cluster # 164

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Anopheles gambiae
cluster # 164 cluster # 164 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_164#0 length = 625 sequences # 1

consensus_164#1 length = 517 sequences # 1

consensusID : consensus_164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAAAAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTCCGTTGGTAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCAAATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTTAAATACTTCCCCGAAAATGTTGCAGAA]

[+] EMBL BX617121             [GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAAAAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTCCGTTGGTAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCAAATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTTAAATACTTCCCCGAAAATGTTGCAGAA]




>consensus_164#0
GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAA
AAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGA
CTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCAT
CAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGT
ATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAG
ATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGC
ACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTCCGTTGGTA
GATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCAAA
TTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTAT
TTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTTAA
ATACTTCCCCGAAAATGTTGCAGAA

consensusID : consensus_164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 517
fasta sequence

                              [ATCGCCGAGGNTAAAGCAATAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGGTAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCAAATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC]

[+] EMBL AL932303             [ATCGCCGAGGNTAAAGCAATAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCATCAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGGTAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCAAATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC]




>consensus_164#1
ATCGCCGAGGNTAAAGCAATAGCAGTACGGTCCAGTCTGCGCAACGACTCTACGATGTGA
GATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCATCAAAACGGCTTTG
GAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGTATCATTTCGGTGC
AGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAGATCGTCCCGCTAA
CGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGCACAGTGACCATCG
TATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGGTAGATTGGTGTTG
GAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCAAATTAAGGTAAAT
GTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGTATTTTTTTACTTC
TTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_164#0      GATAGAGAGTGCAGAAGCGTTACGTGAGGTTGGCTGTCCGAGCTAACGGCCGCGGCCAAA 60
consensus_164#1      ------------------------------------------------------------
                                                                                 

consensus_164#0      AAATTCATTTGAACGGACACATCCGAAACAAAAAGCAGTACGGTCCAGTCTGCGCAACGA 120
consensus_164#1      ------------ATCGCCGAGGNTAAAGCAATA-GCAGTACGGTCCAGTCTGCGCAACGA 47
                                 *  * *       ** *** * **************************

consensus_164#0      CTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCATGCAT 180
consensus_164#1      CTCTACGATGTGAGATGAGTTTCGGCAGTCCGATGATCAGCCAACGATTTGAGCAAGCAT 107
                     ******************************************************* ****

consensus_164#0      CAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGT 240
consensus_164#1      CAAAACGGCTTTGGAGTGATCTGGTGACATCGACGATGCAACAGGGCTTTCCTTTCATGT 167
                     ************************************************************

consensus_164#0      ATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAG 300
consensus_164#1      ATCATTTCGGTGCAGCTGCTGCGCTAAGGTGGGCAGAAAGTTGAACCGTTTTCCTCGAAG 227
                     ************************************************************

consensus_164#0      ATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGC 360
consensus_164#1      ATCGTCCCGCTAACGGTGATCATGTGTGCTGCACAATGTTGAAATGTAACGCTTTCGAGC 287
                     ************************************************************

consensus_164#0      ACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTT--CCGTTGG 418
consensus_164#1      ACAGTGACCATCGTATGCAGATCGATATGTTTGTTTCGTAATACGTTTTTTTCCCGTTGG 347
                     ***************************************************  *******

consensus_164#0      TAGATTGGTGCTGGAGCAGTTTTATTTGAACCAGAAATTCGGCAAACAAACGTAACACCA 478
consensus_164#1      TAGATTGGTGTTGGAGCAGTTTTATTTGAACAAGAAATTCGGCAAACAAACGTAACACCA 407
                     ********** ******************** ****************************

consensus_164#0      AATTGAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGT 538
consensus_164#1      AATTAAGGTAAATGTTTGCCAACGACAGCTTTTTGTGGATTTGTTTTGGCTTTTTTGGGT 467
                     **** *******************************************************

consensus_164#0      ATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACCAATTTTTTTT 598
consensus_164#1      ATTTTTTTACTTCTTTACTGATTGATTCAAAGCGTTGTTAGGACTCAACC---------- 517
                     **************************************************          

consensus_164#0      AAATACTTCCCCGAAAATGTTGCAGAA 625
consensus_164#1      ---------------------------