cluster # 1646

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1646 cluster # 1646 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1646#0 length = 649 sequences # 1

consensus_1646#1 length = 521 sequences # 1

consensusID : consensus_1646#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [ATCGCCCGAGGGTGAAACAGTAGTTTGACGTGTTTCAGTAGTGTTCAGCGAGTAGAAAAACTTATTGTTTTGAATAAAAAATCAAGCCAAAATCAAGTTTAAGCAATTGCATCAAAATGACTAGTTTCTCCTTTACGCAGTGCGCGTTGGTGCTTGTGATCGTGGCGTGTGGTGCTACCGCCAAACCCCAGAATCAGTACGCGCACTCTAGCTACAACAAGAATACGGGAGTGCGTAATACGTCCGTTGGCCATCGGCTGACTAATCAGCACCAGCAGTACCAGCAGCAACAGCACCAGCAGCACCAGCAGCACCAGCATCAGCAGCAGCAACAGCACCAATCGCAGAACCATTTTGCACACCAGCATCAGCCGCAAGCCTTACGTGCACCGTTGCTGCCCCCGCATAACCCAACTCAGTTTAGCCAAAGATTACAGCAACCGTTCCCGAACGCAATCCGTCCTTTCGTACCAATCACCTCCTACAGCAATGACGTTTCGTACGATGGCAGCTATTCGTACGCGTATACGACCGGCGACGGACAGCAGCAGCAGGCACAGGGATATTTGAAAAATGCCGGCCGTAAGGACCTGGAGGCACAGGCCGTGCAGGGCTCGTACTCGTACACCTCTCCCGAGGTCAGCTGATT]

[+] EMBL AL932673             [ATCGCCCGAGGGTGAAACAGTAGTTTGACGTGTTTCAGTAGTGTTCAGCGAGTAGAAAAACTTATTGTTTTGAATAAAAAATCAAGCCAAAATCAAGTTTAAGCAATTGCATCAAAATGACTAGTTTCTCCTTTACGCAGTGCGCGTTGGTGCTTGTGATCGTGGCGTGTGGTGCTACCGCCAAACCCCAGAATCAGTACGCGCACTCTAGCTACAACAAGAATACGGGAGTGCGTAATACGTCCGTTGGCCATCGGCTGACTAATCAGCACCAGCAGTACCAGCAGCAACAGCACCAGCAGCACCAGCAGCACCAGCATCAGCAGCAGCAACAGCACCAATCGCAGAACCATTTTGCACACCAGCATCAGCCGCAAGCCTTACGTGCACCGTTGCTGCCCCCGCATAACCCAACTCAGTTTAGCCAAAGATTACAGCAACCGTTCCCGAACGCAATCCGTCCTTTCGTACCAATCACCTCCTACAGCAATGACGTTTCGTACGATGGCAGCTATTCGTACGCGTATACGACCGGCGACGGACAGCAGCAGCAGGCACAGGGATATTTGAAAAATGCCGGCCGTAAGGACCTGGAGGCACAGGCCGTGCAGGGCTCGTACTCGTACACCTCTCCCGAGGTCAGCTGATT]




>consensus_1646#0
ATCGCCCGAGGGTGAAACAGTAGTTTGACGTGTTTCAGTAGTGTTCAGCGAGTAGAAAAA
CTTATTGTTTTGAATAAAAAATCAAGCCAAAATCAAGTTTAAGCAATTGCATCAAAATGA
CTAGTTTCTCCTTTACGCAGTGCGCGTTGGTGCTTGTGATCGTGGCGTGTGGTGCTACCG
CCAAACCCCAGAATCAGTACGCGCACTCTAGCTACAACAAGAATACGGGAGTGCGTAATA
CGTCCGTTGGCCATCGGCTGACTAATCAGCACCAGCAGTACCAGCAGCAACAGCACCAGC
AGCACCAGCAGCACCAGCATCAGCAGCAGCAACAGCACCAATCGCAGAACCATTTTGCAC
ACCAGCATCAGCCGCAAGCCTTACGTGCACCGTTGCTGCCCCCGCATAACCCAACTCAGT
TTAGCCAAAGATTACAGCAACCGTTCCCGAACGCAATCCGTCCTTTCGTACCAATCACCT
CCTACAGCAATGACGTTTCGTACGATGGCAGCTATTCGTACGCGTATACGACCGGCGACG
GACAGCAGCAGCAGGCACAGGGATATTTGAAAAATGCCGGCCGTAAGGACCTGGAGGCAC
AGGCCGTGCAGGGCTCGTACTCGTACACCTCTCCCGAGGTCAGCTGATT

