGAATGTGATCGATGCAAAGCAGCTGAGAGATTTACAGATAATAGAGTACAATCCATTTAAGGAGGTAATCCCTTCACCGGAAGTATCCCAGCCAAGTCTGAGCAACGTGGCTGGGAAGATTTCTGCAAAGATTGATGCACCACGAAATCCACGTTTGAATGTCATCCATTCAAAGCAGCAGAGAGATTTAGGGACAATAGAGTACGATCTAGTTGATGAGGTAGGCCCTTCGCGAGAAGTATCCCAGCCAAGTGTGAGCAACATGTCTGGAAAGAGTTTTGCAAAAAATGATCCACCTAGAATGGCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGGTTTAGATACAATAGAGTACGATCTAGTTGACGAATTAAGCCCTTCACCGGCAGTATCTCAGCCAAGTGTGAGCATCGTGTCTGGAAAAGATTCTGTTAAAAATGACCCACCTAGAAAACCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGATGATGCACAACGTTTCTTCTCCGGCACCAAC]

[+] EMBL BM582076             [CCGCCCACGCGTCCGATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACGATCCATTTGATGATGTAAGCTCTTCATCGGAAGTATCCCAGCCAAGTGGAAGCAGCGTAGCTGGGAAGAGTTCGACAAACATTGATCCTCTTAGCAAACCACTTTTGAATGTGATCGATGCAAAGCAGCTGAGAGATTTACAGATAATAGAGTACAATCCATTTAAGGAGGTAATCCCTTCACCGGAAGTATCCCAGCCAAGTCTGAGCAACGTGGCTGGGAAGATTTCTGCAAAGATTGATGCACCACGAAATCCACGTTTGAATGTCATCCATTCAAAGCAGCAGAGAGATTTAGGGACAATAGAGTACGATCTAGTTGATGAGGTAGGCCCTTCGCGAGAAGTATCCCAGCCAAGTGTGAGCAACATGTCTGGAAAGAGTTTTGCAAAAAATGATCCACCTAGAATGGCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGGTTTAGATACAATAGAGTACGATCTAGTTGACGAATTAAGCCCTTCACCGGCAGTATCTCAGCCAAGTGTGAGCATCGTGTCTGGAAAAGATTCTGTTAAAAATGACCCACCTAGAAAACCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGATGATGCACAACGTTTCTTCTCCGGCACCAAC]




>consensus_1598#0
CCGCCCACGCGTCCGATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACGATCCAT
TTGATGATGTAAGCTCTTCATCGGAAGTATCCCAGCCAAGTGGAAGCAGCGTAGCTGGGA
AGAGTTCGACAAACATTGATCCTCTTAGCAAACCACTTTTGAATGTGATCGATGCAAAGC
AGCTGAGAGATTTACAGATAATAGAGTACAATCCATTTAAGGAGGTAATCCCTTCACCGG
AAGTATCCCAGCCAAGTCTGAGCAACGTGGCTGGGAAGATTTCTGCAAAGATTGATGCAC
CACGAAATCCACGTTTGAATGTCATCCATTCAAAGCAGCAGAGAGATTTAGGGACAATAG
AGTACGATCTAGTTGATGAGGTAGGCCCTTCGCGAGAAGTATCCCAGCCAAGTGTGAGCA
ACATGTCTGGAAAGAGTTTTGCAAAAAATGATCCACCTAGAATGGCACGTGTGAATGTGA
TCGATGCAAAGCAGCTGAGAGGTTTAGATACAATAGAGTACGATCTAGTTGACGAATTAA
GCCCTTCACCGGCAGTATCTCAGCCAAGTGTGAGCATCGTGTCTGGAAAAGATTCTGTTA
AAAATGACCCACCTAGAAAACCACGTGTGAATGTGATCGATGCAAAGCAGCTGAGAGATG
ATGCACAACGTTTCTTCTCCGGCACCAAC

consensusID : consensus_1598#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 292
fasta sequence

                              [CCTCCTTCGGTAGGGAGTACTCTTATTGTGGTCGAAGAATCACAGCCAAGTGAAAATTTGCAGGATTTATTAAGCGTTGTGATTCCCAAGGAAGANAACGAGGATCCGTTTGATGATTCAGACGCTTCNGAAGAACTTTTGGAACCGAGCACGAATGATCCGCTTGAGCAGGAGTGTTTCAGTGATATGACTGAAACAGAGAAACGGAANAATGAACAGAATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACAATCCATTTGATGATGTAAGCTCTTCATCGGAAG]

