cluster # 1637

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Anopheles gambiae
cluster # 1637 cluster # 1637 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1637#0 length = 676 sequences # 1

consensus_1637#1 length = 635 sequences # 1

consensusID : consensus_1637#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 676
fasta sequence

                              [CCGCCCACGCGTCCGGTCAAGTAGCAGCGTCGCGTGTTATGCGTTTGGGCTGTGCTGTGGCTTGTTATCATCTTTAGCATTGCTTACCGCGACGGAGTGAAGTTATCTGTAGGTCAGAGCGAATCGCAACCGGACGGTGCACCGCAAACGACGGACCGAGCAGCACCTGCACCAGACCAGCAACAAACAGCAACGGGCGGCGGCGGCGGCGAGCAACAGAACGGTGGCAAAATGTTCGGTGGCAATAAAACGATGGACGACATTCCGCTGGAAAAGTTGCACGAGCTGGTGAAAAAGCGTACCAACATGCAGGTGATCCCGGGAGATCAGTGCGCCTCACAGTCGCAGTCCGTACCGCGGACGGAATCGGGCACGCGCAAGGTGTACGTCATGCGACACGGCGAGCGGATCGATTTTACCTTCGGCTCGTGGGTACCGTACTGCTTCGATGAGGCTGGCAACTACGTCCGCAAAGATCTGAACATGCCCACATCGTTGCCCACACGTAAACCCAGCCTCTGGCAGAAGGACTCACCACTGACGAACGTGGGCCGCTATCAGGCACGGCTCGTGGGCGAAGGGCTGAAGGATGCGGGGGTACAAATTGCGCGCGCGTACTGCTCGCCCTCGTTCCGCTGCATCCAGACGGCCACTTCAGTGCTGGAGGGGCTCGGAT]

[+] EMBL BM583593             [CCGCCCACGCGTCCGGTCAAGTAGCAGCGTCGCGTGTTATGCGTTTGGGCTGTGCTGTGGCTTGTTATCATCTTTAGCATTGCTTACCGCGACGGAGTGAAGTTATCTGTAGGTCAGAGCGAATCGCAACCGGACGGTGCACCGCAAACGACGGACCGAGCAGCACCTGCACCAGACCAGCAACAAACAGCAACGGGCGGCGGCGGCGGCGAGCAACAGAACGGTGGCAAAATGTTCGGTGGCAATAAAACGATGGACGACATTCCGCTGGAAAAGTTGCACGAGCTGGTGAAAAAGCGTACCAACATGCAGGTGATCCCGGGAGATCAGTGCGCCTCACAGTCGCAGTCCGTACCGCGGACGGAATCGGGCACGCGCAAGGTGTACGTCATGCGACACGGCGAGCGGATCGATTTTACCTTCGGCTCGTGGGTACCGTACTGCTTCGATGAGGCTGGCAACTACGTCCGCAAAGATCTGAACATGCCCACATCGTTGCCCACACGTAAACCCAGCCTCTGGCAGAAGGACTCACCACTGACGAACGTGGGCCGCTATCAGGCACGGCTCGTGGGCGAAGGGCTGAAGGATGCGGGGGTACAAATTGCGCGCGCGTACTGCTCGCCCTCGTTCCGCTGCATCCAGACGGCCACTTCAGTGCTGGAGGGGCTCGGAT]




>consensus_1637#0
CCGCCCACGCGTCCGGTCAAGTAGCAGCGTCGCGTGTTATGCGTTTGGGCTGTGCTGTGG
CTTGTTATCATCTTTAGCATTGCTTACCGCGACGGAGTGAAGTTATCTGTAGGTCAGAGC
GAATCGCAACCGGACGGTGCACCGCAAACGACGGACCGAGCAGCACCTGCACCAGACCAG
CAACAAACAGCAACGGGCGGCGGCGGCGGCGAGCAACAGAACGGTGGCAAAATGTTCGGT
GGCAATAAAACGATGGACGACATTCCGCTGGAAAAGTTGCACGAGCTGGTGAAAAAGCGT
ACCAACATGCAGGTGATCCCGGGAGATCAGTGCGCCTCACAGTCGCAGTCCGTACCGCGG
ACGGAATCGGGCACGCGCAAGGTGTACGTCATGCGACACGGCGAGCGGATCGATTTTACC
TTCGGCTCGTGGGTACCGTACTGCTTCGATGAGGCTGGCAACTACGTCCGCAAAGATCTG
AACATGCCCACATCGTTGCCCACACGTAAACCCAGCCTCTGGCAGAAGGACTCACCACTG
ACGAACGTGGGCCGCTATCAGGCACGGCTCGTGGGCGAAGGGCTGAAGGATGCGGGGGTA
CAAATTGCGCGCGCGTACTGCTCGCCCTCGTTCCGCTGCATCCAGACGGCCACTTCAGTG
CTGGAGGGGCTCGGAT

