These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 816 fasta sequence [CAGATNGCCCGAGGTTATACAGTTGTTCATTACATCCCGTTGAAGATCTTCTACCGAAAGCGATCATGTTGAATTGGAGAGTATTTCTGTTTGTTACAGTGACCGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCACGGCTGGTCAGGCACTTGAAGAATATTTTACAGCTGTGCCATCGGTGATAATTCTTCCGAACGAGAGCAAACAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGTGAGATTGGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGCGGCCTGATGGGCTTCTGTCGTAGCGAATTAGCGCATCGCGATAGCAGCGCCTGCACACAAAAGACCCCCAAACCCCCCAATNTGGCGGTGAAGTTGCCAACNTTGCGCAAATAAGCTTACAGGATTCACTCTGTACCNGCATTTGTCCAAACCGGCNTAAACAGCCCCGAAACGGCATCCCAATATACACCGNGAGAAGAGNATAACTGGTATGGGCATNACCGGATCAANTAACAAGATAAAAGACTTACCGCACATAAAACAATNTGGNCCCCACCGGCAAGGGTTCGNGCGACACCCAGNGCAACCNAAATAAACAAAAAAAAAAAAAAAAACAACAACAACAACACAACAACAACACAAAACAAAAAAAAAAAACAAACAACANNAAAAACAACAAAAAAAAACNCAACNNAACAAGACACNGAGCAACACGAANAAACNCAANNACNCACA] [+] EMBL AL693041 [CAGATNGCCCGAGGTTATACAGTTGTTCATTACATCCCGTTGAAGATCTTCTACCGAAAGCGATCATGTTGAATTGGAGAGTATTTCTGTTTGTTACAGTGACCGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCACGGCTGGTCAGGCACTTGAAGAATATTTTACAGCTGTGCCATCGGTGATAATTCTTCCGAACGAGAGCAAACAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGTGAGATTGGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGCGGCCTGATGGGCTTCTGTCGTAGCGAATTAGCGCATCGCGATAGCAGCGCCTGCACACAAAAGACCCCCAAACCCCCCAATNTGGCGGTGAAGTTGCCAACNTTGCGCAAATAAGCTTACAGGATTCACTCTGTACCNGCATTTGTCCAAACCGGCNTAAACAGCCCCGAAACGGCATCCCAATATACACCGNGAGAAGAGNATAACTGGTATGGGCATNACCGGATCAANTAACAAGATAAAAGACTTACCGCACATAAAACAATNTGGNCCCCACCGGCAAGGGTTCGNGCGACACCCAGNGCAACCNAAATAAACAAAAAAAAAAAAAAAAACAACAACAACAACACAACAACAACACAAAACAAAAAAAAAAAACAAACAACANNAAAAACAACAAAAAAAAACNCAACNNAACAAGACACNGAGCAACACGAANAAACNCAANNACNCACA] consensusID : consensus_1617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [GAGGCAAGAATCGGCACGNNGGAGTTGAATTGGAGAGTATTTCTCGTTTGTTACAGTGACCGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCACGGCTGGTCAGGCATTGAAGAATATTTTACAGCGTGCCATCGGTGATAATTCTTCCGACGAGAGCAAACCAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGTGAGATTGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGCGGCTGATGGGCTTCTGTCGTGCGAATTGGGATCGGATGCAGCGCTGCAACAAAGGCCCCCAAACGCCCATTGCGTGAGTGCAATTTGCGAATAGTTCAGGGTTATTGTTCCGCTTGATCAACCGCNTAACGCCGAACGGNATCCCATTCCCGGGGGGATACTGTNGGAGTAACGGTTCAGGTACAAGTAACAGNC] [+] EMBL BX468390 [GAGGCAAGAATCGGCACGNNGGAGTTGAATTGGAGAGTATTTCTCGTTTGTTACAGTGACCGTGTTTCTCTTTGTGCAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCCACGGCTGGTCAGGCATTGAAGAATATTTTACAGCGTGCCATCGGTGATAATTCTTCCGACGAGAGCAAACCAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAGGTGAGATTGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACTGCGGCTGATGGGCTTCTGTCGTGCGAATTGGGATCGGATGCAGCGCTGCAACAAAGGCCCCCAAACGCCCATTGCGTGAGTGCAATTTGCGAATAGTTCAGGGTTATTGTTCCGCTTGATCAACCGCNTAACGCCGAACGGNATCCCATTCCCGGGGGGATACTGTNGGAGTAACGGTTCAGGTACAAGTAACAGNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1617#0 