[+] EMBL BX623529             [CCTCCTTCGGTAGGGAGTACTCTTATTGTGGTCGAAGAATCACAGCCAAGTGAAAATTTGCAGGATTTATTAAGCGTTGTGATTCCCAAGGAAGANAACGAGGATCCGTTTGATGATTCAGACGCTTCNGAAGAACTTTTGGAACCGAGCACGAATGATCCGCTTGAGCAGGAGTGTTTCAGTGATATGACTGAAACAGAGAAACGGAANAATGAACAGAATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACAATCCATTTGATGATGTAAGCTCTTCATCGGAAG]




>consensus_1598#1
CCTCCTTCGGTAGGGAGTACTCTTATTGTGGTCGAAGAATCACAGCCAAGTGAAAATTTG
CAGGATTTATTAAGCGTTGTGATTCCCAAGGAAGANAACGAGGATCCGTTTGATGATTCA
GACGCTTCNGAAGAACTTTTGGAACCGAGCACGAATGATCCGCTTGAGCAGGAGTGTTTC
AGTGATATGACTGAAACAGAGAAACGGAANAATGAACAGAATCTGTTGTCCTTGTTAGGT
ATAGAGGAACCGGAGTACAATCCATTTGATGATGTAAGCTCTTCATCGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1598#0      CCGCCCACGCGTCCGATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACGATCCAT 60
consensus_1598#1      ------------------------------------------------------------
                                                                                  

consensus_1598#0      TTGATGATGTAAGCTCTTCATCGGAAGTATCCCAGCCAAGTGGAAGCAGCGTAGCTGGGA 120
consensus_1598#1      ------------------------------------------------------------
                                                                                  

consensus_1598#0      AGAGTTCGACAAACATTGATCCTCTTAGCAAACCACTTTTGAATGTGATCGATGCAAAGC 180
consensus_1598#1      ------------------------------------------------------------
                                                                                  

consensus_1598#0      AGCTGAGAGATTTACAGATAATAGAGTACAATCCATTTAAGGAGGTAATCCCTTCACCGG 240
consensus_1598#1      ------------------------------------------------------------
                                                                                  

consensus_1598#0      AAGTATCCCAGCCAAGTCTGAGCAACGTGGCTGGGAAGATTTCTGCAAAGATTGATGCAC 300
consensus_1598#1      --------------------CCTCCTTCGGTAGGGAGTACTCTTATTGTGGTCGAAGAAT 40
                                                  **  ****  * *  *     * * ** * * 

consensus_1598#0      CACG---AAATCCACGTTTGAATGTCATCCATTCAAAGCAGCAGAGAGATTTAGGGACAA 357
consensus_1598#1      CACAGCCAAGTGAAAATTTGCAGG--ATTTATT--AAGC-GTTGTGATTCCCAAGGAAGA 95
                      ***    ** *  *  **** * *  **  ***  **** *  * **     * ***  *

consensus_1598#0      TAGAGTACGATCTAGTTGATGAGGTAGGCCCTTCGCGAGAAGTATCCCAGCCAAGTGTGA 417
consensus_1598#1      NAACG-AGGATCCGTTTGATGATTCAGACGCTTCNGAAGAACTTTTGGAACCGAGCACGA 154
                       *  * * ****   *******   ** * ****   **** * *   * ** **   **

consensus_1598#0      GCAACATGTCTGGA-AAGAGTTTTGCAAAAA-ATGATCCACCTAGAATGGCACGTGTGAA 475
consensus_1598#1      ATGATCCGCTTGAGCAGGAGTGTTTCAGTGATATGACTGAAACAGA--GAAACGGAANAA 212
                         *   *  **   * **** ** **   * ****   *   ***  *  ***    **

consensus_1598#0      TGTGATCGATGCAAAGCAGCTGAGAGGTTTAGATACAATAGAGTACGATCTAGTTGACGA 535
consensus_1598#1      TGAACAGAATCTGTTGTCCTTGTTAGGTATAGAGGAACCGGAGTACAATCCATTTGATGA 272
                      **      **     *    **  **** ****   *   ****** *** * **** **

consensus_1598#0      ATTAAGCCCTTCACCGGCAGTATCTCAGCCAAGTGTGAGCATCGTGTCTGGAAAAGATTC 595
consensus_1598#1      TGTAAGCTCTTCATCGGAAG---------------------------------------- 292
                        ***** ***** *** **                                        

consensus_1598#0      TGTTAAAAATGACCCACCTAGAAAACCACGTGTGAATGTGATCGATGCAAAGCAGCTGAG 655
consensus_1598#1      ------------------------------------------------------------
                                                                                  

consensus_1598#0      AGATGATGCACAACGTTTCTTCTCCGGCACCAAC 689
consensus_1598#1      ----------------------------------