consensusID : consensus_1637#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGGTCAAGTAGCAGCGTCGCGTGTTATGCGTTTGGGCTGTGCTGTGGCTTGTTATCATCTTTAGCATTGCTTACCGCGACGGAGTGAAGTGTACGTGTTTGTATTATCTGTAGGTCAGAGCGAATCGCAACCGGACGGTGCACCGCAAACGACGGACCGAGCAGCACCTGCACCAGACCAGCAACAAACAGCAACGGGCGGCGGCGGCGGCGAGCAACAGAACGGTGGCAAAATGTTCGGTGGCAATAAAACGATTGACGACATTCCGCTGGAAAAGTTGCACGAGCTGGTGAAAAAGCGTACCAACATGCAGGTGATCCCGGGAGATCAGTGCGCCTCACAGTCGCAGTCCGTACCGCGGACGGAATCGGGCACGCGCAAGGTGTACGTCATGCGACACGGCGAGCGGATCGATTTTACCTTCGGCTCGTGGGTACCGTACTGCTTCGATGAGGCTGGCAACTACGTCCGCAAAGATCTGAACATGCCCACATCGTTGCCCACACGTAAACCCAGCCTCTGGCAGAAGGACTCACCATTGACGAACGTGGGCCGCTATCAGGCACGGCTCGTGGGCGAAGGGCTGAAGGATGCGGGGGTACAAATTGCGCGCGCGTACTGCTCGCCCTCGTTC]

[+] EMBL BM634862             [CCGGTCAAGTAGCAGCGTCGCGTGTTATGCGTTTGGGCTGTGCTGTGGCTTGTTATCATCTTTAGCATTGCTTACCGCGACGGAGTGAAGTGTACGTGTTTGTATTATCTGTAGGTCAGAGCGAATCGCAACCGGACGGTGCACCGCAAACGACGGACCGAGCAGCACCTGCACCAGACCAGCAACAAACAGCAACGGGCGGCGGCGGCGGCGAGCAACAGAACGGTGGCAAAATGTTCGGTGGCAATAAAACGATTGACGACATTCCGCTGGAAAAGTTGCACGAGCTGGTGAAAAAGCGTACCAACATGCAGGTGATCCCGGGAGATCAGTGCGCCTCACAGTCGCAGTCCGTACCGCGGACGGAATCGGGCACGCGCAAGGTGTACGTCATGCGACACGGCGAGCGGATCGATTTTACCTTCGGCTCGTGGGTACCGTACTGCTTCGATGAGGCTGGCAACTACGTCCGCAAAGATCTGAACATGCCCACATCGTTGCCCACACGTAAACCCAGCCTCTGGCAGAAGGACTCACCATTGACGAACGTGGGCCGCTATCAGGCACGGCTCGTGGGCGAAGGGCTGAAGGATGCGGGGGTACAAATTGCGCGCGCGTACTGCTCGCCCTCGTTC]




>consensus_1637#1
CCGGTCAAGTAGCAGCGTCGCGTGTTATGCGTTTGGGCTGTGCTGTGGCTTGTTATCATC
TTTAGCATTGCTTACCGCGACGGAGTGAAGTGTACGTGTTTGTATTATCTGTAGGTCAGA
GCGAATCGCAACCGGACGGTGCACCGCAAACGACGGACCGAGCAGCACCTGCACCAGACC
AGCAACAAACAGCAACGGGCGGCGGCGGCGGCGAGCAACAGAACGGTGGCAAAATGTTCG
GTGGCAATAAAACGATTGACGACATTCCGCTGGAAAAGTTGCACGAGCTGGTGAAAAAGC
GTACCAACATGCAGGTGATCCCGGGAGATCAGTGCGCCTCACAGTCGCAGTCCGTACCGC
GGACGGAATCGGGCACGCGCAAGGTGTACGTCATGCGACACGGCGAGCGGATCGATTTTA
CCTTCGGCTCGTGGGTACCGTACTGCTTCGATGAGGCTGGCAACTACGTCCGCAAAGATC
TGAACATGCCCACATCGTTGCCCACACGTAAACCCAGCCTCTGGCAGAAGGACTCACCAT
TGACGAACGTGGGCCGCTATCAGGCACGGCTCGTGGGCGAAGGGCTGAAGGATGCGGGGG
TACAAATTGCGCGCGCGTACTGCTCGCCCTCGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1637#0      CCGCCCACGCGTCCGGTCAAGTAGCAGCGTCGCGTGTTATGCGTTTGGGCTGTGCTGTGG 60
consensus_1637#1      ------------CCGGTCAAGTAGCAGCGTCGCGTGTTATGCGTTTGGGCTGTGCTGTGG 48
                                  ************************************************

