These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_165#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 894 fasta sequence [CTCAAACATTTCTTATTTTATTTTCAATTCATTGCCTTAAAGACAGTTCGTAACTCTGTTTTGTTACGTATTGCTTTCTTCGCGATGTGAACCCTTTTCTCATATCTTATCGTTTCATTTACGCTCGACACCACCAGTAGCCTGGTTTGTTGTTGTGTAGGTATTCATGTTTATTTTCCCCTTCAATTCATTACCCATCCTTGCGGCTACGGAATCGAAAATAAATAAATGTCGGTGTGGGGATTATTTCGTATTCTGCTGATGGCTGTTGCGCGTTCCAAAACCGAAGCCAGGATGACGGGGAGCCGTTTGTAGCTGTGAATTCATTTAGGAAACCGGAACGAAACACTAAGCCTACTTCATTCCTAAACTAAACTAAAATTGAACCGTTCGACAGGAGGACAACTAAGGGTGGAAAAAGATGTTCTTTTTGGTTTCCATTTTGTTTGCACCGTTGGATATCTTGCACCAAGTAAACCAAGAGTAGAACGCCGTTGTACACGCAATACTGCCGAGTTTCTTGCTGCTGCTGTCGGTGGATGTCGTTTTTTTTAAGTAACCAATTATAATGTTGAATTTTAACATTTCGTATTTTAAGTTGAAGCTTCTTGCTAGTGCCTCTTTTTCGCGACATTTTTTGGTATCGAAATACATTCCTTTCTACTCAACAAATTCCTCGTCCACTCTTGCACATGCACACACACACACTCACACACATTCACGCACCGCTTTTGTTCTGGTTGTTGGTGATCTACTTTGCCTTTTTCCGTGCCATCTCACATACTGAAGCCATTTGCACTGGGAGCGGGGCGGGCAGGGCGTTGGGGTGGCAGTTCAGCCATACACTATGAGGTCTTGCTATCCCCGGGGCCTTCCAACACTTTACTTGTTGTG] [+] EMBL CNS08KYU [CTCAAACATTTCTTATTTTATTTTCAATTCATTGCCTTAAAGACAGTTCGTAACTCTGTTTTGTTACGTATTGCTTTCTTCGCGATGTGAACCCTTTTCTCATATCTTATCGTTTCATTTACGCTCGACACCACCAGTAGCCTGGTTTGTTGTTGTGTAGGTATTCATGTTTATTTTCCCCTTCAATTCATTACCCATCCTTGCGGCTACGGAATCGAAAATAAATAAATGTCGGTGTGGGGATTATTTCGTATTCTGCTGATGGCTGTTGCGCGTTCCAAAACCGAAGCCAGGATGACGGGGAGCCGTTTGTAGCTGTGAATTCATTTAGGAAACCGGAACGAAACACTAAGCCTACTTCATTCCTAAACTAAACTAAAATTGAACCGTTCGACAGGAGGACAACTAAGGGTGGAAAAAGATGTTCTTTTTGGTTTCCATTTTGTTTGCACCGTTGGATATCTTGCACCAAGTAAACCAAGAGTAGAACGCCGTTGTACACGCAATACTGCCGAGTTTCTTGCTGCTGCTGTCGGTGGATGTCGTTTTTTTTAAGTAACCAATTATAATGTTGAATTTTAACATTTCGTATTTTAAGTTGAAGCTTCTTGCTAGTGCCTCTTTTTCGCGACATTTTTTGGTATCGAAATACATTCCTTTCTACTCAACAAATTCCTCGTCCACTCTTGCACATGCACACACACACACTCACACACATTCACGCACCGCTTTTGTTCTGGTTGTTGGTGATCTACTTTGCCTTTTTCCGTGCCATCTCACATACTGAAGCCATTTGCACTGGGAGCGGGGCGGGCAGGGCGTTGGGGTGGCAGTTCAGCCATACACTATGAGGTCTTGCTATCCCCGGGGCCTTCCAACACTTTACTTGTTGTG] consensusID : consensus_165#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 126 fasta sequence [GGGTGTTGGAGTCCGGCACGCTCGGCGCACGGCCGAAGTGCTTAAATACCTCGCGGGCGGTTCGCTTGCCCTGCATCAGGACGGTTTTCCTTCCGGTCGGGGAAAACAGCCCCACGAATCGAACGT] [+] EMBL CNS090S2 [GGGTGTTGGAGTCCGGCACGCTCGGCGCACGGCCGAAGTGCTTAAATACCTCGCGGGCGGTTCGCTTGCCCTGCATCAGGACGGTTTTCCTTCCGGTCGGGGAAAACAGCCCCACGAATCGAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_165#0 