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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[CCGCGGACGCGTGGGCCACAGTTGTAACCGACTGCTGTACGCGTTGCCAAACATTTACGGTGGGAAATTTCGATTTGAAATCCCAACCGGGTAAAACAGAACTTTTCGGAATTGCTTTCAAAGGAGTTTTTGTGTGTTTTTAAAAGTTGCTTTCACCCCACAAAAGACTCGTTTGTTTGGTTTTGTTTTTTGTTTTTTAGGGAAAACGATAAAGACAGCACTATCACGAAGGGGCAGAGGTTACATTTAGTTGGTAAAGGAGAAGATCAAGAAACCCTGTAAGAGGGGGACGACGAACACACAATTAACCTTTTTACTCTCTCTCTCTCTCTCTCTCTCTTTATGAAAGCTGCACGGATCATTCCCGAATGGTCGTTTTTGTGTTTAGTTTTATTTTTGGCGTTTTTTTTTGTGTGGAGTTCACTCCAGATGTGATGATGGACCAGAGTGAAGCGACCATTTTCTGTCATCGGCTTAGTGCAGGAGTCGATGATGAGCACGTGCCCTCCCACCAATGCTGCGAAAGGGAAGAAAAAAGGTCAGTTTGGAATGCTGTGTGTGTGTGTTGTGTGTGTTTGTTTGGATTCGATCGGTGCACCAACGGAGCTATCATTCCGCACCGAAGGATCCCGGAAGCCAACACACAAACACAAAATGTACCCCCCCTCGAATGCCTT]
[+] EMBL BM634291 [CCGCGGACGCGTGGGCCACAGTTGTAACCGACTGCTGTACGCGTTGCCAAACATTTACGGTGGGAAATTTCGATTTGAAATCCCAACCGGGTAAAACAGAACTTTTCGGAATTGCTTTCAAAGGAGTTTTTGTGTGTTTTTAAAAGTTGCTTTCACCCCACAAAAGACTCGTTTGTTTGGTTTTGTTTTTTGTTTTTTAGGGAAAACGATAAAGACAGCACTATCACGAAGGGGCAGAGGTTACATTTAGTTGGTAAAGGAGAAGATCAAGAAACCCTGTAAGAGGGGGACGACGAACACACAATTAACCTTTTTACTCTCTCTCTCTCTCTCTCTCTCTTTATGAAAGCTGCACGGATCATTCCCGAATGGTCGTTTTTGTGTTTAGTTTTATTTTTGGCGTTTTTTTTTGTGTGGAGTTCACTCCAGATGTGATGATGGACCAGAGTGAAGCGACCATTTTCTGTCATCGGCTTAGTGCAGGAGTCGATGATGAGCACGTGCCCTCCCACCAATGCTGCGAAAGGGAAGAAAAAAGGTCAGTTTGGAATGCTGTGTGTGTGTGTTGTGTGTGTTTGTTTGGATTCGATCGGTGCACCAACGGAGCTATCATTCCGCACCGAAGGATCCCGGAAGCCAACACACAAACACAAAATGTACCCCCCCTCGAATGCCTT]
consensusID : consensus_1650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence
[TAGAGGAAGCTTTCTTTCTTTCGCCAGTAAGAGCGGATTCTTTTAGCTGCTGGGAGGAAAAAAAAGGGTCAAACCACAGTTGTAACCGACTGCTGTACGCGTTGCCAAACATTTACGGTGGGAAATTTCGATTTGAAATCCCAACCGGGTAAAACAGAACTTTTCGGAGTTGCTTTCAAGGGAGTTTTTGTGTGTTTTTAAAAGTTGCTTTCACCCCACAAAATACTCGTTTGTTTGGTTTTGTTTTTTGTTTTTAAGGACAACGATAAAGACAGGACTATCCACGAAGGGGCAGAGGTTACATTTAGTTGGAGAAGATCAAGAAATCATGCAATAAGAGGGGGACGACGAACACACAATTAACCTTTTTACTCTCTCTCTCTCTCTTTATGAAAGCTGCACGGATCATTCCCGAATGGTCGTTTTTGTGTTTAGTGTTTTATTTTTCGCGTTTTTTTTTTTGCGTGGAGTTCACTCCAGATGTGATGATGGACCAGAGTGAAACGACCATTTTCTGTCATCGGCTTAGTGCAGGAGTCGATGATGAGCACGTGCCCTC]
[+] EMBL BX607924 [TAGAGGAAGCTTTCTTTCTTTCGCCAGTAAGAGCGGATTCTTTTAGCTGCTGGGAGGAAAAAAAAGGGTCAAACCACAGTTGTAACCGACTGCTGTACGCGTTGCCAAACATTTACGGTGGGAAATTTCGATTTGAAATCCCAACCGGGTAAAACAGAACTTTTCGGAGTTGCTTTCAAGGGAGTTTTTGTGTGTTTTTAAAAGTTGCTTTCACCCCACAAAATACTCGTTTGTTTGGTTTTGTTTTTTGTTTTTAAGGACAACGATAAAGACAGGACTATCCACGAAGGGGCAGAGGTTACATTTAGTTGGAGAAGATCAAGAAATCATGCAATAAGAGGGGGACGACGAACACACAATTAACCTTTTTACTCTCTCTCTCTCTCTTTATGAAAGCTGCACGGATCATTCCCGAATGGTCGTTTTTGTGTTTAGTGTTTTATTTTTCGCGTTTTTTTTTTTGCGTGGAGTTCACTCCAGATGTGATGATGGACCAGAGTGAAACGACCATTTTCTGTCATCGGCTTAGTGCAGGAGTCGATGATGAGCACGTGCCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1650#0 ----------------------------------------------------------CC 2
