cluster # 1627

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Anopheles gambiae
cluster # 1627 cluster # 1627 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1627#0 length = 663 sequences # 1

consensus_1627#1 length = 624 sequences # 1

consensusID : consensus_1627#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [CCGCGAGCAGTGACGAGCTGGAAGACGGCTCACAGGAAAACACCGAAAGCGGTGACGAGTCTGGGACGAACAATTTGGTGGATGAAAGCACCGACAGTGTAGAAAACACTCCGCCCGCTCGTACAAGGCGGCTGTCCTCGCGGTCGGCCAGAAGCGCACAAACGAGCGACGCAACCCGCTCACGGAGGAAGGCAGACCACCACTATCAGCATTGCGATGCGTGCGGGAAGATGGTTTCGGATCTGAAAAGTCACATGCTCAGCCACACGAAGGAGAAACGGTTCTCCTGCCCGTACTGTGCCGTGACGATGACGTTCAAGTCGAATCTAAACATCCATATCAAGACGGTCCATTTGAAGGAGATTTCGAAATCGTGCGAGCTGTGCGGGCAAGGATTCGTCAATTACAATTCCTACAAGAACCATATGGCCTCGCAGCACGGAACGGGTGAGTACAGCTGTGAAACGTGTGCGAAAAGGTTTACGCATCTGCGAACGTACAACATGCACGTGCGCCGGCACCATAAAGCCGATGCGACGTACAAGAAAAAGAAGCAACTTTGTGGCACGTGCGGCGCCATGGTTACGCACATAGCGACGCACATGCTCACCCATACGCAGGAGAAGCGGTACGCCTGTCCGCACTGTCCGATCGAAATGGTGG]

[+] EMBL BM583838             [CCGCGAGCAGTGACGAGCTGGAAGACGGCTCACAGGAAAACACCGAAAGCGGTGACGAGTCTGGGACGAACAATTTGGTGGATGAAAGCACCGACAGTGTAGAAAACACTCCGCCCGCTCGTACAAGGCGGCTGTCCTCGCGGTCGGCCAGAAGCGCACAAACGAGCGACGCAACCCGCTCACGGAGGAAGGCAGACCACCACTATCAGCATTGCGATGCGTGCGGGAAGATGGTTTCGGATCTGAAAAGTCACATGCTCAGCCACACGAAGGAGAAACGGTTCTCCTGCCCGTACTGTGCCGTGACGATGACGTTCAAGTCGAATCTAAACATCCATATCAAGACGGTCCATTTGAAGGAGATTTCGAAATCGTGCGAGCTGTGCGGGCAAGGATTCGTCAATTACAATTCCTACAAGAACCATATGGCCTCGCAGCACGGAACGGGTGAGTACAGCTGTGAAACGTGTGCGAAAAGGTTTACGCATCTGCGAACGTACAACATGCACGTGCGCCGGCACCATAAAGCCGATGCGACGTACAAGAAAAAGAAGCAACTTTGTGGCACGTGCGGCGCCATGGTTACGCACATAGCGACGCACATGCTCACCCATACGCAGGAGAAGCGGTACGCCTGTCCGCACTGTCCGATCGAAATGGTGG]




>consensus_1627#0
CCGCGAGCAGTGACGAGCTGGAAGACGGCTCACAGGAAAACACCGAAAGCGGTGACGAGT
CTGGGACGAACAATTTGGTGGATGAAAGCACCGACAGTGTAGAAAACACTCCGCCCGCTC
GTACAAGGCGGCTGTCCTCGCGGTCGGCCAGAAGCGCACAAACGAGCGACGCAACCCGCT
CACGGAGGAAGGCAGACCACCACTATCAGCATTGCGATGCGTGCGGGAAGATGGTTTCGG
ATCTGAAAAGTCACATGCTCAGCCACACGAAGGAGAAACGGTTCTCCTGCCCGTACTGTG
CCGTGACGATGACGTTCAAGTCGAATCTAAACATCCATATCAAGACGGTCCATTTGAAGG
AGATTTCGAAATCGTGCGAGCTGTGCGGGCAAGGATTCGTCAATTACAATTCCTACAAGA
ACCATATGGCCTCGCAGCACGGAACGGGTGAGTACAGCTGTGAAACGTGTGCGAAAAGGT
TTACGCATCTGCGAACGTACAACATGCACGTGCGCCGGCACCATAAAGCCGATGCGACGT
ACAAGAAAAAGAAGCAACTTTGTGGCACGTGCGGCGCCATGGTTACGCACATAGCGACGC
ACATGCTCACCCATACGCAGGAGAAGCGGTACGCCTGTCCGCACTGTCCGATCGAAATGG
TGG

