cluster # 1665

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Anopheles gambiae
cluster # 1665 cluster # 1665 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1665#0 length = 262 sequences # 1

consensus_1665#1 length = 170 sequences # 1

consensusID : consensus_1665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 262
fasta sequence

                              [CTGTCCCCGGCACCACGTGTCACGCACATCCGGAAGCCGTCGGTGCAGCGGGATCAGATCTGACACGTACTGATTGAGACCCTGCTCGTTCCAACCCTTCAGCACCAGCTCCCGAACGTTCGGCGGTAACACATCCGGCAGTTTCACCGGCAGTGCCATATCACCGGGCGATCCATCCGGGTCCGGTGAACCAACGGCTAGTCGGGCAGCATTCAGTATGAGATGGAGCGCCTCCTCCAGCGTTGCCGTATCGTTGGACGGG]

[+] EMBL CNS09539             [CTGTCCCCGGCACCACGTGTCACGCACATCCGGAAGCCGTCGGTGCAGCGGGATCAGATCTGACACGTACTGATTGAGACCCTGCTCGTTCCAACCCTTCAGCACCAGCTCCCGAACGTTCGGCGGTAACACATCCGGCAGTTTCACCGGCAGTGCCATATCACCGGGCGATCCATCCGGGTCCGGTGAACCAACGGCTAGTCGGGCAGCATTCAGTATGAGATGGAGCGCCTCCTCCAGCGTTGCCGTATCGTTGGACGGG]




>consensus_1665#0
CTGTCCCCGGCACCACGTGTCACGCACATCCGGAAGCCGTCGGTGCAGCGGGATCAGATC
TGACACGTACTGATTGAGACCCTGCTCGTTCCAACCCTTCAGCACCAGCTCCCGAACGTT
CGGCGGTAACACATCCGGCAGTTTCACCGGCAGTGCCATATCACCGGGCGATCCATCCGG
GTCCGGTGAACCAACGGCTAGTCGGGCAGCATTCAGTATGAGATGGAGCGCCTCCTCCAG
CGTTGCCGTATCGTTGGACGGG

consensusID : consensus_1665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 170
fasta sequence

                              [GTCAGAGCAGAACCCGCCGCACCGACGGCCTCCGGATGTGCGTGACACGTGGTGCCGGGGACAGGAGCAGGAGCGACGGCGGCGTAATGTTGGTCCCGGGACATTGCCCCGCGCGGCCATAGTGATCGTGTTCGACAATGAGGCCAGGTCGGTGTTGCAGCGTACCGTAC]

[+] EMBL CNS09538             [GTCAGAGCAGAACCCGCCGCACCGACGGCCTCCGGATGTGCGTGACACGTGGTGCCGGGGACAGGAGCAGGAGCGACGGCGGCGTAATGTTGGTCCCGGGACATTGCCCCGCGCGGCCATAGTGATCGTGTTCGACAATGAGGCCAGGTCGGTGTTGCAGCGTACCGTAC]




>consensus_1665#1
GTCAGAGCAGAACCCGCCGCACCGACGGCCTCCGGATGTGCGTGACACGTGGTGCCGGGG
ACAGGAGCAGGAGCGACGGCGGCGTAATGTTGGTCCCGGGACATTGCCCCGCGCGGCCAT
AGTGATCGTGTTCGACAATGAGGCCAGGTCGGTGTTGCAGCGTACCGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1665#0      CTGTCCCCGGCACCACGTGTCACGCACATCCGGAAGCCGTCGGTGCAGCGGGATCAGATC 60
consensus_1665#1      ------------------------------------------------------------
                                                                                  

consensus_1665#0      TGACACGTACTGATTGAGACCCTGCTCGTTCCAACCCTTCAGCACCAGCTCCCGAACGTT 120
consensus_1665#1      -----------------------GTCAGAGCAGAACCCGCCGCACCGACGGCCTCCGGAT 37
                                             *   *  *  * **  * *****  *  **    * *

consensus_1665#0      CGGCGGTAACACATC-CGGCAGTTTCACCGGCAGT-GCCATATCACCGGGCGATCCATCC 178
consensus_1665#1      GTGCG-TGACACGTGGTGCCGGGGACAGGAGCAGGAGCGACGGCGGCGTAATGTTGGTCC 96
                        *** * **** *   * * *   **   ****  ** *   *  **     *   ***

consensus_1665#0      GGGTCCGGTGAACCA-ACGGCTAGTCGGGCAGCATTCAGTA-TGAGATGGAGCGCCTCCT 236
consensus_1665#1      CGGGACATTGCCCCGCGCGGCCATAGTGATCGTGTTCGACAATGAGGCCAGGTCGGTGTT 156
                       **  *  **  **   **** *    *   *  ***   * ****     *    *  *

consensus_1665#0      CCAGCGTTGCCGTATCGTTGGACGGG 262
consensus_1665#1      GCAGCGT-ACCGTAC----------- 170
                       ******  *****