consensusID : consensus_1646#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [CCCAGGCTTAGTTGGCCATCGGCTGACTAATCAGCACAGACAGTNNCAGCAGCAACAGCACCAGCAGCACCAGCAGCACCAGCATCAGCAGCAGCAACAGCACCAATCGCAGAACCATTTTGCACACCAGCATCAGCCGCAAGCCTTACGTGCACCGTTGCTGCCCCCGCATAACCCAACTCAGTTTAGCCAAAGATTACAGCAACCGTTCCCGAACGCAATCCGTCCTTTCGTACCAATCACCTCCTACAGCAATGACGTTTCGTACGATGGCAGCTATTCGTACGCGTATACGACCGGCGACGGACAGCAGCAGCAGGCACAGGGATATTTGAACAAATGCCGGCCGTAAGGACCTGGAGGCACAGGCCGTGCAGGGCTCGTACTCGTACACCTCTCCCGAGGGTCAGCTGATTACGGTGACCTACATTGCAGATGAGAACGGTTTCCGTGCGGAAGGTGCTCATCTGCCACACAACACGATCCCGGAGGCAATCCAGAAATCGCTTGCCCTGATCGCC]

[+] EMBL AL693224             [CCCAGGCTTAGTTGGCCATCGGCTGACTAATCAGCACAGACAGTNNCAGCAGCAACAGCACCAGCAGCACCAGCAGCACCAGCATCAGCAGCAGCAACAGCACCAATCGCAGAACCATTTTGCACACCAGCATCAGCCGCAAGCCTTACGTGCACCGTTGCTGCCCCCGCATAACCCAACTCAGTTTAGCCAAAGATTACAGCAACCGTTCCCGAACGCAATCCGTCCTTTCGTACCAATCACCTCCTACAGCAATGACGTTTCGTACGATGGCAGCTATTCGTACGCGTATACGACCGGCGACGGACAGCAGCAGCAGGCACAGGGATATTTGAACAAATGCCGGCCGTAAGGACCTGGAGGCACAGGCCGTGCAGGGCTCGTACTCGTACACCTCTCCCGAGGGTCAGCTGATTACGGTGACCTACATTGCAGATGAGAACGGTTTCCGTGCGGAAGGTGCTCATCTGCCACACAACACGATCCCGGAGGCAATCCAGAAATCGCTTGCCCTGATCGCC]




>consensus_1646#1
CCCAGGCTTAGTTGGCCATCGGCTGACTAATCAGCACAGACAGTNNCAGCAGCAACAGCA
CCAGCAGCACCAGCAGCACCAGCATCAGCAGCAGCAACAGCACCAATCGCAGAACCATTT
TGCACACCAGCATCAGCCGCAAGCCTTACGTGCACCGTTGCTGCCCCCGCATAACCCAAC
TCAGTTTAGCCAAAGATTACAGCAACCGTTCCCGAACGCAATCCGTCCTTTCGTACCAAT
CACCTCCTACAGCAATGACGTTTCGTACGATGGCAGCTATTCGTACGCGTATACGACCGG
CGACGGACAGCAGCAGCAGGCACAGGGATATTTGAACAAATGCCGGCCGTAAGGACCTGG
AGGCACAGGCCGTGCAGGGCTCGTACTCGTACACCTCTCCCGAGGGTCAGCTGATTACGG
TGACCTACATTGCAGATGAGAACGGTTTCCGTGCGGAAGGTGCTCATCTGCCACACAACA
CGATCCCGGAGGCAATCCAGAAATCGCTTGCCCTGATCGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1646#0      ATCGCCCGAGGGTGAAACAGTAGTTTGACGTGTTTCAGTAGTGTTCAGCGAGTAGAAAAA 60
consensus_1646#1      ------------------------------------------------------------
                                                                                  

