cluster # 1632

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Anopheles gambiae
cluster # 1632 cluster # 1632 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1632#0 length = 513 sequences # 1

consensus_1632#1 length = 245 sequences # 1

consensusID : consensus_1632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [CCGGCTAGGGTTTGTAATATCGCGGGCCAAGTTTCGCTTTAATACGCACAGCGTTGTGCGTCCAGTGCTTGTTTTTATTGGATCGATTCCCTTTGCAACCCATTAACGATCGGATCGGCCCAACAGCACTGCCTTCAAAATGCCGCGTATTATGATCAAGGGTGGTGTTTGGCGGAACACCGAGGATGAAATCCTCAAAGCCGCCGTCATGAAGTATGGCAAAAACCAATGGTCCCGTATTGCGTCGCTGCTGCATCGCAAGTCGGCGAAACAGTGCAAGGCACGTTGGTACGAGTGGCTGGATCCTAGCATTAAGAAGACGGAATGGTCCCGCGAGAAGGTCAAGAGAATCAGGAGCAGCAGCAGGATGAACCGATGGAACAAGACGACGAGGAGGAGGATGCTTCTAATGAATAAGGATATACCGACAACTACTGTTTACGGACAGTCTAATAAAGACACTCATCTTGTATCTTTACTATCTCTTCAATCGATGTAATAAATGATAGCGTA]

[+] EMBL BM607572             [CCGGCTAGGGTTTGTAATATCGCGGGCCAAGTTTCGCTTTAATACGCACAGCGTTGTGCGTCCAGTGCTTGTTTTTATTGGATCGATTCCCTTTGCAACCCATTAACGATCGGATCGGCCCAACAGCACTGCCTTCAAAATGCCGCGTATTATGATCAAGGGTGGTGTTTGGCGGAACACCGAGGATGAAATCCTCAAAGCCGCCGTCATGAAGTATGGCAAAAACCAATGGTCCCGTATTGCGTCGCTGCTGCATCGCAAGTCGGCGAAACAGTGCAAGGCACGTTGGTACGAGTGGCTGGATCCTAGCATTAAGAAGACGGAATGGTCCCGCGAGAAGGTCAAGAGAATCAGGAGCAGCAGCAGGATGAACCGATGGAACAAGACGACGAGGAGGAGGATGCTTCTAATGAATAAGGATATACCGACAACTACTGTTTACGGACAGTCTAATAAAGACACTCATCTTGTATCTTTACTATCTCTTCAATCGATGTAATAAATGATAGCGTA]




>consensus_1632#0
CCGGCTAGGGTTTGTAATATCGCGGGCCAAGTTTCGCTTTAATACGCACAGCGTTGTGCG
TCCAGTGCTTGTTTTTATTGGATCGATTCCCTTTGCAACCCATTAACGATCGGATCGGCC
CAACAGCACTGCCTTCAAAATGCCGCGTATTATGATCAAGGGTGGTGTTTGGCGGAACAC
CGAGGATGAAATCCTCAAAGCCGCCGTCATGAAGTATGGCAAAAACCAATGGTCCCGTAT
TGCGTCGCTGCTGCATCGCAAGTCGGCGAAACAGTGCAAGGCACGTTGGTACGAGTGGCT
GGATCCTAGCATTAAGAAGACGGAATGGTCCCGCGAGAAGGTCAAGAGAATCAGGAGCAG
CAGCAGGATGAACCGATGGAACAAGACGACGAGGAGGAGGATGCTTCTAATGAATAAGGA
TATACCGACAACTACTGTTTACGGACAGTCTAATAAAGACACTCATCTTGTATCTTTACT
ATCTCTTCAATCGATGTAATAAATGATAGCGTA

consensusID : consensus_1632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [GGCCAGAGAATGAAGGCGAAGGAAATGCTGTGGCGCAGGAACGGCAAAGCGAGAGCCCGGAGGAATCTGTCCCAGGGCAGGATAGTTGTGAAAGTGAGGAAAATACTTCCGAAGGTCAAGAGAATCAGGAGCAGCAGCAGGATGAACCGATGGAACAACACGACGACGAGGAGGATGCTTCGAATGAATAAGGATATACCGACAACTACTGTTTATGGACAGTCTAATAAAGACACTCATCTTGT]