consensus_1650#1 TAGAGGAAGCTTTCTTTCTTTCGCCAGTAAGAGCGGATTCTTTTAGCTGCTGGGAGGAAA 60
consensus_1650#0 GCGGACGCGTGGGCCACAGTTGTAACCGACTGCTGTACGCGTTGCCAAACATTTACGGTG 62
consensus_1650#1 AAAAAGGGTCAAACCACAGTTGTAACCGACTGCTGTACGCGTTGCCAAACATTTACGGTG 120
* * ***********************************************
consensus_1650#0 GGAAATTTCGATTTGAAATCCCAACCGGGTAAAACAGAACTTTTCGGAATTGCTTTCAAA 122
consensus_1650#1 GGAAATTTCGATTTGAAATCCCAACCGGGTAAAACAGAACTTTTCGGAGTTGCTTTCAAG 180
************************************************ **********
consensus_1650#0 GGAGTTTTTGTGTGTTTTTAAAAGTTGCTTTCACCCCACAAAAGACTCGTTTGTTTGGTT 182
consensus_1650#1 GGAGTTTTTGTGTGTTTTTAAAAGTTGCTTTCACCCCACAAAATACTCGTTTGTTTGGTT 240
******************************************* ****************
consensus_1650#0 TTGTTTTTTGTTTTTTAGGGAAAACGATAAAGACAGCACTATC-ACGAAGGGGCAGAGGT 241
consensus_1650#1 TTGTTTTTTGTTTTT-AAGGACAACGATAAAGACAGGACTATCCACGAAGGGGCAGAGGT 299
*************** * *** ************** ****** ****************
consensus_1650#0 TACATTTAGTTGGTAAAGGAGAAGATCAAGAAACCCTG---TAAGAGGGGGACGACGAAC 298
consensus_1650#1 TACATTTAGTTGG------AGAAGATCAAGAAATCATGCAATAAGAGGGGGACGACGAAC 353
************* ************** * ** *******************
consensus_1650#0 ACACAATTAACCTTTTTACTCTCTCTCTCTCTCTCTCTCTCTTTATGAAAGCTGCACGGA 358
consensus_1650#1 ACACAATTAACCTTTTTACTCTCTCTCTCTCT--------CTTTATGAAAGCTGCACGGA 405
******************************** ********************
consensus_1650#0 TCATTCCCGAATGGTCGTTTTTGTGTTTAGT--TTTATTTTTGGCGTTTTTTTTT--GTG 414
consensus_1650#1 TCATTCCCGAATGGTCGTTTTTGTGTTTAGTGTTTTATTTTTCGCGTTTTTTTTTTTGCG 465
******************************* ********* ************ * *
consensus_1650#0 TGGAGTTCACTCCAGATGTGATGATGGACCAGAGTGAAGCGACCATTTTCTGTCATCGGC 474
consensus_1650#1 TGGAGTTCACTCCAGATGTGATGATGGACCAGAGTGAAACGACCATTTTCTGTCATCGGC 525
************************************** *********************
consensus_1650#0 TTAGTGCAGGAGTCGATGATGAGCACGTGCCCTCCCACCAATGCTGCGAAAGGGAAGAAA 534
consensus_1650#1 TTAGTGCAGGAGTCGATGATGAGCACGTGCCCTC-------------------------- 559
**********************************
consensus_1650#0 AAAGGTCAGTTTGGAATGCTGTGTGTGTGTGTTGTGTGTGTTTGTTTGGATTCGATCGGT 594
consensus_1650#1 ------------------------------------------------------------
consensus_1650#0 GCACCAACGGAGCTATCATTCCGCACCGAAGGATCCCGGAAGCCAACACACAAACACAAA 654
consensus_1650#1 ------------------------------------------------------------
consensus_1650#0 ATGTACCCCCCCTCGAATGCCTT 677
consensus_1650#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||