consensus_1646#0      CTTATTGTTTTGAATAAAAAATCAAGCCAAAATCAAGTTTAAGCAATTGCATCAAAATGA 120
consensus_1646#1      ------------------------------------------------------------
                                                                                  

consensus_1646#0      CTAGTTTCTCCTTTACGCAGTGCGCGTTGGTGCTTGTGATCGTGGCGTGTGGTGCTACCG 180
consensus_1646#1      ------------------------------------------------------------
                                                                                  

consensus_1646#0      CCAAACCCCAGAATCAGTACGCGCACTCTAGCTACAACAAGAATACGGGAGTGCGTAATA 240
consensus_1646#1      ------------------------------------------------------CCCAGG 6
                                                                               *  

consensus_1646#0      CGTCCGTTGGCCATCGGCTGACTAATCAGCACCAGCAGTACCAGCAGCAACAGCACCAGC 300
consensus_1646#1      C-TTAGTTGGCCATCGGCTGACTAATCAGCACAGACAGTNNCAGCAGCAACAGCACCAGC 65
                      * *  ***************************   ****  *******************

consensus_1646#0      AGCACCAGCAGCACCAGCATCAGCAGCAGCAACAGCACCAATCGCAGAACCATTTTGCAC 360
consensus_1646#1      AGCACCAGCAGCACCAGCATCAGCAGCAGCAACAGCACCAATCGCAGAACCATTTTGCAC 125
                      ************************************************************

consensus_1646#0      ACCAGCATCAGCCGCAAGCCTTACGTGCACCGTTGCTGCCCCCGCATAACCCAACTCAGT 420
consensus_1646#1      ACCAGCATCAGCCGCAAGCCTTACGTGCACCGTTGCTGCCCCCGCATAACCCAACTCAGT 185
                      ************************************************************

consensus_1646#0      TTAGCCAAAGATTACAGCAACCGTTCCCGAACGCAATCCGTCCTTTCGTACCAATCACCT 480
consensus_1646#1      TTAGCCAAAGATTACAGCAACCGTTCCCGAACGCAATCCGTCCTTTCGTACCAATCACCT 245
                      ************************************************************

consensus_1646#0      CCTACAGCAATGACGTTTCGTACGATGGCAGCTATTCGTACGCGTATACGACCGGCGACG 540
consensus_1646#1      CCTACAGCAATGACGTTTCGTACGATGGCAGCTATTCGTACGCGTATACGACCGGCGACG 305
                      ************************************************************

consensus_1646#0      GACAGCAGCAGCAGGCACAGGGATATTTGAA-AAATGCCGGCCGTAAGGACCTGGAGGCA 599
consensus_1646#1      GACAGCAGCAGCAGGCACAGGGATATTTGAACAAATGCCGGCCGTAAGGACCTGGAGGCA 365
                      ******************************* ****************************

consensus_1646#0      CAGGCCGTGCAGGGCTCGTACTCGTACACCTCTCCCGAGG-TCAGCTGATT--------- 649
consensus_1646#1      CAGGCCGTGCAGGGCTCGTACTCGTACACCTCTCCCGAGGGTCAGCTGATTACGGTGACC 425
                      **************************************** **********         

consensus_1646#0      ------------------------------------------------------------
consensus_1646#1      TACATTGCAGATGAGAACGGTTTCCGTGCGGAAGGTGCTCATCTGCCACACAACACGATC 485
                                                                                  

consensus_1646#0      ------------------------------------
consensus_1646#1      CCGGAGGCAATCCAGAAATCGCTTGCCCTGATCGCC 521