[+] EMBL BM632345             [GGCCAGAGAATGAAGGCGAAGGAAATGCTGTGGCGCAGGAACGGCAAAGCGAGAGCCCGGAGGAATCTGTCCCAGGGCAGGATAGTTGTGAAAGTGAGGAAAATACTTCCGAAGGTCAAGAGAATCAGGAGCAGCAGCAGGATGAACCGATGGAACAACACGACGACGAGGAGGATGCTTCGAATGAATAAGGATATACCGACAACTACTGTTTATGGACAGTCTAATAAAGACACTCATCTTGT]




>consensus_1632#1
GGCCAGAGAATGAAGGCGAAGGAAATGCTGTGGCGCAGGAACGGCAAAGCGAGAGCCCGG
AGGAATCTGTCCCAGGGCAGGATAGTTGTGAAAGTGAGGAAAATACTTCCGAAGGTCAAG
AGAATCAGGAGCAGCAGCAGGATGAACCGATGGAACAACACGACGACGAGGAGGATGCTT
CGAATGAATAAGGATATACCGACAACTACTGTTTATGGACAGTCTAATAAAGACACTCAT
CTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1632#0      CCGGCTAGGGTTTGTAATATCGCGGGCCAAGTTTCGCTTTAATACGCACAGCGTTGTGCG 60
consensus_1632#1      ------------------------------------------------------------
                                                                                  

consensus_1632#0      TCCAGTGCTTGTTTTTATTGGATCGATTCCCTTTGCAACCCATTAACGATCGGATCGGCC 120
consensus_1632#1      ------------------------------------------------------------
                                                                                  

consensus_1632#0      CAACAGCACTGCCTTCAAAATGCCGCGTATTATGATCAAGGGTGGTGTTTGGCGGAACAC 180
consensus_1632#1      ------------------------------------------------------------
                                                                                  

consensus_1632#0      CGAGGATGAAATCCTCAAAGCCGCCGTCATGAAGTATGGCAAAAACCAATGGTCCCGTAT 240
consensus_1632#1      -------------------------------------------GGCCAGAGAATGAAGGC 17
                                                                   ***  *         

consensus_1632#0      TGCGTCGCTGCTGCATCGCAAGTCGGCGAAACAGTGCAAGGCACGTTGGTACGAGTGGCT 300
consensus_1632#1      GAAGGAAATGCTGTGGCGCAGG--AACGGCAAAGCG-AGAGCCCGGAGGAATCTGTCCCA 74
                         *    *****   **** *    **  * ** * *  ** **  ** *   **  * 

consensus_1632#0      GGATCCTAGCATTAAGAAGACGGAATGGTCCCGCGAGAAGGTCAAGAGAATCAGGAGCAG 360
consensus_1632#1      GGGCAGGATAGTTGTGAAAGTGAGGAAAATACTTCCGAAGGTCAAGAGAATCAGGAGCAG 134
                      **     *   **  ***   *         *    ************************

consensus_1632#0      CAGCAGGATGAACCGATGGAACAAGACGACGAGGAGGAGGATGCTTCTAATGAATAAGGA 420
consensus_1632#1      CAGCAGGATGAACCGATGGAACAACACGACGACGAGGAGGATGCTTCGAATGAATAAGGA 194
                      ************************ ******* ************** ************

consensus_1632#0      TATACCGACAACTACTGTTTACGGACAGTCTAATAAAGACACTCATCTTGTATCTTTACT 480
consensus_1632#1      TATACCGACAACTACTGTTTATGGACAGTCTAATAAAGACACTCATCTTGT--------- 245
                      ********************* *****************************         

consensus_1632#0      ATCTCTTCAATCGATGTAATAAATGATAGCGTA 513
consensus_1632#1      ---------------------------------