These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1601#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [AATCGCCCGAGGNCAAGGAAAAACGAGAACAGTGCAGTGGACTCAAACCAGCGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTAACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACATGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCTGATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA] [+] EMBL AL933774 [AATCGCCCGAGGNCAAGGAAAAACGAGAACAGTGCAGTGGACTCAAACCAGCGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTAACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACATGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCTGATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA] consensusID : consensus_1601#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGGGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTAACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAAGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCTGATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA] [+] EMBL BM647982 [CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGGGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTAACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAAGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCTGATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1601#0 ------AATCGCCCGAGGNCAAGGAAAA-ACGAGAACAGTGCA-GTGGACTCAAACCAGC 52 consensus_1601#1 CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGG 60 ** ***** *** ****** ******* *************** consensus_1601#0 GGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTA 112 consensus_1601#1 GGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTA 120 ****************************************** *** ************* consensus_1601#0 ACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACAT 172 consensus_1601#1 ACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAA 180 ******* ******************** ************************** *** consensus_1601#0 GAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACA 232 consensus_1601#1 GAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACA 240 ************************************************************ consensus_1601#0 CACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATT 292 consensus_1601#1 CACACAC----ATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATT 296 ******* **************** ******************************** consensus_1601#0 TACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTA 352 consensus_1601#1 TACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTA 356 ************************************************************ consensus_1601#0 GTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGG--GGGAAGTA 410 consensus_1601#1 GTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTA 416 ***************************************** ******** ******** consensus_1601#0 GGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCT 470 consensus_1601#1 GGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCT 476 **************************************************** ******* consensus_1601#0 GATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA 520 consensus_1601#1 GATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA------- 519 **** **** ********************************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||