cluster # 1661

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Anopheles gambiae
cluster # 1661 cluster # 1661 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1661#0 length = 514 sequences # 1

consensus_1661#1 length = 499 sequences # 1

consensusID : consensus_1661#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [GTATTTTTCGCATTCGCAACGTTATGATTATAACCATTATCACCATGCGATTCGGCAGTGGGCTTCCCGAATGGAGCGCGATTCGGACCCGGGATACAGGGCAGAAACGTTAATGAAAGATGGAGTCTTCTTGGGGGAGGGGGAGGTATCCGGGGAACAGCTTCTGGTTTTCCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGGNTTCAAGGACTCAAGGTTGAAATACAAATTCCTCTTTTAGCAGAATCATATANATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACC]

[+] EMBL BX623932             [GTATTTTTCGCATTCGCAACGTTATGATTATAACCATTATCACCATGCGATTCGGCAGTGGGCTTCCCGAATGGAGCGCGATTCGGACCCGGGATACAGGGCAGAAACGTTAATGAAAGATGGAGTCTTCTTGGGGGAGGGGGAGGTATCCGGGGAACAGCTTCTGGTTTTCCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGGNTTCAAGGACTCAAGGTTGAAATACAAATTCCTCTTTTAGCAGAATCATATANATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACC]




>consensus_1661#0
GTATTTTTCGCATTCGCAACGTTATGATTATAACCATTATCACCATGCGATTCGGCAGTG
GGCTTCCCGAATGGAGCGCGATTCGGACCCGGGATACAGGGCAGAAACGTTAATGAAAGA
TGGAGTCTTCTTGGGGGAGGGGGAGGTATCCGGGGAACAGCTTCTGGTTTTCCGCACTGA
TGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAG
AGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGG
ACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGG
NTTCAAGGACTCAAGGTTGAAATACAAATTCCTCTTTTAGCAGAATCATATANATCACAG
CACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACA
AAGCAAATTGGCTCTAGTTTTATAGTACTTTACC

consensusID : consensus_1661#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [ATCGCCACGAGGCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGGTTTCAAGGACTCAAGGTTGAAATACAAATTCTTCTTTTAGCAGAATCATATAAATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACCTAAAAGTGTTGATACTTTAATTCCTTACTTAACTTCAAGACCCTACGCGATAGTGTCAGTAGCAGTAGAAAGCTCAATTTGAGTGCATTAAGCATAGTAGAAAAAGCAAACGTAATGGAGAGCACTTAAAAAAGTGTACATAAAA]

[+] EMBL AL933800             [ATCGCCACGAGGCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGGTTTCAAGGACTCAAGGTTGAAATACAAATTCTTCTTTTAGCAGAATCATATAAATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACCTAAAAGTGTTGATACTTTAATTCCTTACTTAACTTCAAGACCCTACGCGATAGTGTCAGTAGCAGTAGAAAGCTCAATTTGAGTGCATTAAGCATAGTAGAAAAAGCAAACGTAATGGAGAGCACTTAAAAAAGTGTACATAAAA]




>consensus_1661#1
ATCGCCACGAGGCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCAC
ACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCT
AAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAAT
GGAGCCCGAAAATCCGACGGTTTCAAGGACTCAAGGTTGAAATACAAATTCTTCTTTTAG
CAGAATCATATAAATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTG
AAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACCTAAAAG
TGTTGATACTTTAATTCCTTACTTAACTTCAAGACCCTACGCGATAGTGTCAGTAGCAGT
AGAAAGCTCAATTTGAGTGCATTAAGCATAGTAGAAAAAGCAAACGTAATGGAGAGCACT
TAAAAAAGTGTACATAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1661#0      GTATTTTTCGCATTCGCAACGTTATGATTATAACCATTATCACCATGCGATTCGGCAGTG 60
consensus_1661#1      ------------------------------------------------------------
                                                                                  

consensus_1661#0      GGCTTCCCGAATGGAGCGCGATTCGGACCCGGGATACAGGGCAGAAACGTTAATGAAAGA 120
consensus_1661#1      ------------------------------------------------------------
                                                                                  

consensus_1661#0      TGGAGTCTTCTTGGGGGAGGGGGAGGTATCCGGGGAACAGCTTCTGGTTTTCCGCACTGA 180
consensus_1661#1      ------------------------------------ATCGCCACGAGG----CGCACTGA 20
                                                          *  **  *  *     ********

consensus_1661#0      TGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAG 240
consensus_1661#1      TGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAG 80
                      ************************************************************

consensus_1661#0      AGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGG 300
consensus_1661#1      AGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGG 140
                      ************************************************************

consensus_1661#0      ACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGG 360
consensus_1661#1      ACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGG 200
                      ************************************************************

consensus_1661#0      NTTCAAGGACTCAAGGTTGAAATACAAATTCCTCTTTTAGCAGAATCATATANATCACAG 420
consensus_1661#1      TTTCAAGGACTCAAGGTTGAAATACAAATTCTTCTTTTAGCAGAATCATATAAATCACAG 260
                       ****************************** ******************** *******

consensus_1661#0      CACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACA 480
consensus_1661#1      CACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACA 320
                      ************************************************************

consensus_1661#0      AAGCAAATTGGCTCTAGTTTTATAGTACTTTACC-------------------------- 514
consensus_1661#1      AAGCAAATTGGCTCTAGTTTTATAGTACTTTACCTAAAAGTGTTGATACTTTAATTCCTT 380
                      **********************************                          

consensus_1661#0      ------------------------------------------------------------
consensus_1661#1      ACTTAACTTCAAGACCCTACGCGATAGTGTCAGTAGCAGTAGAAAGCTCAATTTGAGTGC 440
                                                                                  

consensus_1661#0      -----------------------------------------------------------
consensus_1661#1      ATTAAGCATAGTAGAAAAAGCAAACGTAATGGAGAGCACTTAAAAAAGTGTACATAAAA 499