cluster # 1614

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Anopheles gambiae
cluster # 1614 cluster # 1614 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1614#0 length = 710 sequences # 1

consensus_1614#1 length = 655 sequences # 1

consensusID : consensus_1614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 710
fasta sequence

                              [CCGCCCACGCGTCCGGCAACGGCACTGCAGCGAAGCAACAGTGCAATCGTCTGTCCCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGCTGCACCGTGTTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAAGCTGAGTGATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCATCCTGGAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGTGCCCCAGCTGCTGCAGCACCTGCAGGACACGCCCGACTTTTTACATCGAGATGAAGTGGGAGTTCACCAGCTGGGTGCCGCTAATGTCGCGCGTCTGCCCGAGCGACACGTACAAGGTGTTC]

[+] EMBL BM640885             [CCGCCCACGCGTCCGGCAACGGCACTGCAGCGAAGCAACAGTGCAATCGTCTGTCCCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGCTGCACCGTGTTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAAGCTGAGTGATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCATCCTGGAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGTGCCCCAGCTGCTGCAGCACCTGCAGGACACGCCCGACTTTTTACATCGAGATGAAGTGGGAGTTCACCAGCTGGGTGCCGCTAATGTCGCGCGTCTGCCCGAGCGACACGTACAAGGTGTTC]




>consensus_1614#0
CCGCCCACGCGTCCGGCAACGGCACTGCAGCGAAGCAACAGTGCAATCGTCTGTCCCAAT
CTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATC
GACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGC
TGCACCGTGTTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAAGCTGAGTGATAGT
GCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCA
TTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCA
TGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTG
TCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGA
CGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCAT
CCTGGAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGTGCCCCAGCTGCT
GCAGCACCTGCAGGACACGCCCGACTTTTTACATCGAGATGAAGTGGGAGTTCACCAGCT
GGGTGCCGCTAATGTCGCGCGTCTGCCCGAGCGACACGTACAAGGTGTTC

consensusID : consensus_1614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGGAAAAAAAAAACTTTCCTCGGACGCAAAAATCTATCCTGTTTTCCATAATTATTCTTTCCTCACTTCCCGGTCACTAGCAACGGCACTGCAGCGGAGCAACAGTGCAATCGTCTGTCCCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGCTGCACCGTATTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAGTGCTGAGTGATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCATCCTGGAAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGT]

[+] EMBL BM576055             [CCGGAAAAAAAAAACTTTCCTCGGACGCAAAAATCTATCCTGTTTTCCATAATTATTCTTTCCTCACTTCCCGGTCACTAGCAACGGCACTGCAGCGGAGCAACAGTGCAATCGTCTGTCCCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACAACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCGTACGCTGCACCGTATTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAGTGCTGAGTGATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCCCATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAAAACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAAACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGAATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGACCGCCATCCTGGAAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGT]




>consensus_1614#1
CCGGAAAAAAAAAACTTTCCTCGGACGCAAAAATCTATCCTGTTTTCCATAATTATTCTT
TCCTCACTTCCCGGTCACTAGCAACGGCACTGCAGCGGAGCAACAGTGCAATCGTCTGTC
CCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACA
ACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCG
TACGCTGCACCGTATTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAGTGCTGAGT
GATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCC
CATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAA
AACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAA
ACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGA
ATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGAC
CGCCATCCTGGAAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1614#0      ------------------------------------------------------------
consensus_1614#1      CCGGAAAAAAAAAACTTTCCTCGGACGCAAAAATCTATCCTGTTTTCCATAATTATTCTT 60
                                                                                  

consensus_1614#0      -----CCGCCCACGCGTCCGGCAACGGCACTGCAGCGAAGCAACAGTGCAATCGTCTGTC 55
consensus_1614#1      TCCTCACTTCCCGGTCACTAGCAACGGCACTGCAGCGGAGCAACAGTGCAATCGTCTGTC 120
                            *  **  *   *  ***************** **********************

consensus_1614#0      CCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACA 115
consensus_1614#1      CCAATCTTCCACCAACCGAAAATCAATCGGCAAGGCAAAGCTTCCAGTTACCGTGATACA 180
                      ************************************************************

consensus_1614#0      ACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCG 175
consensus_1614#1      ACATCGACAATCTCCGTCGCCAGTGCTTCCAGTGGTTTTGTTATTGTGGCCACTGTGGCG 240
                      ************************************************************

consensus_1614#0      TACGCTGCACCGTGTTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAA-GCTGAGT 234
consensus_1614#1      TACGCTGCACCGTATTTGATGCATTTGGCTGCCGAGATTTGCTAGAGTCGAGTGCTGAGT 300
                      ************* *************************************  *******

consensus_1614#0      GATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCC 294
consensus_1614#1      GATAGTGCGACGGTCCGGTCCGAAAATGATAACCATCGATAAGATCAAGGAAAACTTTCC 360
                      ************************************************************

consensus_1614#0      CATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAA 354
consensus_1614#1      CATCCATTGGCACGTGTGGAATAATGATTATCAGGAGCTGCAGCAAGCCATCGGCGAGAA 420
                      ************************************************************

consensus_1614#0      AACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAA 414
consensus_1614#1      AACGCATGACCTGGAAAAGCTGGATCCACGGGGTCGAACACCGCTAATGCTGGCGGTAAA 480
                      ************************************************************

consensus_1614#0      ACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGA 474
consensus_1614#1      ACTGTGTCACCTGGAATGCGTCAAAGCGCTGCTGGCCGCTAAATGTAACGCCAACGTCGA 540
                      ************************************************************

consensus_1614#0      ATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGAC 534
consensus_1614#1      ATGTGACGGATGGTCAGTCGTACAGGAAGCCGTCTGCTCCGGTGATCCGAACATTCTGAC 600
                      ************************************************************

consensus_1614#0      CGCCATCCTGGA-GGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGTGCCCC 593
consensus_1614#1      CGCCATCCTGGAAGGTGCGTGATCTGCAACGGCACATCAAGCGCGTCTCGCACGT----- 655
                      ************ ******************************************     

consensus_1614#0      AGCTGCTGCAGCACCTGCAGGACACGCCCGACTTTTTACATCGAGATGAAGTGGGAGTTC 653
consensus_1614#1      ------------------------------------------------------------
                                                                                  

consensus_1614#0      ACCAGCTGGGTGCCGCTAATGTCGCGCGTCTGCCCGAGCGACACGTACAAGGTGTTC 710
consensus_1614#1      ---------------------------------------------------------