consensus_1637#0      CTTGTTATCATCTTTAGCATTGCTTACCGCGACGGAGTGAAGT--------------TAT 106
consensus_1637#1      CTTGTTATCATCTTTAGCATTGCTTACCGCGACGGAGTGAAGTGTACGTGTTTGTATTAT 108
                      *******************************************              ***

consensus_1637#0      CTGTAGGTCAGAGCGAATCGCAACCGGACGGTGCACCGCAAACGACGGACCGAGCAGCAC 166
consensus_1637#1      CTGTAGGTCAGAGCGAATCGCAACCGGACGGTGCACCGCAAACGACGGACCGAGCAGCAC 168
                      ************************************************************

consensus_1637#0      CTGCACCAGACCAGCAACAAACAGCAACGGGCGGCGGCGGCGGCGAGCAACAGAACGGTG 226
consensus_1637#1      CTGCACCAGACCAGCAACAAACAGCAACGGGCGGCGGCGGCGGCGAGCAACAGAACGGTG 228
                      ************************************************************

consensus_1637#0      GCAAAATGTTCGGTGGCAATAAAACGATGGACGACATTCCGCTGGAAAAGTTGCACGAGC 286
consensus_1637#1      GCAAAATGTTCGGTGGCAATAAAACGATTGACGACATTCCGCTGGAAAAGTTGCACGAGC 288
                      **************************** *******************************

consensus_1637#0      TGGTGAAAAAGCGTACCAACATGCAGGTGATCCCGGGAGATCAGTGCGCCTCACAGTCGC 346
consensus_1637#1      TGGTGAAAAAGCGTACCAACATGCAGGTGATCCCGGGAGATCAGTGCGCCTCACAGTCGC 348
                      ************************************************************

consensus_1637#0      AGTCCGTACCGCGGACGGAATCGGGCACGCGCAAGGTGTACGTCATGCGACACGGCGAGC 406
consensus_1637#1      AGTCCGTACCGCGGACGGAATCGGGCACGCGCAAGGTGTACGTCATGCGACACGGCGAGC 408
                      ************************************************************

consensus_1637#0      GGATCGATTTTACCTTCGGCTCGTGGGTACCGTACTGCTTCGATGAGGCTGGCAACTACG 466
consensus_1637#1      GGATCGATTTTACCTTCGGCTCGTGGGTACCGTACTGCTTCGATGAGGCTGGCAACTACG 468
                      ************************************************************

consensus_1637#0      TCCGCAAAGATCTGAACATGCCCACATCGTTGCCCACACGTAAACCCAGCCTCTGGCAGA 526
consensus_1637#1      TCCGCAAAGATCTGAACATGCCCACATCGTTGCCCACACGTAAACCCAGCCTCTGGCAGA 528
                      ************************************************************

consensus_1637#0      AGGACTCACCACTGACGAACGTGGGCCGCTATCAGGCACGGCTCGTGGGCGAAGGGCTGA 586
consensus_1637#1      AGGACTCACCATTGACGAACGTGGGCCGCTATCAGGCACGGCTCGTGGGCGAAGGGCTGA 588
                      *********** ************************************************

consensus_1637#0      AGGATGCGGGGGTACAAATTGCGCGCGCGTACTGCTCGCCCTCGTTCCGCTGCATCCAGA 646
consensus_1637#1      AGGATGCGGGGGTACAAATTGCGCGCGCGTACTGCTCGCCCTCGTTC------------- 635
                      ***********************************************             

consensus_1637#0      CGGCCACTTCAGTGCTGGAGGGGCTCGGAT 676
consensus_1637#1      ------------------------------