CAGATNGCCCGAGGTTATACAGTTGTTCATTACATCCCGTTGAAGATCTTCTACCGAAAG 60 consensus_1617#1 -------------------------------------------GAGGCAAGAATCGGCA- 16 * * ** * consensus_1617#0 CGATCATGTTGAATTGGAGAGTATTTCT-GTTTGTTACAGTGACCGTGTTTCTCTTTGTG 119 consensus_1617#1 CGNNGGAGTTGAATTGGAGAGTATTTCTCGTTTGTTACAGTGACCGTGTTTCTCTTTGTG 76 ** ********************* ******************************* consensus_1617#0 CAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCC 179 consensus_1617#1 CAGTTCGACACTGCTGAATCCTCTCCGTTCAACGATTTACAACCAACTGGGCGACCGGCC 136 ************************************************************ consensus_1617#0 ACGGCTGGTCAGGCACTTGAAGAATATTTTACAGCTGTGCCATCGGTGATAATTCTTCCG 239 consensus_1617#1 ACGGCTGGTCAGGCA-TTGAAGAATATTTTACAGC-GTGCCATCGGTGATAATTCTTCCG 194 *************** ******************* ************************ consensus_1617#0 AACGAGAGCAAAC-AAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAG 298 consensus_1617#1 A-CGAGAGCAAACCAAGCGCCGGCAGCAGCGAGGAGCAGTTCCGGCCCTACCATGGGTAG 253 * *********** ********************************************** consensus_1617#0 GTGAGATTGGGCGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACT 358 consensus_1617#1 GTGAGATTGG-CGCCTATTACCATCACGTTCACCCTATGGTGCACACAACAAAGACTACT 312 ********** ************************************************* consensus_1617#0 GCGGCCTGATGGGCTTCTGTCGTAGCGAATTAGCGCATCGCGATAGCAGCGCCTGCACAC 418 consensus_1617#1 GCGGC-TGATGGGCTTCTGTCGT-GCGAATTGG--GATCG-GAT-GCAGCGCT---GCAA 363 ***** ***************** ******* * **** *** ******* ** consensus_1617#0 AAAAGACCCCCAAACCCCCCAATNTGGCGGTGAAGTTGCCAACNTTGCGCAAATAAGCTT 478 consensus_1617#1 CAAAGGCCCCCAAACGCCC-ATTGCGTGAGTGCAATT----------TGCGAATAG---T 409 **** ********* *** * * * *** * ** ** **** * consensus_1617#0 ACAGGATTCACTCTGTACCNGCATTTGTCCAAACCGGCNTAAACAGCCCCGAAACGGCAT 538 consensus_1617#1 TCAGGGTTA---TTGTTCCG---CTTGATCAACC--GCNTAA-----CGCCGAACGGNAT 456 **** ** *** ** *** *** * ****** * * ***** ** consensus_1617#0 CCCAATATACACCGNGAGAAGAGNATAACTGGTATGGGCATNACCGGATCAANTAACAAG 598 consensus_1617#1 CCCATT----CCCGGGGGGATACTGTNGGAGTAACGG----TTCAGGTACAAGTAACAGN 508 **** * *** * * * * * * * ** * ** *** ***** consensus_1617#0 ATAAAAGACTTACCGCACATAAAACAATNTGGNCCCCACCGGCAAGGGTTCGNGCGACAC 658 consensus_1617#1 C----------------------------------------------------------- 509 consensus_1617#0 CCAGNGCAACCNAAATAAACAAAAAAAAAAAAAAAAACAACAACAACAACACAACAACAA 718 consensus_1617#1 ------------------------------------------------------------ consensus_1617#0 CACAAAACAAAAAAAAAAAACAAACAACANNAAAAACAACAAAAAAAAACNCAACNNAAC 778 consensus_1617#1 ------------------------------------------------------------ consensus_1617#0 AAGACACNGAGCAACACGAANAAACNCAANNACNCACA 816 consensus_1617#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||