consensusID : consensus_1627#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [CCGAGGTTTAAGTGCCATGGTTACTGCACATAGCGACGCACTATGCTCACCCATACGCAGGAGAAGCGGTACGCCTGTCCGCACTGTCCGATCGAAATGGTGGACCGTGGGGAATCTTGATGCGCCATGTCCGGTCGGTCCATCTGCAGGATGTGAGGTGAAGTCGTGCGAAACGTGCGGCACTACGGTCTTCAAGTATCCCAGCTCGCACAGATCTCACATGCTCCGAGGTGCACGGCATTGGGAAAACGTTCGACTGCACATGTGTGCCANAAAGTTCAAACCACAACAGTTGGGCTTAAATCGCACATTGCCCGTGTGCACAGCAATGAGCGAAAGTTNGAGTGCGAAACGTGTGGCATGCTGTTTAAAGTGAAAGTCGGCCTTACGAAGCATCAGCTAGTGCACTCGACGGAGCAACCGTACGCGTGCAATCAATGTCCTGAAACGGTTTAAAACGTCTGCCATGGACGCAATTCACACCAACTGACCCACAGTGGCATAGTGTTTCCGATGTCCGNACTGTGAAAAATCGATACCGGTACAAAGATGTGCTTGCGCATTCACATTCGCGCGAGAAGCATCCCGNAGCNACAGGAGGAGCAAGATCGATAGCGCTGTGNC]

[+] EMBL AL693108             [CCGAGGTTTAAGTGCCATGGTTACTGCACATAGCGACGCACTATGCTCACCCATACGCAGGAGAAGCGGTACGCCTGTCCGCACTGTCCGATCGAAATGGTGGACCGTGGGGAATCTTGATGCGCCATGTCCGGTCGGTCCATCTGCAGGATGTGAGGTGAAGTCGTGCGAAACGTGCGGCACTACGGTCTTCAAGTATCCCAGCTCGCACAGATCTCACATGCTCCGAGGTGCACGGCATTGGGAAAACGTTCGACTGCACATGTGTGCCANAAAGTTCAAACCACAACAGTTGGGCTTAAATCGCACATTGCCCGTGTGCACAGCAATGAGCGAAAGTTNGAGTGCGAAACGTGTGGCATGCTGTTTAAAGTGAAAGTCGGCCTTACGAAGCATCAGCTAGTGCACTCGACGGAGCAACCGTACGCGTGCAATCAATGTCCTGAAACGGTTTAAAACGTCTGCCATGGACGCAATTCACACCAACTGACCCACAGTGGCATAGTGTTTCCGATGTCCGNACTGTGAAAAATCGATACCGGTACAAAGATGTGCTTGCGCATTCACATTCGCGCGAGAAGCATCCCGNAGCNACAGGAGGAGCAAGATCGATAGCGCTGTGNC]




>consensus_1627#1
CCGAGGTTTAAGTGCCATGGTTACTGCACATAGCGACGCACTATGCTCACCCATACGCAG
GAGAAGCGGTACGCCTGTCCGCACTGTCCGATCGAAATGGTGGACCGTGGGGAATCTTGA
TGCGCCATGTCCGGTCGGTCCATCTGCAGGATGTGAGGTGAAGTCGTGCGAAACGTGCGG
CACTACGGTCTTCAAGTATCCCAGCTCGCACAGATCTCACATGCTCCGAGGTGCACGGCA
TTGGGAAAACGTTCGACTGCACATGTGTGCCANAAAGTTCAAACCACAACAGTTGGGCTT
AAATCGCACATTGCCCGTGTGCACAGCAATGAGCGAAAGTTNGAGTGCGAAACGTGTGGC
ATGCTGTTTAAAGTGAAAGTCGGCCTTACGAAGCATCAGCTAGTGCACTCGACGGAGCAA
CCGTACGCGTGCAATCAATGTCCTGAAACGGTTTAAAACGTCTGCCATGGACGCAATTCA
CACCAACTGACCCACAGTGGCATAGTGTTTCCGATGTCCGNACTGTGAAAAATCGATACC
GGTACAAAGATGTGCTTGCGCATTCACATTCGCGCGAGAAGCATCCCGNAGCNACAGGAG
GAGCAAGATCGATAGCGCTGTGNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1627#0      CCGCGAGCAGTGACGAGCTGGAAGACGGCTCACAGGAAAACACCGAAAGCGGTGACGAGT 60
consensus_1627#1      -----------------CCGAGGTTTAAGTGCCATGGT--TACTGCACATAGCGACGCA- 40
                                       * *         *  ** *     ** * *    * ****   