CTCAAACATTTCTTATTTTATTTTCAATTCATTGCCTTAAAGACAGTTCGTAACTCTGTT 60 consensus_165#1 ------------------------------------------------------------ consensus_165#0 TTGTTACGTATTGCTTTCTTCGCGATGTGAACCCTTTTCTCATATCTTATCGTTTCATTT 120 consensus_165#1 ------------------------------------------------------------ consensus_165#0 ACGCTCGACACCACCAGTAGCCTGGTTTGTTGTTGTGTAGGTATTCATGTTTATTTTCCC 180 consensus_165#1 ------------------------------------------------------------ consensus_165#0 CTTCAATTCATTACCCATCCTTGCGGCTACGGAATCGAAAATAAATAAATGTCGGTGTGG 240 consensus_165#1 ------------------------------------------------------------ consensus_165#0 GGATTATTTCGTATTCTGCTGATGGCTGTTGCGCGTTCCAAAACCGAAGCCAGGATGACG 300 consensus_165#1 ------------------------------------------------------------ consensus_165#0 GGGAGCCGTTTGTAGCTGTGAATTCATTTAGGAAACCGGAACGAAACACTAAGCCTACTT 360 consensus_165#1 ------------------------------------------------------------ consensus_165#0 CATTCCTAAACTAAACTAAAATTGAACCGTTCGACAGGAGGACAACTAAGGGTGGAAAAA 420 consensus_165#1 ------------------------------------------------------------ consensus_165#0 GATGTTCTTTTTGGTTTCCATTTTGTTTGCACCGTTGGATATCTTGCACCAAGTAAACCA 480 consensus_165#1 ------------------------------------------------------------ consensus_165#0 AGAGTAGAACGCCGTTGTACACGCAATACTGCCGAGTTTCTTGCTGCTGCTGTCGGTGGA 540 consensus_165#1 ------------------------------------------------------------ consensus_165#0 TGTCGTTTTTTTTAAGTAACCAATTATAATGTTGAATTTTAACATTTCGTATTTTAAGTT 600 consensus_165#1 --------------------------GGGTGTTGGAGTCCGGCACGCTCGGCGCACGGCC 34 ***** * * ** * consensus_165#0 GAAGCTTCTTGCTAGTGCCTCTTTTTCGCGACATTT-TTTGGTATCGAAATACATTCCTT 659 consensus_165#1 GAAG-TGCTTA--AATACCTCGCGGGCGGTTCGCTTGCCCTGCATCAGGACGGTTTTCCT 91 **** * *** * * **** ** * ** * *** * ** * * consensus_165#0 TCTACTCAACAAATTCCTCGTCCACTCTTGCACATGCACACACACACACTCACACACATT 719 consensus_165#1 TCCGGTCGGGGAAAACAGCCCCACGAATCGAACGT------------------------- 126 ** ** ** * * * * * ** * consensus_165#0 CACGCACCGCTTTTGTTCTGGTTGTTGGTGATCTACTTTGCCTTTTTCCGTGCCATCTCA 779 consensus_165#1 ------------------------------------------------------------ consensus_165#0 CATACTGAAGCCATTTGCACTGGGAGCGGGGCGGGCAGGGCGTTGGGGTGGCAGTTCAGC 839 consensus_165#1 ------------------------------------------------------------ consensus_165#0 CATACACTATGAGGTCTTGCTATCCCCGGGGCCTTCCAACACTTTACTTGTTGTG 894 consensus_165#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||