cluster # 165

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Anopheles gambiae
cluster # 165 cluster # 165 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_165#0 length = 894 sequences # 1

consensus_165#1 length = 126 sequences # 1

consensusID : consensus_165#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 894
fasta sequence

                              [CTCAAACATTTCTTATTTTATTTTCAATTCATTGCCTTAAAGACAGTTCGTAACTCTGTTTTGTTACGTATTGCTTTCTTCGCGATGTGAACCCTTTTCTCATATCTTATCGTTTCATTTACGCTCGACACCACCAGTAGCCTGGTTTGTTGTTGTGTAGGTATTCATGTTTATTTTCCCCTTCAATTCATTACCCATCCTTGCGGCTACGGAATCGAAAATAAATAAATGTCGGTGTGGGGATTATTTCGTATTCTGCTGATGGCTGTTGCGCGTTCCAAAACCGAAGCCAGGATGACGGGGAGCCGTTTGTAGCTGTGAATTCATTTAGGAAACCGGAACGAAACACTAAGCCTACTTCATTCCTAAACTAAACTAAAATTGAACCGTTCGACAGGAGGACAACTAAGGGTGGAAAAAGATGTTCTTTTTGGTTTCCATTTTGTTTGCACCGTTGGATATCTTGCACCAAGTAAACCAAGAGTAGAACGCCGTTGTACACGCAATACTGCCGAGTTTCTTGCTGCTGCTGTCGGTGGATGTCGTTTTTTTTAAGTAACCAATTATAATGTTGAATTTTAACATTTCGTATTTTAAGTTGAAGCTTCTTGCTAGTGCCTCTTTTTCGCGACATTTTTTGGTATCGAAATACATTCCTTTCTACTCAACAAATTCCTCGTCCACTCTTGCACATGCACACACACACACTCACACACATTCACGCACCGCTTTTGTTCTGGTTGTTGGTGATCTACTTTGCCTTTTTCCGTGCCATCTCACATACTGAAGCCATTTGCACTGGGAGCGGGGCGGGCAGGGCGTTGGGGTGGCAGTTCAGCCATACACTATGAGGTCTTGCTATCCCCGGGGCCTTCCAACACTTTACTTGTTGTG]

[+] EMBL CNS08KYU             [CTCAAACATTTCTTATTTTATTTTCAATTCATTGCCTTAAAGACAGTTCGTAACTCTGTTTTGTTACGTATTGCTTTCTTCGCGATGTGAACCCTTTTCTCATATCTTATCGTTTCATTTACGCTCGACACCACCAGTAGCCTGGTTTGTTGTTGTGTAGGTATTCATGTTTATTTTCCCCTTCAATTCATTACCCATCCTTGCGGCTACGGAATCGAAAATAAATAAATGTCGGTGTGGGGATTATTTCGTATTCTGCTGATGGCTGTTGCGCGTTCCAAAACCGAAGCCAGGATGACGGGGAGCCGTTTGTAGCTGTGAATTCATTTAGGAAACCGGAACGAAACACTAAGCCTACTTCATTCCTAAACTAAACTAAAATTGAACCGTTCGACAGGAGGACAACTAAGGGTGGAAAAAGATGTTCTTTTTGGTTTCCATTTTGTTTGCACCGTTGGATATCTTGCACCAAGTAAACCAAGAGTAGAACGCCGTTGTACACGCAATACTGCCGAGTTTCTTGCTGCTGCTGTCGGTGGATGTCGTTTTTTTTAAGTAACCAATTATAATGTTGAATTTTAACATTTCGTATTTTAAGTTGAAGCTTCTTGCTAGTGCCTCTTTTTCGCGACATTTTTTGGTATCGAAATACATTCCTTTCTACTCAACAAATTCCTCGTCCACTCTTGCACATGCACACACACACACTCACACACATTCACGCACCGCTTTTGTTCTGGTTGTTGGTGATCTACTTTGCCTTTTTCCGTGCCATCTCACATACTGAAGCCATTTGCACTGGGAGCGGGGCGGGCAGGGCGTTGGGGTGGCAGTTCAGCCATACACTATGAGGTCTTGCTATCCCCGGGGCCTTCCAACACTTTACTTGTTGTG]