consensus_1627#0      CTGGGACGAACAATTTGGTGGATGAAAGCACCGACAGTGTAGAAAACACTCCGCCCGCTC 120
consensus_1627#1      CTATGCTCACCCATACGCAGGAGAAGCGGTACGCCTGTC-------CGCACTGTCCGATC 93
                      **  *   * * **  *  ***  *  *   ** * **        * * * * *** **

consensus_1627#0      GTACAAGGCGGCTGTCCTCGCGGTCGGCCAGAAGCGC-ACAAACGAGCGACGCAAC--CC 177
consensus_1627#1      G----AAATGGTGGACCGTGGGGA-ATCTTGATGCGCCATGTCCGGTCGGTCCATCTGCA 148
                      *    *   **  * **  * **    *  ** **** *    **  **   ** *  * 

consensus_1627#0      GCTCACGGAGGAAGGCAGACCACCACTATCAGCATTGCGATGCGTGCGGGAAGATGGTTT 237
consensus_1627#1      GGATGTGAGGTGAAGTCGTGCGAAACGTGCGGCACTACGGTC--TTCAAGTATCCCAGCT 206
                      *     *  *  * *  *  *   **   * *** * ** *   * *  * *       *

consensus_1627#0      CGGATCTGAAAAGTCACATGCTC--AGCCACACGAAG--GAGAAACGGTTCTCCTGCCCG 293
consensus_1627#1      CGCAC---AGATCTCACATGCTCCGAGGTGCACGGCATTGGGAAAACGTTCGACTGCACA 263
                      ** *    * *  **********  **   ****     * ****  ****  **** * 

consensus_1627#0      TACTGTGCCGTGACGATGA---CGTTCAAGTCGAATCTAAACATCCATATCAAGACGGTC 350
consensus_1627#1      TG-TGTGCCANAAAGTTCAAACCACAACAGTTGGGCTTAAAT-CGCACATTGCCCGTGTG 321
                      *  ******   * * * *   *     *** *    ****    ** **       ** 

consensus_1627#0      CATTTGAAGGAGATTTCGAAATCGTGCGAGCTGTGCGGGCAAGGATTCGTCAATTACAAT 410
consensus_1627#1      CACAGCAATGAGCGAAAGTTNGAGTGCGAAACGTGTGG--CATGCTGTTTAAAGTGAAAG 379
                      **    ** ***     *     ******   *** **   * * *   * ** *  ** 

consensus_1627#0      TC--CTACAAGAACCATATGGCCTCGCAGC--ACGGAACGGGTGAGTACAGCTGTGAAAC 466
consensus_1627#1      TCGGCCTTACGAAGCATCAGCTAGTGCACTCGACGGAGCAACCGTACGCGTGCAATCAAT 439
                      **  *   * *** ***  *     ***    ***** *    *    *        ** 

consensus_1627#0      GTGTGCGAAAAGGTTTACGCATCTGCGAACGTACAACATGCACGTGCGCCGGCACCATAA 526
consensus_1627#1      GTCCTGAAACGGTTTAAAACGTCTGCCA-TGGACGCAATTCACACCAACTGAC-CCACAG 497
                      **     **  * ** *  * ***** *  * **   ** ***     * * * *** * 

consensus_1627#0      AGCCG--ATGCGACGTACAAGAAAAAGAAGCAACTTTGTGGCACGTGCGGCGCCATGGTT 584
consensus_1627#1      TGGCATAGTGTTTCCGATGTCCGNACTGTGAAAAATCGATACCGGTACAAAGATGTGCTT 557
                       * *    **   *  *       *    * **  * *   *  ** *   *   ** **

consensus_1627#0      ACGCACATAGCGACGCACATGCT-CACCCATACGCAGGAGAAGCGGTACGCCTGTCCGCA 643
consensus_1627#1      GCGCATTCACATTCGCGCGAGAAGCATCCCGNAGCNACAGGAGGAGCAAGATCGATAGCG 617
                       ****   *    *** *  *   ** **    **   ** **  * * *   *   ** 

consensus_1627#0      CTGTCCGATCGAAATGGTGG 663
consensus_1627#1      CTGTGNC------------- 624
                      ****