>consensus_165#0
CTCAAACATTTCTTATTTTATTTTCAATTCATTGCCTTAAAGACAGTTCGTAACTCTGTT
TTGTTACGTATTGCTTTCTTCGCGATGTGAACCCTTTTCTCATATCTTATCGTTTCATTT
ACGCTCGACACCACCAGTAGCCTGGTTTGTTGTTGTGTAGGTATTCATGTTTATTTTCCC
CTTCAATTCATTACCCATCCTTGCGGCTACGGAATCGAAAATAAATAAATGTCGGTGTGG
GGATTATTTCGTATTCTGCTGATGGCTGTTGCGCGTTCCAAAACCGAAGCCAGGATGACG
GGGAGCCGTTTGTAGCTGTGAATTCATTTAGGAAACCGGAACGAAACACTAAGCCTACTT
CATTCCTAAACTAAACTAAAATTGAACCGTTCGACAGGAGGACAACTAAGGGTGGAAAAA
GATGTTCTTTTTGGTTTCCATTTTGTTTGCACCGTTGGATATCTTGCACCAAGTAAACCA
AGAGTAGAACGCCGTTGTACACGCAATACTGCCGAGTTTCTTGCTGCTGCTGTCGGTGGA
TGTCGTTTTTTTTAAGTAACCAATTATAATGTTGAATTTTAACATTTCGTATTTTAAGTT
GAAGCTTCTTGCTAGTGCCTCTTTTTCGCGACATTTTTTGGTATCGAAATACATTCCTTT
CTACTCAACAAATTCCTCGTCCACTCTTGCACATGCACACACACACACTCACACACATTC
ACGCACCGCTTTTGTTCTGGTTGTTGGTGATCTACTTTGCCTTTTTCCGTGCCATCTCAC
ATACTGAAGCCATTTGCACTGGGAGCGGGGCGGGCAGGGCGTTGGGGTGGCAGTTCAGCC
ATACACTATGAGGTCTTGCTATCCCCGGGGCCTTCCAACACTTTACTTGTTGTG

consensusID : consensus_165#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 126
fasta sequence

                              [GGGTGTTGGAGTCCGGCACGCTCGGCGCACGGCCGAAGTGCTTAAATACCTCGCGGGCGGTTCGCTTGCCCTGCATCAGGACGGTTTTCCTTCCGGTCGGGGAAAACAGCCCCACGAATCGAACGT]

[+] EMBL CNS090S2             [GGGTGTTGGAGTCCGGCACGCTCGGCGCACGGCCGAAGTGCTTAAATACCTCGCGGGCGGTTCGCTTGCCCTGCATCAGGACGGTTTTCCTTCCGGTCGGGGAAAACAGCCCCACGAATCGAACGT]




>consensus_165#1
GGGTGTTGGAGTCCGGCACGCTCGGCGCACGGCCGAAGTGCTTAAATACCTCGCGGGCGG
TTCGCTTGCCCTGCATCAGGACGGTTTTCCTTCCGGTCGGGGAAAACAGCCCCACGAATC
GAACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_165#0      CTCAAACATTTCTTATTTTATTTTCAATTCATTGCCTTAAAGACAGTTCGTAACTCTGTT 60
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      TTGTTACGTATTGCTTTCTTCGCGATGTGAACCCTTTTCTCATATCTTATCGTTTCATTT 120
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      ACGCTCGACACCACCAGTAGCCTGGTTTGTTGTTGTGTAGGTATTCATGTTTATTTTCCC 180
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      CTTCAATTCATTACCCATCCTTGCGGCTACGGAATCGAAAATAAATAAATGTCGGTGTGG 240
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      GGATTATTTCGTATTCTGCTGATGGCTGTTGCGCGTTCCAAAACCGAAGCCAGGATGACG 300
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      GGGAGCCGTTTGTAGCTGTGAATTCATTTAGGAAACCGGAACGAAACACTAAGCCTACTT 360
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      CATTCCTAAACTAAACTAAAATTGAACCGTTCGACAGGAGGACAACTAAGGGTGGAAAAA 420
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      GATGTTCTTTTTGGTTTCCATTTTGTTTGCACCGTTGGATATCTTGCACCAAGTAAACCA 480
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      AGAGTAGAACGCCGTTGTACACGCAATACTGCCGAGTTTCTTGCTGCTGCTGTCGGTGGA 540
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      TGTCGTTTTTTTTAAGTAACCAATTATAATGTTGAATTTTAACATTTCGTATTTTAAGTT 600
consensus_165#1      --------------------------GGGTGTTGGAGTCCGGCACGCTCGGCGCACGGCC 34
                                                  ***** * *    **             *  

consensus_165#0      GAAGCTTCTTGCTAGTGCCTCTTTTTCGCGACATTT-TTTGGTATCGAAATACATTCCTT 659
consensus_165#1      GAAG-TGCTTA--AATACCTCGCGGGCGGTTCGCTTGCCCTGCATCAGGACGGTTTTCCT 91
                     **** * ***   * * ****     **   *  **     * ***   *    ** * *

consensus_165#0      TCTACTCAACAAATTCCTCGTCCACTCTTGCACATGCACACACACACACTCACACACATT 719
consensus_165#1      TCCGGTCGGGGAAAACAGCCCCACGAATCGAACGT------------------------- 126
                     **   **    **  *  *  *     * * ** *                         

consensus_165#0      CACGCACCGCTTTTGTTCTGGTTGTTGGTGATCTACTTTGCCTTTTTCCGTGCCATCTCA 779
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      CATACTGAAGCCATTTGCACTGGGAGCGGGGCGGGCAGGGCGTTGGGGTGGCAGTTCAGC 839
consensus_165#1      ------------------------------------------------------------
                                                                                 

consensus_165#0      CATACACTATGAGGTCTTGCTATCCCCGGGGCCTTCCAACACTTTACTTGTTGTG 894
consensus_165#1      -------------------------------------------------------